LOC103041089 (lim2.1,LOC103041089,LOC108423752,LOC107579014)


Basic Information

Item Value
gene id LOC103041089
gene name lim2.1,LOC103041089,LOC108423752,LOC107579014
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 27600092 ~ 27606283 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258115.3
TCAGCTGATTGGCTGTGTCTCTGCCTCTGCTTTTGTCTCTGCGCCTCGTTTGTTCTTCCTATTCAGCTGCTAAACGCTGGTGCTAAGAGTTGCTGGATCGCTGCCGGCACTGCCATTACGGGGCCTTGGTGTATTTTGTCAAACAAACCCCTCAGTTTTTCAACACGGAGTTAGAAAGTCCCATAGATTAAGtctgTGTGCAGTCGCAGGATGTACAGTTTTATGGGAGGAGGGCTGTTCTGTGCCGGAGTGGGGAATATACTCCTGATCGTTTCCACAGCAACAGATTATTGGATGCAGTACCGTCACTCAAACAACTTCATGCACCAGGGCCTGTGGAGATACTGCACGCCTGGCAAATGCTTCACACACACGGACAGCATCGcCTACTGGGATGCCACGCGTGCCTTCATGATCCTGTCACTGCTCGCGTGCTTCTTCGGCATCATTATCGGTATCATGGCCTTCATCCATTACTCCACCTTTGAACGGTTTGATAAAACCTTCGCAGCTGGAACACTCTTCTTCATCTCGTgcTTTTTCGTGTTCTTGGCCATGGCTGTGTACACGGGGGTAACTATGAATTATTACGGTAAGCGCTACGGCAGCTGGCGCTTCTCCTGGTCCTACATCATCGGGTGGGTGGCGGTGGTGCTCACCTTCTTTTCAGGTATTTTCTATATGTGTGCCTACCGGATGCATGAATGCCCCAGAAACCCAGCTCCTCACTAGGAGGCGAGATGATGAGATGATGAAGATTAATAATACCATCCAGGGTCTAGGgtttgaatgaaaaaaatactgtgattgaaataaataatcgtggattcaa

Function

symbol description
lim2.1 Predicted to be a structural constituent of eye lens. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in lens and solid lens vesicle. Human ortholog(s) of this gene implicated in cataract and cataract 19 multiple types. Orthologous to human LIM2 (lens intrinsic membrane protein 2).

NR:

description
lens fiber membrane intrinsic protein

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258115.3 True 832 mRNA 0.49 5 27600092 27606283

Neighbor

gene id symbol gene type direction distance location
bsx bsx,LOC107747047 coding downstream 5568 27591571 ~ 27594524 (-)
zpr1 zpr1,LOC107693980,LOC107747003,LOC107751399,LOC107577081 coding downstream 60382 27528660 ~ 27539710 (-)
LOC103027279 NA coding downstream 81530 27511131 ~ 27518562 (-)
vps11 vps11,LOC107691631,LOC107744603 coding downstream 106726 27480659 ~ 27493366 (-)
LOC103044875 NA coding downstream 133418 27447351 ~ 27466674 (-)
LOC103039144 LOC108423784,LOC108277316 coding upstream 804729 28411012 ~ 28570105 (-)
panx3 panx3,LOC107747045,LOC107686209,LOC107589683,LOC107579026,LOC107691702 coding upstream 1333308 28939591 ~ 28949916 (-)
pknox2 pknox2,LOC107691639,LOC106567647,LOC106603668 coding upstream 1347756 28954039 ~ 28998439 (-)
robo3 robo3,LOC107751391,LOC107577175 coding upstream 1552757 29159040 ~ 29364276 (-)
picalm picalm,LOC107744613 coding upstream 1966371 29572654 ~ 29628399 (-)
G179572 hyou1,LOC107588517 non-coding downstream 92115 27505695 ~ 27507977 (-)
G179528 NA non-coding downstream 584126 27015745 ~ 27015966 (-)
G179524 NA non-coding downstream 589274 27010524 ~ 27010818 (-)
G179490 NA non-coding downstream 711007 26884446 ~ 26889085 (-)
G179487 LOC108424537 non-coding downstream 720669 26877576 ~ 26879423 (-)
G179596 NA non-coding upstream 56704 27662987 ~ 27663294 (-)
G179597 NA non-coding upstream 60476 27666759 ~ 27667611 (-)
G179642 NA non-coding upstream 81843 27688126 ~ 27691388 (-)
G179651 NA non-coding upstream 306547 27912830 ~ 27964374 (-)
G179669 NA non-coding upstream 781689 28387972 ~ 28389380 (-)
G179578 LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586 other downstream 33400 27561845 ~ 27566692 (-)
G179583 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 74704 27524328 ~ 27525388 (-)
LOC103038646 zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012 other downstream 75957 27523131 ~ 27524135 (-)
ift46 ift46 other downstream 122114 27470086 ~ 27477978 (-)
G179569 NA other downstream 156776 27440231 ~ 27443316 (-)
G179816 NA other upstream 1244407 28850690 ~ 28851105 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other upstream 3340663 30946946 ~ 30957767 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other upstream 4287919 31894202 ~ 32071924 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other upstream 4633896 32240179 ~ 32262598 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other upstream 4830042 32436325 ~ 32584343 (-)

Expression


Co-expression Network