ppm1e (ppm1e,LOC102780278)


Basic Information

Item Value
gene id ppm1e
gene name ppm1e,LOC102780278
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 14142174 ~ 14222311 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259438.3
cgtgtgagtgtgagagagagagagtgcgagagcgagagtgagagcgagtgtgtgcgtgtgtttgatatagagtgagagagtgaccCAAAAGTAGCAGAGACTCTACATCATCCCccggttctctctctctcttttctctctcctcttttatttctttttctctctctcttttctttctctctccttctctctctccggGAATGAGAAGCGATGGCCGCGTGCGGCAGCGAGGAGAAAACCTACCGGCGTTTCCTGGAGCTTTTCTTGCGGGAGATGAAGCCTCCCCTGCCCGAGGATGGCCCTCTGCCCACCCGGCCTCTATCGGACTCTTTGGCGGAGGATGAAGTGGAGGGGGAGACCCTGGAGCTGTGTCTGCAGCACCTCTGCAAATAtaactgcCCGTTCACACTGGCCGCAGCTTTGGCTCGAGGCACAGCCGACAGTGTCCTGCAGAGCGATCTCTCCGTCTACCATCTCAACAAGAACACTGAAGACGGCACAGAAACATTTCCTCAGATCGAAGCGGTAAAGCTGGCACGGTTAGTGTTTAATAAGCTGTGCGAGACGTGCTGTCTGTGGCTGAAAGGGGTACCGATTCGCCGTCGTGCCCAGCCATACTATGAGACGTCCATCCACGCCATCAAGAATATGAGAAGGAAGATGGAAGACAGACATGTGGTCATCCCAGACTTTAACTCACTCTTTAACCTGCAGGATCAGGAGGAACAGGCGTATTTTGCTGTGTTCGATGGCCATGGAGGTGTGGATGCAGCCACTTATGCCGCCAATCACCTGCACGTCAACCTGGTGAGACAGGAGATGTTCAGCCAGGACCCCGGGGAGGCACTGTGCCGTGCCTTCAAACTGACTGATGAGCGCTTCGTACAGAAAGCAAAGCGAGAGAACCTACGCTGTGGCACTACTGGGGTTGTGACCTTTCTGCGGGGACGTACTTTGTATGTGGCCTGGCTGGGAGACTCACAGGTCATGCTGGTGAAGAAAGGACAACCTGTTGAACTGATGAAGCCACATAAACCAGACAGAGAGgatgaGAAGCAGAGGATCGAGGCGCTGGGTGGCTGTGTGATCTGGTTCGGGACATGGAGAGTAAATGGCAGCTTGTCTGTTTCAAGAGCTATaggAGATTCGGAGCACAAGCCTTATATCTGTGGTGATGCTGACCACATCTCATTCCCACTGGATGGCACAGAGGACTACCTTATCCTGGCCTGCGATGGCTTCTATGACACAATGAATCCGGAAGAGGCGGCACGAGTGGTCAGCGATCACCTGCAGGAGAACAGTGGCGACACCACTATGGTGGCCCACAAGCTGGTGGCCTCGGCCCGTGATGCTGGCTCCAGTGACAACATCACGGTCATTGTGGTGTTCCTCAGGGATCCACGTGCACCCCCACCATCAGAGGAGCCAGAGGAGGAGGGCGAGGAGCCAGAGGAGGAGCCTGTGGAAGAGGAAGCGGAGCCAGAGGAGGAAGAAGGGGAAGAGGAGGAGACCTCACAAAGTGAGCTGGTGTGTCAAGATGGCGGTGGAGAGAATGGTGGGAAGTCTCGCGGCGGCTGGCCCCTCCAGCAGTGCTCGGCTCCGGCCGATCTGGCGTACGAAGACCGCATGGATTCGTTTACGGACAGAACCAGCCTGAGTATCACTGGGCCCAAGCCTTTTACAGAAAAGGGCTGCTTCCAGCTGCCTTCGGAGCCCGGCAGCCCACCAAGCAGAACCTTCAGCCCGGACCTGGGTCCTGGAGGAGGCTGGGTTTGGCGACCTCGCATGGAAGCAGAGGGCATCTGTGGGCTCAGGCATCAAAAACGACCTAAATCTCTAGTCCCACCATTCACAAATTCTGCCACTGGACGTTGGCTAGAGGCGGCTGCCCTCTTTCCTCAGCaagggaggagaaagagaagaatgGAGGGAGCGTCTCTGAAACGGGAGATGAAGAAAAGGCGCCCCATTTTAACGGCCCAGAAAAGCCACTGCCCCTTGAGCCCTCACCCTTATGTGCCCTTTCCCCTCCGCTGTATAGACAGCAGGCCCGGGGTCGCCATGCCTCGCGTAACACATGACGAATACGGGGTCTAAATCCTAAACCTGAATTATGCTCCTCACCTTCCAACACTAGAACACACTCATATCATCCTTCATAAGCTGAAGAACACAATGGGTGCAAACATATTTACATACTGGCATACTGCACATTTAAATGCACACATGTCTTAGGGAAGAAAATAATCTTAAATGTAGACAATTTATCTCATATTTCTTATTGCATGACTGCTGtaataataagaatattattattatatacaaatttacaatatgttgTAAAGTATATGCATATCATACAATTACCTgatataaatattacaaaattgaTTGTAAGAGTAAATACAACTGTCACGTTATAGTATTTGagattataatgtattataaaatataaataatacaatatttaccTTATATTGCAGtacttacagcacttcatagaAGAATAGATGGAACTGATTCACctgatttataaaaatatgagAATTTAATGTAGAATTCTCTGTTTTCAGCAAGGTCTATACTTCTATGACTATTGAAGTAAAATTATCTTCGTGGATGTATTGGAGAtgactgttttaaattatatttaacaaaAGTATTTAATCATTGTCTGAtaatatttatacaatttttattcatattcttACAGCAGTCTCAGAATGAGAAATACTGGATACCCTGCCAAGACTTCAGATGCTGTCACTTGCCAAGAGAGGATTTATTCAGCATCCCTCCTTATGCCTAATCCAGGCCAGCCTGCCACATCTATTAATATTCACATTATACAGGTTGAGCAGAAGCATCACCTGGACCACTTTATGGTCAAGAACTTCACTCTCACCATCCTCCATCTATTTCCTTCACATCAGACGTGATCACGAAAAAGCCAAGAGTTATTTCATAGTCAGTGAGGGTGAGATCTTTGAGGTCAGGGAGCTGAATATAGTTTCTTTACTGACTGTATCAATAGGCCTGAACTTTCCCACCCTTTGATTTCACCTCTGAAACCTTAACCTCAGTATTCAGAGTTTATTTTATCTTCATTTTcccatgtgtgtgtgggtgtgtgtttgaattTGGCTTATTTTGGTTTAGTTGCGAGGCTGCTATGTTTGTAATTCCTTAGGTATGAAATAAAGGGACAGTTTTCAAATTAAAGAGATAATTATACTGATCCAGGGTGGATGGAATACATGATGGTTTGTGCATTATATTGTGACAATATTTAACAATTCATAATTTTCCAAAATAAACTATTCCCAGGCTCCACCCacaaatgtgttcttttatagCTATTGTTTCTTGATGAACAAGCTTACAGGAAAACTGGTAAAAATCCTATTTAATGCTAATAAAACACCATAGCTCCTCCccactgtatattataatatctaCTTTTCACCGTAATAAGGgattggaaatatatatatatatatatatatatatatatatatatacaaatttgCCAGCATTGCTAATGTTATTTACTAAAATACAAATTCATTAGCATCATGTGAAATCCACAATTCACTTTATTTAGCAGAGTAACATACTTATGGCAAAATTTCTAAgcaaattattaattgacacttgTTAAGAaattattattcacaaatgtaacTAATgcctcaattcattattataaacAATTATAGCATTATATTTAGCATTTTGTGCTGTTTAGTAATGTCTTAATTAGTGTCAATAAATAATTagttaaccatttaacaatgtttattactgttgtgaCCCTTACTGTAAAGTGTAGAGTGTAACAGATACAGTTCTGCATTTACTATCCAGTATAGAAAAAGTATAGGTAGAAACCTATTTAGACAATCTTACAATCTTTGAAACcaaagaaagaaatacagcaTAGTTCTACATGCTGCTTTACAACACAAGTCATGTTTTTCTTTCAAGTTTGCCTTTTCTCATGTTCGCTATTTTCTTATTCAGAATATCAGAACAAACACAGACTAAATCCAGACTGTCTGCCGCATTCCATCAGCTGAGTGGTATTATTGAACAGTGGAGATGTTTAGGAACCACATAATCTCAGCAAAGAAGTGTCAGACCGAGTAAATTTACAGATGTCCAATGCTTCAAAACCTTCCCCAAAGCTCTTCTGACCCTGTAAACTGCAGAGCTCCACACATGCTGTCAGAGCTGCATATTAATGTCTGTAAATTTAGAATGGTATACTATAAATGCTGaatctgtaaatgtaatgtgctgGTGTCCCAGTAcaaaatagtgtatatagtgtattatcACTTCTGCAGTGCCGGCCTACACTAATAGTATTCATAAAGGCTACCATCACTTAACAGATATTCCATGAAGTACACTGCCCATGGGATATGTGTACATACACAGAAGGGTAGGCGAGAAGGAGCATGAGCATCAGTAACCGAGGCCTCCACAAACATGGCACAACTGACAATgctgaataaacacaaaacGTGGTTAATTAGCATACTAATATATAATGACATTAAAATCATAAcccattgattttttttgttaattacatttacatataaatacttttgtaaATCATAACACACTATGAATGTAGGTATTGTAATATACACtgaggtggagctacagtcgCTCATTAGGGtaaacatatgtatatattaataacactcttaTTGTAGGTATTGTTATGATGTACTGAAGTGGAGCTACAGGCTCTCGTTATGtttgaattacatttttatcaGTATAAAGTTGTAAAGGTTGTCCAGCCAAGCAACAGAGGCTTTAGAACACATTTGTGGTCTGGATAGTGCTATTCCCATAGCAAATGAATGCATCATGAATGAACACAGTGCTCATCATAGGCTGAATCTGGTGGAGTAGAATGTATATCAAGATCCAGAATGTTTTCAGTTCTTTCAGACCTCCACACGttcatacgcacacacacacacacacacacacacacacacacacacacttaatagcCAAATGACTGGGATGATTAAAGATTAGATTTTAGCCTGAACTTTTTGGAATGTATCTGTATTTTCCCTTCAGTCTTAATATTTATcgtgcaacttttttttctggttagtttgtctttcttttttttaattacagcctCTTCAACAGCATATCTAAATTTTGCTTCCATCAAAATACAACACACCAAACTGcataatcatgtttttaaaatatgaaacacttattttagtcatttttgacATGTAAGGAAAACGTGGTGTTGGTTTGTGCTCTCAGGCAATTTTGGGGCACAGATTGATCCTGTAGCTAGGCTTAAGCTAGGCTTATgaaataatacaactattttGTCTGCCTTTCTGTTCTTTATCATAGTATGTAATGTCTCTGAAAAAGACTTACCCCTATTTCCCTAAGTTATGTCTCGGGGCacagatatatatacatatatatatatctatatatattgaAATTGTAGTAAAATCATAtatgtgcgtgtgtctgtgtgtgtgtgtgaggatgtaTGTGTTTAACAGTCGGAATGTCTATATAATGTCTTTTATTATATGTGTTAGCTAAGTTACCATTGTTAATTCAAATAGATACAGAAGTATGTATCAAGCTCCTTCTCCATGCTCCATGTTTACCCCATGCATTACCACTGTGACCATCAGCGGAGCAGGACGATATTTCTGATCCACAGTTATCGCCAACACCCTCCTGCAAGTGGTCTGAAACACATTATTGGCACCAGTGTGGGAAACAGCCTCCTTCGTCTCCAGGAACCCTGCTTTGGCCGCTTTAGATGGACTTTTGAGATGCAGTAGTGATGGTCAAGCAAACCACACTGAAGACCTACTCTCTTCTTTACTGttccctcactctctccctttctatCTACTTCCCTCGCTCTCTCACCATGTCGTGTTCATGTACTGCTTTCTTTTCCCCCCATAAGCAATAATGAACCTACATAAGCCATGAGTGAGGAGAGACTCTCTTACGGAGACCGGAAAACAAAGCAGAAgggaattttacattttcagtcGAGACAAAGGAACgattttaaaaaggaaatatacaaaaaaatatgtgttaCTGGTGGTCATCACTGTATTCTATTAAAGCTGTgtataaagacataaaaacactaTTGTACTCTCTTACAGACCTGAATTGATGATAGCCATACACCCTTTGCAGCCTGGTGCCTAGCTCACACTACAGACTGGGCATGCTGCTGATTTCAGGAAAACGGGGCGATTATCCAAGGAACGACACTTCAGAGCCATGGCTCAAACACTTTTCAGTGTAGAGCCGTGTCCAGTAGCCTTTCACACTCTACTACAGACATTTACAAGCTTGAGAAGACTCTGAGGCAAGAGCAAAGTGCTAAAGCAGCTACTGAAAAATTACACTTCCACATTTTTACCCTTACCCCCCAAGATAATGATTAGCCAAAACAAGTACAGTATCTGAAATTTGCCTCTTCAGTTTTAGCACcggagctatgaggctaaagTAGCTATTGTAGCTGCTGCTATTGTTTTCAGTTGTGCTAATGCTACATTCTTTCCAAACTGTGGTTAATGTGTAGTTCTTAAATGTATCTGCATTCGAAATACGGTGTTGTTTATTcaggtattgattttttttaaatataaatgtaaggTCTAGCAATTCTGGTGCTATTTGACCAGCATATCCATGTTCAAAACACAAGAAATGCTGTTTTTGCTGATGACTGGTTTGCTATGCCATTCTACACTGGATGTTAGAGAATATGAAtacagttcagtcaaaaataaggTACAGAATGGCAGAgtgacaattattattattagttcctgtttttgaaaaatatcaACAAAATACCATATCATTCACAAATAGAAAGTCAACAGCCTTGTACGTAGTACATGCTATAACTTGTAGTTCTATGTGAGGCATTTCGTTGACTTCAGCTTGTTGGATGAgctgaaaatatgttttatttcattggGGCTTGAATGAAGAACAAGATGCTAACTAAGTGATAGCATCATTTAGCTTCAGTGCTGAAAGCTAAAAAAGCAAACCTCAGATACTAAAAGTCTTAACTTCTAAACCGTTAGTAAGggtaaagtgtgtaaattaattttttgGTCGAGATCTGTCAGTGATCTCACTGCAGAACATGGAGTCCTGTCGAAGCTGGAGGGAGTTTTTGGATTCACTATGGTTTTTGGCAGAGTGTAAGCACCGTTAGCCATGTCTCCAACCATGGCTAGCCTTTAAAACGTACAAAAGGAAAGGGAACCCTCACACATTGTTGTTGTATCTTTAGGAGTTTTTACTTTTCacactttaattttaaaatgatgaatgaTTCCCCCAATGCTGCCTTTTTTCCTGCTACAGGAAATCCCTCTCATCCTCATCACGTccacttcctcctcctcctccctttaCCTCCCATAGCTGCAAATTAGCTcacagtaaaatagtaaaaactgTATGTGTATCTTCTGTGGTACTGTagtattataaatatgtatatctatAACTGGTGACTATCATGTATAAAGTGTATAAGAACCTTG

