LOC103043364 (LOC107691633,LOC107751398,LOC108423781,LOC107693988,LOC107597532)


Basic Information

Item Value
gene id LOC103043364
gene name LOC107691633,LOC107751398,LOC108423781,LOC107693988,LOC107597532
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 27561863 ~ 27566576 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258124.3
ATATAGATGTTCTAGAACATTCGCTTGTTCTCTCTGCAGCAGCGAGGTACGGCAGGCACCGCCTCACGACAACTCCAGTCTTCATCTGTCTCTGTTCAAATCATTTGAAACCATGTCTAAAGGACCAGCTGTCGGTATTGATCTGGGGACCACATACTCCTGTGTTGGAGTCTTCCAGCATGGCAAAGTTGAAATTATTGCCAACGACCAAGGAAACAGGACCACGCCAAGCTATGTGGCCTTCACAGATACCGAAAGACTGATTGGTGATGCAGCCAAGAACCAGGTTGCTATGAACCCTACCAACACAATTTTTGaTGCCAAAAGACTGATTGGCCGAAGGTTTGATGATGGAGTTGTCCAGTCTGACATGAAGCACTGGCCTTTCACTGTAATAAACGACAGCACCCGCCCCAAAGTCCAGGTTGATTACAAAGGCGAGGCCAAGAGCTTCTACCCTGAGGAAATTTCATCCATGGTGCTTGTCAAAATGAAGGAAATTGCTGAGGCCTATCTTGGAAAGACCGTCACAAATGCTGTGATCACAGTGCCTGCCTACTTCAACGATTCCCAGCGTCAGGCTACTAAGGATGCTGGAACCATCTCTGGCCTGAATGTTCTGCGTATCATCAATGAGCCAACTGCTGCTGCAATTGCTTATGGTCTGGACAAAAAGGTTGGTTCAGAGAGGAATGTCCTCATTTTTGATCTTGGCGGTGGCACCTTCGATGTGTCCATCTTGACCATTGAAGATGGTATCTTTGAGGTCAAATCCACCGCTGGTGACACTCACTTGGGCGGAGAAGACTTCGACAACCGTATGGTCAACCACTTTATTACAGAGTTCAAGCGCAAGCACAAGAAGGACATCAGCGACAACAAGAGGGCTGTCCGTCGTCTGCGTACTGCCTGCGAGCGCGCTAAGCGCACCCTGTCCTCCAGCACTCAGGCCAGCATTGAGATCGACTCCCTTTATGAGGGTGTTGATTTCTATACCTCAATCACCAGGGCTCGCTTTGAGGAGCTCAATGCTGATCTCTTCCGTGGTACCTTGGACCCAGTTGAGAAGTCTCTCCGTGATGCCAAAATGGACAAGGCTCAGATCCATGACATTGTCCTGGTTGGTGGTTCCACTCGTATCCCTAAGATCCAGAAGCTCCTGCAAGACTTCTTCAACGGCAAAGAACTGAACAAGAGCATCAACCCCGATGAGGCTGTGGCTTATGGCGCAGCTGTCCAGGCTGCCATCCTCTCTGGAGACAAATCAGAGAATGTCCAggacctgctgctgctggatgtcacCCCTCTGTCTCTTGGTATTGAGACAGCTGGTGGAGTCATGACCGTTCTAATCAAACGTAACACAACAATCCCAACCAAGCAGACCCAGACCTTCACCACCTATTCAGACAACCAGCCTGGTGTGCTGATTCAGGTGTATGAGGGTGAGCGTGCCATGACCAAGGACAACAACCTTCTGGGCAAGTTTGAGTTGACTGGAATCCCCCCTGCTCCTCGTGGTGTTCCCCAGATTGAGGTCACCTTTGACATTGATGCCAACGGCATCATGAATGTGTCTGCTGCTGACAAGAGCACTGGCAAAGAGAACAAGATCACAATCACCAACGACAAGGGCCGTCTCAGCAAGGAGGACATTGAGCGCATGGTGCAGGAGGCAGAGAAGTACAAGGCAGAAGATGATGTACAGCGTGACAAGGTGTCTTCCAAGAACAGCCTGGAGTCTTATGCCTTCAACATGAAGTCAACAGTTGAGGATGAGAAACTGAAGGGCAAGATCAGTGATGAGGACAAGCAGAAGATCATGGACAAATGCAACGAAGTGATCAGCTGGCTTGACAAAAATCAGACGGCTGAGAGAGACGAGTTTGAGCACCAACAAAAGGAGCTGGAGAAGGTCTGCAACCCAATCATCACCAAACTGTACCAGAGTGCCGGAGGCATGCCTGGTGGAATGCCTGATGGTATGCCTGGTGGCTTCCCAGGAGCTGGTGCTGCACCTGGTGGTGGTGGATCTTCTGGACCAACCATTGAGGAGGTTGATTAAGCCATTCCAAACCTGCTCTACCTCCACAGCAATGTTTACTGTTCTAACCCTCTGTAGCAGAATTCCTGTTAGACTCTCGGTTATGGTGCTTAGTTTTTGGCTGGGATTCTGCTGCAGAGtgactgcagaaaaaaggggaTTAAAGGGTCACTTCCACAACAGGGAACAGATTTTTGTACTTGAATGTTCCATAGTTTATTTATCGACAATTTCACAAGCCTTTTTGCAACTGCCTTGTTTCTTGCCTTGAGGGAAAACATGAATAAATTGACCTCTTCCCA

