htatsf1 (htatsf1)


Basic Information

Item Value
gene id htatsf1
gene name htatsf1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 13439661 ~ 13450272 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259403.3
GGAACTAACGATCTGCCTGCACGTTTAGTCCGGAAGGATATCCAGGACGTACCGGGCTGTAGTGTCTCTGTAGTGTTGTGGCGCTGAGAGATGAGTGGAGACTCAGACGGGAATAAAGAGTTTCATGAACAGCTTCGGCTGCAGGAGCTCTACGGCCAGAAACGGGAGGCTGGAGATGACCCGTTCACATATGTCGATCCAGAGGATGGAACTGTGTACGACTGGGACCATGACAAGAAGGCGTGGTTTCCAAAGATCACAGAGGACTTCATCGCTGCGTATCAGGCAAACTACGGCTTCAGTGAGGATGGAACTCCTGATTCAGAAGCTGCAGGACCCCCCAGTGAAACCTCTGAGAAACCTGAGGAGATGGAGAAGCcagaggaggaaaagaagaaaaacgaGGTGAAGAAGCCAGAGGATGGAAAGCAGCCAGAAATATCCTCCACTAAAGAGGGAAaacaaaaaggagaaaaaagaaaagcagaaccAGGCTGGTTTGATATTGAAAAAGATAAGAACACTAATGTTTACGTGTCGGGTCTTCCTCCTGATATAACTCCTGATGAGTTTGTGGAGGTGATGTCTAAGTGTGGGATCATTATGAGGGACCCGATTACAGAGGAGTATAAAGTGAAGCTGTATAAGGACAGTGATGGAAATCAGAAAGGAGATGGCCTCTGCTGTTACCTCAAGAAAGAGTCTGTGGCTCTTGCAGAGCGTCTGTTGGATGAAATGGAGATCAGAGGCTACAGGTTGCATGTGGAGGCCGCCCGGTTTGAGCTGAAGGGTCAGTACGATGCCagcaagaagaaaaagaagagcaaaGAGTACCGCAAAAAAATGCAGCTGCAGCAGAAGCAGCTGGACTGGAGGCCAGAGAAGACAGCTGATGGGCGTAAAAGACATGAGCGTGTGGTCATCATACAGAACATGTTCCACCCGAAAGACTTTGAGGAAGATCCACTGGAGCTGAATGAGTATCGAGAAGACCTGCGGTCGGAGTGTGAGAAATTTGGTGAGGTCAAGAAGGTCATCATCTTTGATAGGCACCCTGACGGCGTGGCCTCTGTGGCGTTTAAAGAGCCAGAGGAGGCAGACATGTGTCAGACGGTGCTGGATGGACGCTGGTTTGGAGGGAGGAAGCTTTCAGCTCAGCTATGGGATGGAGTCACAGACTATCAGgtgGAGGAGACATCACGGGAACGTGAGGAGAGACTAAAGGGGTGGTCTACATTTCTGGGTGATGAAAAATCTGCTGTGGCTAAAGCCCAAACTAAAGACACTGACGGAGGGAAAACAGAGGAAAGCAGTCAGGGGTCAGAGCCAGCATTAGCCCAGCCCACAAATTGTACACCACCATCACAGGCAGAGGCTGACAAAGCACCAGAACATGGACAGTCCATAGAGGAGCCAGAGGAAGAGGGTGTGGGTTCCACAGACAGCAGCCTTGCAGGCAGCGATGACGAGGCTTAAATCCagaatttaaaaacacaacattttctGAACATTCCCATTTTAAACATTGATCTTTGATTGCTGCCCACAGTCTGCCTACTTCCTCAGATGCTGTTGTGCTTTTGAACAAGCCTTATAGCACACCTAGGCAGTTTAACATCAAGTTTAAGCAGTTTGTTGAGATCTACATTCACCACATTCAGATTCTTATGAATTAGTGTTAACACCAGACCTCTGTTAAATCGAcaaaaatattactaataatgcGCAACCTTTTTAACATGTCATTGCTGTTCTTCGGAATCAGTATGGGCATTATTACAGCACAGCATAACCTCTCCTTTAGTATCACAAaactgtttaacacttttaacccTTTAAGCCCTTTAACTTTAACTGCTTGTTATTTAACAGAAGCTACATTACAGCAGGTACTGAACAATTAAGGCGAttgaataatatattttacatcaaaGATTTATTCATTACATTACTTCGTAAAACTGCTTAACTACAGCTACcgcagtgtaacatttaaaatcgtaaataaaaaagtgaatccTAAATATACCagcacaaacatgcacacatgcagtgtgggtgtgtgtcctGTCATATCAAAAGCTGGGTAAGCCCCGAGTCAGTGATGTGGAATTGGATTGTAAAACAGCCATTGTGTACAAATTCTCTCATAATGATAGACTCCTGTTTGTATTTTCTGGAGTGGagtttataattaaaacaaatgtgtgaaagtgtctA
