slc38a9 (slc38a9,LOC107670042,LOC107564110,LOC107740785,LOC107566906,LOC107715861)


Basic Information

Item Value
gene id slc38a9
gene name slc38a9,LOC107670042,LOC107564110,LOC107740785,LOC107566906,LOC107715861
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22908793 ~ 22928244 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255282.3
GTCTGGGCGTAGCGTTCACTACAGGTCCAGCAAGAACTGTAACCGGTGTGTGTGATCACGCTGTGGTTCCTTTTCAAAACAAGTTAGCCTGGCGAGACGAGgtgtttcttctgtttctcctaGGAGGTAATGAATGATTTTTAGGTGACGTACTGAAAGAACATGGATGAGGACTGGAAACCTCTGTTTGCCTCTATTCAAGCAGGAGAGTACTACTCAGACCCAGTAGACTCACTGGACCCCAGACAAAGAAGGCCTTTTCATGTGGAGCCCAAGAACATAGTGGAGGATTCTGCCCAGGAACGAGTGTCATCTGAGGCTTCAGCATTGAACAGCAGGGTGCATTACTATGGCCGATTGACCGCCTCTTCTGACAGACTGCTGGTTCCACCGGATCATGTGATCCCCTCACCTGAAGATATCTACATTTATAGCCCTCTTGGGACAGCATTCAAAGTTCACGGGAAAGATGGCGCTGTCAAAAACCCTAGCATTGTCACCATTTTTGCTATATGGAATACAATGATGGGGACGTCTATATTGAGCATACCATGGGGAATAAAGCAGGCAGGTTTTACCTTGGGGATCATTATTGTCATCTTAATGGGCTTACTGACCCTCTACTGCTGTTACAGAGTTCTCAAATCTACTAAATCAATACCTTACATAGATACTTCAGACTGGGAGTTTCCTGATGTATGTAAATATTACTTCGGAGCATTTGGACAGTGGTCCAGTCTGCTCTTCTCCCTGGTGTCACTGATCGGAGCAATGGTGGTCTACTGGGTTCTAATGTCCAACTTCCTGTTCAACACAGGAAAATTCATTTATAACTACGTTCACAACGTCAATATGTCTGACTCAGAGTTTGGAACAAATGGAACTGACAGAGTGGTGTGTCCAtacccagacctgaatccacaCAGAAACAGCAGCCTGGACCAGTATTCCTCCAGCAGTGACAACAGTACAGCTGTGTTTGACCACTGGTGGAGTAAAACCAACACCATCCCCTTCTACCTCATCAttctgctgctgccgctgctcaACTTCCGCTCAGCCTCCTTCTTCGCCAGGTTCACCTTCCTGGGCACCATTTCAGTAATCTACCTTATCACGTTGGTTACCATCAAAGCTGTTCGATTAGGATTCCATCTGGAGTTCCACTGGTTTCATTCCACTGAGTTTTTTGTACCAGAATTCAGATTACTGTTTCCTCAGCTGACTGGTGTTCTCACACTAGCCTTCTTCATCCACAACTGTGTCATCACCCtcatgaaaaacaacaaaaatcagGAGAACAATGTACGAGATTTGTCCTTGGCCTATCTGCTAGTAGGCCTGACTTACCTGTATGTGGGGGTCTTGATCTTTGCTGCCTTCCCATCTCCACCCCTGTCTAAGGAGTGCCTTGAACCAAATTTCCTGGATAACTTCCCCAGCAgtgatatttgggtgtttgtggCTCGGACCTTCCTGCTGTTCCAGATGACCACCGTTTACCCGCTGCTGGGTTACCTGGTCCGAGTGCAGCTGATGAGCCAGCTTTTTGGGGATCACTACCCCAGttTTCTGCATGTCTTCATGTTGAATGTCGTCATTGTAGCTTCTGGAGTACTTATGGCCAAATTTTACCCCAATATTGGTTCCATTATCCGGTACTCGGGGGCCACATGTGGGCTGGCTCTGGTCTTCGTCTTCCCCTCACTCATTCACATGGTGGCTCTGAAGCGCCGTGGCGAGTTGCGCTGGCCTTCTGCTTGCTTCCACAGCTTTCTAATTTTATTAGGCGTAGCGAATGTTCTGGGACAGTTTTTCAtgtagcatttttttgtttttgttatttttgtttgtttgttttttcatcatCTTCTTATGCAAGTTTTCTTCTGTAGCACACTCATTACTCACATGCACTCACTGTTCCTCTCTCACTAACACACTTATTCATTCAATGTTGGGAGAATGGTTCTTCTTAGTTCTAATACTGTACGGGGAATGATGCACGATATGGTCAGGAGTACTGGGACACCTGCCCTTTCAttgttatatataaaatgaagagTGGAATGGAGAGTATAAGtattgcttttgttggagtaactgtctagAGAAGGTGGCTGTGTACTAGATTTTGGAATATTCCTGTGAGGAATTGATTGCATTATGGATGAACTACACACCACCCCATgcccaacttcccaactcatctaCAAAATACTAGATGAAGCACCCATCATCATTCTAGAGAAATCAGATAAACTGCTCCTAGCTCAGTGCTGGTGGGAGGGTATTCAACCTTTAGCCCATgcatggcattaggcatggtgccaaagAGTCCCAATcaattggcaatacttctctataGGAACTAGAAAAGCTTTGTGTTTGGGCATTTGCACAAGTGTGGCTGCAATGGGTATAACATAAAATAGCTGTGCATAAAATGTGCTCATTAAGAGGAGTGTCCGCAAACCTTTAGACATTAGTATAGTTCTGATAATATACTGCAGGTAAAAGTAGTAAATGGTGTATTAAATTAAGTTCTAGGTTTGTACCATAGGTGGCACTATAacataaaaaagct