Function

NR:

description
PREDICTED: heat shock cognate 71 kDa protein-like

GO:

id name namespace
GO:0031101 fin regeneration biological_process
GO:0005524 ATP binding molecular_function

KEGG:

id description
K03283 HSPA1s; heat shock 70kDa protein 1/2/6/8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258124.3 True 2346 mRNA 0.49 9 27561863 27566576

Neighbor

gene id symbol gene type direction distance location
crtam NA coding upstream 1295 27554202 ~ 27560568 (+)
hyou1 hyou1,LOC107577052,LOC107691632 coding upstream 51417 27496115 ~ 27510446 (+)
LOC103046108 dlg2,LOC107747009 coding upstream 118632 26993596 ~ 27443231 (+)
crebzf crebzf coding upstream 573515 26983250 ~ 26988348 (+)
sytl2 sytl2 coding upstream 589462 26941351 ~ 26972401 (+)
c20h11orf63 NA coding downstream 1152 27567728 ~ 27623665 (+)
LOC103040165 LOC108423783,LOC108277314,LOC107746996 coding downstream 106373 27672949 ~ 28385095 (+)
tmem218 tmem218 coding downstream 1524045 29090621 ~ 29098792 (+)
robo4 robo4 coding downstream 1541732 29108308 ~ 29148810 (+)
msantd2 msantd2,LOC107577222,LOC107588693 coding downstream 1849247 29415823 ~ 29421907 (+)
G179370 zgc:194989,hist2h2l,LOC107719244,LOC108277172,LOC107574861,LOC105900366,LOC103356012,LOC107667924 non-coding upstream 37754 27523186 ~ 27524109 (+)
G179441 vps11,LOC107588528,LOC107578557,LOC107691631 non-coding upstream 68522 27492691 ~ 27493341 (+)
G179433 ift46,ck060 non-coding upstream 89142 27470120 ~ 27472721 (+)
G179432 NA non-coding upstream 91913 27469717 ~ 27469950 (+)
G179429 NA non-coding upstream 109794 27451547 ~ 27452069 (+)
G179638 NA non-coding downstream 816385 28382961 ~ 28384209 (+)
G179599 NA non-coding downstream 823189 28389765 ~ 28478787 (+)
G179639 NA non-coding downstream 922751 28489327 ~ 28489645 (+)
G179735 NA non-coding downstream 1046579 28613155 ~ 28613473 (+)
G179745 NA non-coding downstream 1062188 28628764 ~ 28628999 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 36422 27524302 ~ 27525441 (+)
rnasek rnasek,LOC107554319 other upstream 645519 26913750 ~ 26916344 (+)
LOC103024073 LOC108424537 other upstream 682780 26830637 ~ 26879083 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 2304394 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 3107241 24447792 ~ 24454622 (+)
G180235 erg other downstream 3572768 31139344 ~ 31151095 (+)
G180266 NA other downstream 3866622 31433198 ~ 31433909 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 4698422 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 5483666 33050242 ~ 33067932 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 6606348 34172924 ~ 34328970 (+)

Expression


Co-expression Network