>XM_022681082.1
GGAACTAACGATCTGCCTGCACGTTTAGTCCGGAAGGATATCCAGGACGTACCGGGCTGTAGTGTCTCTGTAGTGTTGTGGCGCTGAGAGATGAGTGGAGACTCAGACGGGAATAAAGAGTTTCATGAACAGCTTCGGCTGCAGGAGCTCTACGGCCAGAAACGGGAGGCTGGAGATGACCCGTTCACATATGTCGATCCAGAGGATGGAACTGTGTACGACTGGGACCATGACAAGAAGGCGTGGTTTCCAAAGATCACAGAGGACTTCATCGCTGCGTATCAGGCAAACTACGGCTTCAGTGAGGATGGAACTCCTGATTCAGAAGCTGCAGGACCCCCCAGTGAAACCTCTGAGAAACCTGAGGAGATGGAGAAGCcagaggaggaaaagaagaaaaacgaGGTGAAGAAGCCAGAGGATGGAAAGCAGCCAGAAATATCCTCCACTAAAGAGGGAAaacaaaaaggagaaaaaagaaaagcagaaccAGGCTGGTTTGATATTGAAAAAGATAAGAACACTAATGTTTACGTGTCGGGTCTTCCTCCTGATATAACTCCTGATGAGTTTGTGGAGGTGATGTCTAAGTGTGGGATCATTATGAGGGACCCGATTACAGAGGAGTATAAAGTGAAGCTGTATAAGGACAGTGATGGAAATCAGAAAGGAGATGGCCTCTGCTGTTACCTCAAGAAAGAGTCTGTGGCTCTTGCAGAGCGTCTGTTGGATGAAATGGAGATCAGAGGCTACAGGTTGCATGTGGAGGCCGCCCGGTTTGAGCTGAAGGGTCAGTACGATGCCagcaagaagaaaaagaagagcaaaGAGTACCGCAAAAAAATGCAGCTGCAGCAGAAGCAGCTGGACTGGAGGCCAGAGAAGACAGCTGATGGGCGTAAAAGACATGAGCGTGTGGTCATCATACAGAACATGTTCCACCCGAAAGACTTTGAGATACTGGGTTGTGCAATACGAGTCCATTTTTTCCCCTGCTGCCCAAAAGGTTCCTCAGAGGCTTACTTTTGGGAAGATCCACTGGAGCTGAATGAGTATCGAGAAGACCTGCGGTCGGAGTGTGAGAAATTTGGTGAGGTCAAGAAGGTCATCATCTTTGATAGGCACCCTGACGGCGTGGCCTCTGTGGCGTTTAAAGAGCCAGAGGAGGCAGACATGTGTCAGACGGTGCTGGATGGACGCTGGTTTGGAGGGAGGAAGCTTTCAGCTCAGCTATGGGATGGAGTCACAGACTATCAGgtgGAGGAGACATCACGGGAACGTGAGGAGAGACTAAAGGGGTGGTCTACATTTCTGGGTGATGAAAAATCTGCTGTGGCTAAAGCCCAAACTAAAGACACTGACGGAGGGAAAACAGAGGAAAGCAGTCAGGGGTCAGAGCCAGCATTAGCCCAGCCCACAAATTGTACACCACCATCACAGGCAGAGGCTGACAAAGCACCAGAACATGGACAGTCCATAGAGGAGCCAGAGGAAGAGGGTGTGGGTTCCACAGACAGCAGCCTTGCAGGCAGCGATGACGAGGCTTAAATCCagaatttaaaaacacaacattttctGAACATTCCCATTTTAAACATTGATCTTTGATTGCTGCCCACAGTCTGCCTACTTCCTCAGATGCTGTTGTGCTTTTGAACAAGCCTTATAGCACACCTAGGCAGTTTAACATCAAGTTTAAGCAGTTTGTTGAGATCTACATTCACCACATTCAGATTCTTATGAATTAGTGTTAACACCAGACCTCTGTTAAATCGAcaaaaatattactaataatgcGCAACCTTTTTAACATGTCATTGCTGTTCTTCGGAATCAGTATGGGCATTATTACAGCACAGCATAACCTCTCCTTTAGTATCACAAaactgtttaacacttttaacccTTTAAGCCCTTTAACTTTAACTGCTTGTTATTTAACAGAAGCTACATTACAGCAGGTACTGAACAATTAAGGCGAttgaataatatattttacatcaaaGATTTATTCATTACATTACTTCGTAAAACTGCTTAACTACAGCTACcgcagtgtaacatttaaaatcgtaaataaaaaagtgaatccTAAATATACCagcacaaacatgcacacatgcagtgtgggtgtgtgtcctGTCATATCAAAAGCTGGGTAAGCCCCGAGTCAGTGATGTGGAATTGGATTGTAAAACAGCCATTGTGTACAAATTCTCTCATAATGATAGACTCCTGTTTGTATTTTCTGGAGTGGagtttataattaaaacaaatgtgtgaaagtgtctA
>XM_022681083.1
ATCACCGTATTAAACAATATGAGTGGAGACTCAGACGGGAATAAAGAGTTTCATGAACAGCTTCGGCTGCAGGAGCTCTACGGCCAGAAACGGGAGGCTGGAGATGACCCGTTCACATATGTCGATCCAGAGGATGGAACTGTGTACGACTGGGACCATGACAAGAAGGCGTGGTTTCCAAAGATCACAGAGGACTTCATCGCTGCGTATCAGGCAAACTACGGCTTCAGTGAGGATGGAACTCCTGATTCAGAAGCTGCAGGACCCCCCAGTGAAACCTCTGAGAAACCTGAGGAGATGGAGAAGCcagaggaggaaaagaagaaaaacgaGGTGAAGAAGCCAGAGGATGGAAAGCAGCCAGAAATATCCTCCACTAAAGAGGGAAaacaaaaaggagaaaaaagaaaagcagaaccAGGCTGGTTTGATATTGAAAAAGATAAGAACACTAATGTTTACGTGTCGGGTCTTCCTCCTGATATAACTCCTGATGAGTTTGTGGAGGTGATGTCTAAGTGTGGGATCATTATGAGGGACCCGATTACAGAGGAGTATAAAGTGAAGCTGTATAAGGACAGTGATGGAAATCAGAAAGGAGATGGCCTCTGCTGTTACCTCAAGAAAGAGTCTGTGGCTCTTGCAGAGCGTCTGTTGGATGAAATGGAGATCAGAGGCTACAGGTTGCATGTGGAGGCCGCCCGGTTTGAGCTGAAGGGTCAGTACGATGCCagcaagaagaaaaagaagagcaaaGAGTACCGCAAAAAAATGCAGCTGCAGCAGAAGCAGCTGGACTGGAGGCCAGAGAAGACAGCTGATGGGCGTAAAAGACATGAGCGTGTGGTCATCATACAGAACATGTTCCACCCGAAAGACTTTGAGATACTGGGTTGTGCAATACGAGTCCATTTTTTCCCCTGCTGCCCAAAAGGTTCCTCAGAGGCTTACTTTTGGGAAGATCCACTGGAGCTGAATGAGTATCGAGAAGACCTGCGGTCGGAGTGTGAGAAATTTGGTGAGGTCAAGAAGGTCATCATCTTTGATAGGCACCCTGACGGCGTGGCCTCTGTGGCGTTTAAAGAGCCAGAGGAGGCAGACATGTGTCAGACGGTGCTGGATGGACGCTGGTTTGGAGGGAGGAAGCTTTCAGCTCAGCTATGGGATGGAGTCACAGACTATCAGgtgGAGGAGACATCACGGGAACGTGAGGAGAGACTAAAGGGGTGGTCTACATTTCTGGGTGATGAAAAATCTGCTGTGGCTAAAGCCCAAACTAAAGACACTGACGGAGGGAAAACAGAGGAAAGCAGTCAGGGGTCAGAGCCAGCATTAGCCCAGCCCACAAATTGTACACCACCATCACAGGCAGAGGCTGACAAAGCACCAGAACATGGACAGTCCATAGAGGAGCCAGAGGAAGAGGGTGTGGGTTCCACAGACAGCAGCCTTGCAGGCAGCGATGACGAGGCTTAAATCCagaatttaaaaacacaacattttctGAACATTCCCATTTTAAACATTGATCTTTGATTGCTGCCCACAGTCTGCCTACTTCCTCAGATGCTGTTGTGCTTTTGAACAAGCCTTATAGCACACCTAGGCAGTTTAACATCAAGTTTAAGCAGTTTGTTGAGATCTACATTCACCACATTCAGATTCTTATGAATTAGTGTTAACACCAGACCTCTGTTAAATCGAcaaaaatattactaataatgcGCAACCTTTTTAACATGTCATTGCTGTTCTTCGGAATCAGTATGGGCATTATTACAGCACAGCATAACCTCTCCTTTAGTATCACAAaactgtttaacacttttaacccTTTAAGCCCTTTAACTTTAACTGCTTGTTATTTAACAGAAGCTACATTACAGCAGGTACTGAACAATTAAGGCGAttgaataatatattttacatcaaaGATTTATTCATTACATTACTTCGTAAAACTGCTTAACTACAGCTACcgcagtgtaacatttaaaatcgtaaataaaaaagtgaatccTAAATATACCagcacaaacatgcacacatgcagtgtgggtgtgtgtcctGTCATATCAAAAGCTGGGTAAGCCCCGAGTCAGTGATGTGGAATTGGATTGTAAAACAGCCATTGTGTACAAATTCTCTCATAATGATAGACTCCTGTTTGTATTTTCTGGAGTGGagtttataattaaaacaaatgtgtgaaagtgtctA