Function

symbol description
ppm1e Predicted to enable kinase activity; metal ion binding activity; and protein serine/threonine phosphatase activity. Acts upstream of or within dephosphorylation. Located in nucleus. Is expressed in central nervous system. Orthologous to human PPM1E (protein phosphatase, Mg2+/Mn2+ dependent 1E).

NR:

description
protein phosphatase 1E-like

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
K17501 PPM1E, POPX1; protein phosphatase 1E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259438.3 True 7619 mRNA 0.41 7 14142174 14222311

Neighbor

gene id symbol gene type direction distance location
LOC103039046 myl10,LOC108413922,LOC107734439,LOC108276823,LOC107577538,LOC107728843,LOC107588876 coding downstream 203900 13935026 ~ 13938274 (-)
mdh2 mdh2,LOC107588934,LOC107691667 coding downstream 377991 13756244 ~ 13764183 (-)
LOC103021466 NA coding downstream 415028 13717862 ~ 13727146 (-)
LOC103047751 LOC108276801,LOC107728853,LOC107577624,LOC107686144 coding downstream 427027 13594436 ~ 13715147 (-)
LOC103034318 LOC103034318 coding downstream 569383 13543955 ~ 13572791 (-)
rad51c rad51c coding upstream 7246 14229557 ~ 14244100 (-)
zbtb21 zbtb21 coding upstream 26357 14248668 ~ 14257220 (-)
LOC103043578 LOC108411121 coding upstream 63627 14285938 ~ 14314833 (-)
LOC103045094 NA coding upstream 470369 14692680 ~ 14714840 (-)
LOC103045405 LOC103045405,LOC108442105 coding upstream 493200 14715511 ~ 14720986 (-)
G176154 NA non-coding downstream 36096 14101882 ~ 14106078 (-)
G176134 rabgef1,LOC107734461 non-coding downstream 43496 14096250 ~ 14098678 (-)
G176139 rabgef1,LOC107734461,LOC107728875,LOC107577469 non-coding downstream 52059 14087099 ~ 14090115 (-)
G176150 kctd7,LOC106603469,LOC108415927 non-coding downstream 62087 14076346 ~ 14080087 (-)
G176148 LOC108415819 non-coding downstream 78955 14062794 ~ 14063219 (-)
G176179 NA non-coding upstream 51157 14273468 ~ 14274362 (-)
G176184 NA non-coding upstream 96410 14318721 ~ 14352127 (-)
G176203 NA non-coding upstream 349699 14572010 ~ 14572473 (-)
G176248 NA non-coding upstream 506027 14728338 ~ 14728932 (-)
G176277 NA non-coding upstream 617195 14839506 ~ 14844568 (-)
G176138 NA other downstream 69490 14069749 ~ 14072684 (-)
G176136 LOC108415819 other downstream 76030 14063500 ~ 14066144 (-)
G176146 LOC108415819 other downstream 90213 14051562 ~ 14051961 (-)
tex14 NA other downstream 327664 13774803 ~ 13814510 (-)
LOC111195111 NA other downstream 393524 13746636 ~ 13748650 (-)
LOC103044788 wnt11,wnt11r,LOC107686210,LOC107589704,LOC107747044 other upstream 434959 14657270 ~ 14670670 (-)
LOC111194989 NA other upstream 1305985 15528296 ~ 15565463 (-)
stoml2 stoml2,LOC107686459,LOC107688641,LOC107569390,LOC106563216 other upstream 1558244 15780555 ~ 15790644 (-)
G177526 NA other upstream 3949538 18171849 ~ 18174525 (-)
G177568 NA other upstream 4175271 18397582 ~ 18403008 (-)

Expression


Co-expression Network