Function

symbol description
slc38a9 Enables arginine transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport; cellular response to amino acid stimulus; and positive regulation of TOR signaling. Predicted to act upstream of or within amino acid transport. Is integral component of membrane. Orthologous to human SLC38A9 (solute carrier family 38 member 9).

NR:

description
PREDICTED: sodium-coupled neutral amino acid transporter 9

GO:

id name namespace
GO:0006814 sodium ion transport biological_process
GO:0006865 amino acid transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K14995 SLC38A9; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255282.3 True 2587 mRNA 0.45 15 22908793 22928244

Neighbor

gene id symbol gene type direction distance location
il6st NA coding upstream 28479 22865141 ~ 22880314 (+)
ankrd55 ankrd55,LOC107670032,LOC107737049,LOC107702571 coding upstream 45410 22839508 ~ 22863383 (+)
LOC111195066 NA coding upstream 380710 22519419 ~ 22528083 (+)
LOC103022635 mat2al,LOC108440739,LOC108276530,LOC107732036,LOC107653488,LOC107573852,LOC102202437 coding upstream 393208 22509888 ~ 22515585 (+)
tmem150c tmem150c,LOC107558260 coding upstream 432488 22468437 ~ 22476305 (+)
LOC111194992 NA coding downstream 36749 22964993 ~ 22966528 (+)
LOC111194985 NA coding downstream 42178 22970422 ~ 22973005 (+)
LOC103038592 LOC106571427,LOC108427269,LOC108276947 coding downstream 66845 22995089 ~ 23187224 (+)
fut10 fut10 coding downstream 275232 23203476 ~ 23217258 (+)
purg NA coding downstream 531124 23459368 ~ 23461975 (+)
G178394 map3k1 non-coding upstream 187987 22713737 ~ 22720806 (+)
G178392 map3k1,LOC107670047 non-coding upstream 200392 22707748 ~ 22708401 (+)
G178381 tln1 non-coding upstream 236963 22629911 ~ 22671830 (+)
G178368 tln1 non-coding upstream 303221 22604995 ~ 22605572 (+)
G178344 NA non-coding upstream 384720 22516531 ~ 22524073 (+)
G178472 NA non-coding downstream 1979 22930223 ~ 22930945 (+)
G178474 NA non-coding downstream 7239 22935483 ~ 22941621 (+)
G178476 NA non-coding downstream 12360 22940604 ~ 22941149 (+)
G178477 NA non-coding downstream 14882 22943126 ~ 22943349 (+)
G178482 sh2d4a non-coding downstream 22719 22950963 ~ 22957159 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other upstream 199236 22689001 ~ 22709557 (+)
G178352 NA other upstream 362663 22544640 ~ 22546130 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other upstream 406634 22493440 ~ 22502159 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other upstream 417290 22486823 ~ 22491503 (+)
LOC103025565 scd5 other upstream 443064 22456319 ~ 22465729 (+)
G178485 NA other downstream 35203 22963447 ~ 22964989 (+)
LOC103032894 LOC108424565 other downstream 1519548 24447792 ~ 24454622 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other downstream 2315917 25244161 ~ 25257469 (+)
LOC103024073 LOC108424537 other downstream 3902393 26830637 ~ 26879083 (+)
rnasek rnasek,LOC107554319 other downstream 3985506 26913750 ~ 26916344 (+)

Expression


Co-expression Network