ankrd55 (ankrd55,LOC107670032,LOC107737049,LOC107702571)


Basic Information

Item Value
gene id ankrd55
gene name ankrd55,LOC107670032,LOC107737049,LOC107702571
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22839508 ~ 22863383 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255340.3
CTCTCCATCCCCAttcacagacacacgcacaaacacacacacgcacacgcacatcTCAGAGCCAAAGCATCAGCAGCACATCTTCCTCAGCATCTCAGCAGCATCCAGTGGGCACAGATTGGATGCGTGGATTTTTTCAGTGGAGACCCCTGGAGACTGGTTTACTCctccttattctctctctctctctctctctctctctctctctctctctctctctctctctgtttgtgtgtgtgtgtgttcagtctgCGTCTATGGGTTCCACCAGAGCCAGAAGAGGAGCTGCTCCCACACACACCATGTCCTAGTCCACAGTGCCTCAGGTTTGCAGGGGTTGCTCACTGTCCCCCTGCTGCTCTGCCTGGTCATGGAGTTCACCTCTTCATCTGTGTTTGACCAGCACAAAGACTGTGCCGAGGAGGTCGACTTGAACGTGGTGTTCCAAGCAGCAGCCACAGGAGACGTCAACACCCTGACAGCCACGATACGTGAGGACCCGTCCATCCTGGAGTACTGTGACAGTGAAGGCTCTACGCCCCTGATGCACGCTGTCTCTGGGAGGCAGGTGGACACAGTGAAACTGCTGCTGAAGATGGGAGCATCCATCAACACTCAGGACGCCTGCGGCCGCACCTCCCTCTCCCTCGCCACATACCTGGGGTGGCTGGAAGGCTGTGTTTGTTTACTACGAAATGGAGCCAAGCAGAACATCCCTGATAAGAATGGACGTTTGCCTCTTCATGCTGCTACTGCGGAGGTTGACCTCAGGCTCATGGCTGTGTTGCTGCAACAATCAGCACTGTGTGAAATAAATCATCAAGACAATGAGGGAATGACCGCCCTTCACTGGGCATCCTTCCATAACCGTCCAGAGCATGTGCAGGCCCTGCTGCAGAAAGGAGCGGACCCCACGCTGGTGGATAAAGactttaaaactgcacttcACTGGGCTGTGCAGaGTGGTAGCAGATTTATGTGCTCACTGATTCTCGATCATCACCTCGGCTCCTCTGTCATCAACTACGACGATGAAAACGGCAAAACCTGTGTTCACATCGCAGCAGCTGCAGGTTACAGCGACATCATCTACGAGCTGGCCCGCGTCCCCGAGACCAACCTGCAGGCCCTGGATGTGGACGAGCGGACTCCTCTGCACTGGGCAGCCGCTGCAGGGAAGGAGGACTGTGTGCAGGCTTTGCTGCAGTTGGGTGTGGAGGCCGGCCCCAGAGACATCAACGAGAACACTCCACTGACTTACGCCATGTACTGCGGCCACACTGCCTGCATCAAACTCCTCTCAGCTGAAAACAGgTCTGAGTCATTCCGACAGCTTCACTCTCAAAACACAGATCCTTCTATCCGAAAAGAGGGTAAATTCCGCGTTCTGAACAACATCTTTTCCtgtaagaagaagaaagagctGCATGCGGCGCGGCAGAGGGAGCTGAGTCGAGAGCGGCAGCTTGAGGAGGAGACCTCTGAAGTGGACGATATTATCACCATGTTCGACTGCATCAACGACCTCCCCGGTAAAGAGGAGAACAGAAAGTGCCCAAACGAGCCTGAAAAGCTCCACCTGATCGAAGACCCCACAGCCAAGGACTACAAGAGCCTGCCGCCCATCCGCACACAGAGTCTTCCACCCATCACTCTGGGAAACTCTCTGCTAGCCAACTCGCACACTGCAGCACACAGAACTGTCTCAGGCCAAATGGTCAGTCACTTGGCCCACAGATCGCAGAAGAGCAAGAGTGAGCATGATCTTTTCGACAGCAGAATGAAGGGTCAGAAAGCTTCTGCTCCTGCGTGGAAAACTGAATCCAGTCAGTTGTTAACCCACAAGGCTTGGATCTCACCTCCATCCGACAGGCTGCTGGATAAACTGCTGCACGAAACAGCTAGTCCCATAGATGTGCTTTGCTCCAACCACACACCTTACATTCAGAGGAACGACCAAGCTGCAAATACACATCTAGTACCACTGAGGGCAAGAGAATCTGCACTGATGCGCAACAGTTTGGCTCCTATTCGTGATCACTGCACTCACAGATTCTCCCTGCCACCTGATCAAGTCTCTCAAGGAGTGAAGAAGTCCAAATCTCTACCCCTCAGCTCTCTGGCACGGAATCTTGCAGGTCTCCCGCTCCCCCTAACCTCCAAAGCCCAGAGACCAAGCGTCCCTCAAAGCCAGTCTCTGTTATCCTTCCCGGCCCCGCTGACCACTGAGCCTCTGAGAAACATTCAAGTTCTTCCCGCAATCCCTCCTCAAAGAAAACGAAGCCCCTCCCCTCCAAAGCTCCCGAAAGCAGCTCTGAGCAGTTCTGATAACTCAACTTGATTGATCTTCTGTTTACTAGTGACAACAGAGTGAAACAGGTGACCTCTACTCAAACGAAGTGAGACTGATTCCTGTCTGTAAACTTGAATTGATAAAGATCTTCAGGTTTAGGTCAAAAACTGTTGGACTGTAAGTGCCCAGTGCTCGTTGCCAGTACATTTCATGGCAAGGAAGGGAAGATTGAAACGTATAGTTACAACATTTGAAAAGTTTACGAACTTGTCTGCCtattttttcatacatttttacagaagaaatgatttttttgtctATGGCATGCACTGTGTATTCTCTGGTTTTCTGGTTTGCCTTGTAATTTTAACACTTAAACATACAGTTTGAGTGTCTAATGTCAATGTTTTAAGATAACATTATTGATAATAAATGGTGCATCATTTTTTCATC