Function

symbol description
htatsf1 Predicted to enable RNA binding activity. Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be part of U2 snRNP and U2-type spliceosomal complex. Orthologous to human HTATSF1 (HIV-1 Tat specific factor 1).

NR:

description
tFZR1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K13093 HTATSF1; HIV Tat-specific factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259403.3 False 2220 mRNA 0.45 10 13439661 13450272
XM_022681082.1 True 2292 mRNA 0.45 11 13439661 13450272
XM_022681083.1 False 2220 mRNA 0.45 11 13439661 13448712

Neighbor

gene id symbol gene type direction distance location
LOC103031773 NA coding downstream 557 13434564 ~ 13439104 (-)
f9 NA coding downstream 102201 13328994 ~ 13337460 (-)
LOC103021997 NA coding downstream 161840 13275967 ~ 13277821 (-)
LOC107197005 NA coding downstream 171822 13266674 ~ 13267839 (-)
LOC103041391 LOC108439213 coding downstream 420172 13017526 ~ 13019489 (-)
LOC111195110 NA coding upstream 2988 13453260 ~ 13481137 (-)
LOC103032814 LOC108444522,LOC107701105,LOC107718794 coding upstream 59062 13509334 ~ 13536600 (-)
LOC103034318 LOC103034318 coding upstream 93683 13543955 ~ 13572791 (-)
LOC103047751 LOC108276801,LOC107728853,LOC107577624,LOC107686144 coding upstream 144164 13594436 ~ 13715147 (-)
LOC103021466 NA coding upstream 267590 13717862 ~ 13727146 (-)
G176017 NA non-coding downstream 55137 13383587 ~ 13384524 (-)
LOC111195045 NA non-coding downstream 240700 13197213 ~ 13198961 (-)
G175703 NA non-coding downstream 263370 13175235 ~ 13176291 (-)
G175716 NA non-coding downstream 269538 13168809 ~ 13170123 (-)
G175714 NA non-coding downstream 370129 13065640 ~ 13069532 (-)
G176043 NA non-coding upstream 113534 13563806 ~ 13564134 (-)
G176069 NA non-coding upstream 289324 13739596 ~ 13740266 (-)
G176099 NA non-coding upstream 417534 13867806 ~ 13868388 (-)
G176145 NA non-coding upstream 599559 14049831 ~ 14050301 (-)
G176147 LOC108415819,LOC107588830 non-coding upstream 607896 14058168 ~ 14058447 (-)
LOC111195047 LOC107688027,LOC107751101,LOC107731862,LOC106606817,LOC106579815,LOC107570926,LOC107688028,LOC107689570,LOC107565351 other downstream 32381 13405281 ~ 13407280 (-)
LOC103044870 NA other downstream 185093 13252157 ~ 13254568 (-)
LOC111195039 NA other downstream 432600 13003387 ~ 13007061 (-)
G175707 NA other downstream 442727 12988937 ~ 12996934 (-)
G175647 NA other downstream 541031 12897040 ~ 12898630 (-)
G176058 NA other upstream 221500 13671772 ~ 13674482 (-)
LOC111195111 NA other upstream 296364 13746636 ~ 13748650 (-)
tex14 NA other upstream 324531 13774803 ~ 13814510 (-)
G176146 LOC108415819 other upstream 601290 14051562 ~ 14051961 (-)
G176136 LOC108415819 other upstream 613228 14063500 ~ 14066144 (-)

Expression


Co-expression Network