bsx (bsx,LOC107747047)


Basic Information

Item Value
gene id bsx
gene name bsx,LOC107747047
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 27591571 ~ 27594524 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258116.3
AAAGCTGGTCTGTACGGCGCTCTGCTGCTACCCCTCAGCTTGGATAAATAGTAATGTACCTGAGGGCGGACAGCGTTCCGCACACACCTGTCCACCGTTCTGCTTTTTTCGGGGGGACGCTGCGCGCACTGACCGAGGTGGAGTGGCCGGGTGCGGGCGCTGCGAGCTGCGGGGAGAGTCGTGCGGGCCTTTTGGCAGGGATGAGCGGGAACTACACGGCGGCCGGTGCCCACATGCCCGCCCACAGGGCGACGTCCTTCTTCATCGAGGACATCCTGCTGCACAAACCCAAGCCCCTGAGGGAAGCCTTCCCGTCGCCCTTCTCGGGCTCGCTGGCCTCCCGAATGCCACTGCTGGAGTATGGATACCCCCTCATGCCCACCCCCATCCTCGCCCCACATCCGCATCACCCGCTCCACAAAGCCGAGCATCATCCCTACTTCTTCACCTCGGGTATGCAGATGCCCTCGTTGTTTCCTCCTCACCCGGAGCTGCCCGGGAAGCACTGCAGGCGCAGGAAGGCACGCACCGTATTCTCGGATTCGCAGCTGTCCGGACTGGAAAAGCGCTTCGAGCTGCAGAGATACTTGTCCACCCCGGAGCGCGTGGAGCTCGCCACGGCACTCAGCTTGTCAGAGACACAGGTGAAGACCTGGTTTCAGAACCGCAGAATGAAACACAAGAAGCAGCTGCGGAAGACGCAGGATGAGCAGAAAGCGCCCGGAGAACAGCTGGACAGATGCGCGGAGACATCGAGCGAGAGCGAGCAGGAGCGGAGGGGAGCGGCGGACGGCAGGAGGAGTCCGGACACGTATACACTGGAAGAGAACGACGACGAGGTGGACATCGAGGAGGACATCTGCTCTCCTGACCATTTACTATAGACCTGCTCCTCCTCACTCTGTACATGTGTATACGGATTATTGCCAGTTTAGATAGGACACGatattcactttttttctctgattttttatAAGAGAACAGACTCCTAACGCTGTGTCACTAAAGCGCTTTCAACCAACATGCATTATCAGCAAAATTCACTTAGGAGGACTTTCCCCCTAAAATCTACATTATTTAAGAATAATGCATGaccattatgtattattattattattattattattattattatattattattattattaccacttGGTTGTTTTAAGGGTTTTAAAGGGTCACCTGTAATGACTCACTTTGTGAATATGGGGGTAGTAAATATTTTATGGACAATCTGTAAATAGCAGCGGGATATTTAGcacttgtttaaagaacaatgGATCGGTGGATCAGCTGAGTTTCTCCTACACTGTGTCGCCTTTTCCATTTTCACCATACTGCATTCTGTTCAAAACCcactaatgttaaaataatgtacagtaaatgaatTATGTAACAAAACATTTGTTGCAAA

Function

symbol description
bsx Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within pineal gland development. Predicted to be located in nucleus. Is expressed in forebrain. Orthologous to human BSX (brain specific homeobox).

NR:

description
brain-specific homeobox protein homolog

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007420 brain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24874 BSX; brain-specific homeobox protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258116.3 True 1417 mRNA 0.51 3 27591571 27594524

Neighbor

gene id symbol gene type direction distance location
zpr1 zpr1,LOC107693980,LOC107747003,LOC107751399,LOC107577081 coding downstream 51861 27528660 ~ 27539710 (-)
LOC103027279 NA coding downstream 73009 27511131 ~ 27518562 (-)
vps11 vps11,LOC107691631,LOC107744603 coding downstream 98205 27480659 ~ 27493366 (-)
LOC103044875 NA coding downstream 124897 27447351 ~ 27466674 (-)
LOC103045184 NA coding downstream 126708 27464039 ~ 27464863 (-)
LOC103041089 lim2.1,LOC103041089,LOC108423752,LOC107579014 coding upstream 5568 27600092 ~ 27606283 (-)
LOC103039144 LOC108423784,LOC108277316 coding upstream 816488 28411012 ~ 28570105 (-)
panx3 panx3,LOC107747045,LOC107686209,LOC107589683,LOC107579026,LOC107691702 coding upstream 1345067 28939591 ~ 28949916 (-)
pknox2 pknox2,LOC107691639,LOC106567647,LOC106603668 coding upstream 1359515 28954039 ~ 28998439 (-)
robo3 robo3,LOC107751391,LOC107577175 coding upstream 1564516 29159040 ~ 29364276 (-)
G179572 hyou1,LOC107588517 non-coding downstream 83594 27505695 ~ 27507977 (-)
G179528 NA non-coding downstream 575605 27015745 ~ 27015966 (-)
G179524 NA non-coding downstream 580753 27010524 ~ 27010818 (-)
G179490 NA non-coding downstream 702486 26884446 ~ 26889085 (-)
G179487 LOC108424537 non-coding downstream 712148 26877576 ~ 26879423 (-)
G179596 NA non-coding upstream 68463 27662987 ~ 27663294 (-)
G179597 NA non-coding upstream 72235 27666759 ~ 27667611 (-)
G179642 NA non-coding upstream 93602 27688126 ~ 27691388 (-)
G179651 NA non-coding upstream 318306 27912830 ~ 27964374 (-)
G179669 NA non-coding upstream 793448 28387972 ~ 28389380 (-)
G179578 LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586 other downstream 24879 27561845 ~ 27566692 (-)
G179583 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 66183 27524328 ~ 27525388 (-)
LOC103038646 zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012 other downstream 67436 27523131 ~ 27524135 (-)
ift46 ift46 other downstream 113593 27470086 ~ 27477978 (-)
G179569 NA other downstream 148255 27440231 ~ 27443316 (-)
G179816 NA other upstream 1256166 28850690 ~ 28851105 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other upstream 3352422 30946946 ~ 30957767 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other upstream 4299678 31894202 ~ 32071924 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other upstream 4645655 32240179 ~ 32262598 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other upstream 4841801 32436325 ~ 32584343 (-)

Expression


Co-expression Network