Function

symbol description
ankrd55 Acts upstream of or within glucose homeostasis and type B pancreatic cell development. Orthologous to human ANKRD55 (ankyrin repeat domain 55).

NR:

description
PREDICTED: ankyrin repeat domain-containing protein 55

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255340.3 True 2746 mRNA 0.51 11 22839508 22863383

Neighbor

gene id symbol gene type direction distance location
LOC111195066 NA coding upstream 311425 22519419 ~ 22528083 (+)
LOC103022635 mat2al,LOC108440739,LOC108276530,LOC107732036,LOC107653488,LOC107573852,LOC102202437 coding upstream 323923 22509888 ~ 22515585 (+)
tmem150c tmem150c,LOC107558260 coding upstream 363203 22468437 ~ 22476305 (+)
sec31a sec31a coding upstream 385897 22421362 ~ 22453611 (+)
LOC103047607 LOC103047607 coding upstream 504965 22322720 ~ 22334543 (+)
il6st NA coding downstream 1758 22865141 ~ 22880314 (+)
slc38a9 slc38a9,LOC107670042,LOC107564110,LOC107740785,LOC107566906,LOC107715861 coding downstream 45410 22908793 ~ 22928244 (+)
LOC111194992 NA coding downstream 101610 22964993 ~ 22966528 (+)
LOC111194985 NA coding downstream 107039 22970422 ~ 22973005 (+)
LOC103038592 LOC106571427,LOC108427269,LOC108276947 coding downstream 131706 22995089 ~ 23187224 (+)
G178394 map3k1 non-coding upstream 118702 22713737 ~ 22720806 (+)
G178392 map3k1,LOC107670047 non-coding upstream 131107 22707748 ~ 22708401 (+)
G178381 tln1 non-coding upstream 167678 22629911 ~ 22671830 (+)
G178368 tln1 non-coding upstream 233936 22604995 ~ 22605572 (+)
G178344 NA non-coding upstream 315435 22516531 ~ 22524073 (+)
G178472 NA non-coding downstream 66840 22930223 ~ 22930945 (+)
G178474 NA non-coding downstream 72100 22935483 ~ 22941621 (+)
G178476 NA non-coding downstream 77221 22940604 ~ 22941149 (+)
G178477 NA non-coding downstream 79743 22943126 ~ 22943349 (+)
G178482 sh2d4a non-coding downstream 87580 22950963 ~ 22957159 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other upstream 129951 22689001 ~ 22709557 (+)
G178352 NA other upstream 293378 22544640 ~ 22546130 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other upstream 337349 22493440 ~ 22502159 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other upstream 348005 22486823 ~ 22491503 (+)
LOC103025565 scd5 other upstream 373779 22456319 ~ 22465729 (+)
G178485 NA other downstream 100064 22963447 ~ 22964989 (+)
LOC103032894 LOC108424565 other downstream 1584409 24447792 ~ 24454622 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other downstream 2380778 25244161 ~ 25257469 (+)
LOC103024073 LOC108424537 other downstream 3967254 26830637 ~ 26879083 (+)
rnasek rnasek,LOC107554319 other downstream 4050367 26913750 ~ 26916344 (+)

Expression


Co-expression Network