atg101 (atg101,LOC107751375,LOC107686213,LOC107589731,LOC107691654,LOC107577413)


Basic Information

Item Value
gene id atg101
gene name atg101,LOC107751375,LOC107686213,LOC107589731,LOC107691654,LOC107577413
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 14244212 ~ 14247659 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259439.3
CCGACTCCGACGTCTGTTTACAAAAATACTGAAGAGGACCGAGCCTGGAAAAATGATCTAATCCAAAATACGCTTAAAAAGTAGAGATGTGATCAAATAAAATATCAGACGGGCTTTATTATATTACTTTGGTAGTTACCAGACTGAACCCTGAGCTGGTTTATGGTTGTTAAAGCGCTGGGCTGAAGCGCTGCTGCTCCTGGCATTAgctgctcttctctctctctctcactcgcttaaACTGAACATTTACTGAAGGGGTTCTTCTCTCTCCAGGATGAACTGCCGCTCGGAGGTGCTGGAGGTTTCTCTGGAGGGGCGGCAGGTGGACGAGGCCTTGCTGTCTTTGCTCCACACCATCCTGCTGCACCGCAGCACGGGCAAGTTCCACTATAAGAAAGAGGGAACCTACTCTATCGGTACGGTCGGCACTCAGGACACGGACTGCGACTTCATCGACTTCACTTTCGTCCGAGTGTCTTCAGATGAGCTAGACCGGGTCATCAGGAAGGCCGTGACCGAGTTTAAGGATGCCCTTGGTAACTCTGGAAGCGATGGCATGGGCCAGATCTCACTGGAGTTCTACCAGAAGAAGAAGTCCCGCTGGCCATTTTCTGACGAGTGTATCCCCTGGGAGGTGTGGACCATAAAGGTCAACGTGGTGAACCTGGCCAACGAGCAGGAACGACAGATCTGCCGGGAGAAAGTGGGCGAGAAGCTGGGTGAGAAAGTTATCAACATTGTGGAGGTCATCAACCGACACGAGTATCTGCCAAAGATGCCCACCCAGTCCGAGGTCGACAATGTTTTTGACACAAGTCTGAAGGACGTCCAGCCTTACTTATACAAAATCACCTACCAGATCACAGATTCCCTCGGAACATCCGTGAGCACCACGATGAGACGGCTGATCAAAGACACTTTAGCTTTGTGAgagatgtttatatttattgtatatgcTTGGAAATGGGTTAGAGAAACTGTGATTTGTGTCTTAAGctttcttctttagttttgcacaGGAATCTAATgtagctaaaataaaataaagtctgTGCCACTAGACTTCTATTGCACGTAAGTTACATTGGCCTTGTAGCTCCTTGCAGCTGATTGACTCAACCGGGGTaattgtgtatattttttttttctccaaaaccTTCCTTTAAATTGAGTGAATAATCAGGTCCCACcagtcaaatattttatttgttatgaGTATAAATTGTCACTTTCATCTTTCATCCTCTTCACATATGTAATACTAATGGATAAATCTTTGAGTTTAACAGACACTGCTTACTAAGTTTGaaagggctgcacaatataggACAATACTGTAATTCCTTTTTTCTGTAACATCattctgtgtgggttttttttttgttttcaggaaAAACACTTCAGTAATTGACATTGTGTTGCTATGCCTTGCATATCTAATGACAcctataatgtaatgtagtaaaTATGGTACTGCATCATTTTGACTTTATTTGACTTGGTTGATTACATATGTAAGTTGATACttaaacacaaactaaaacCTATCAGgtcctgtgattggtcaggaaGCTTAGGACACATAATACACAAACTGTTTGGAGTTTGTGCAGTATTTCAAAGGCTAAAATCACATTACCGATTCACATATAGTATATTATGCAGCTCTTTTTATTAGAATAGTTAGACAGAAGCATTAAGATTGATGCTAAGATAGCTCTGtctggttgtgttgttttttttctgtgcttgtAAATTCAGCTGCACCTGTTGTTGACTCAAGTTCAGACACAGCTTGTATGCTCTCCATAGAAAGGCACTGACCAAGAGGACGGGACTGTCTGGAGCAGCTGTGAGTACATGCCCATAAGGTTGTCACATGTTAAAGGCCAGTGTTGGCTAGATAGAAAGCCCCCCCCCTTAACTCATTAATGCAGTTAGATCCTCCTTAACCTTCCCAGAGCAAGTGGGGATGGTGTCACCGTTTGTACATTTGATCTCAGAAGAAGTGATAAAGGAGCAGGGCTCTCAATACTTTTGGCCATATAGTGCAAAGAAATCAAACTGTATTTTGACAGGGGCTTTGAAGGAACAGTTCAGTGAAAGATTGCAATGATCATTGACTAGATGCAATTGATCAGCCAAGACATCTGGCATGGTCTTCCTTAGTTAAATATGGAGgatgctaggctaacattgctaacataAACAATGGATGTGCATGCTCACCAGCCTTTTTTGTATAAAGGAAGCCACACCAACATGTTCACTTTGCATCCGTTTGCCAAACACGTTTATAATGTTGTTAGCAACTTCAGCCTAGCATCTCTTCTTGAAAACCTAAAACACACATATCAGATACTAAACACGTCTTGGCTGATCGGCTGTATCTGAGGTCAGTGATCAATGTTcatgttcttctgttttttttttttttcccttacctGCTAGTGGCAGAACATGTTAATTATTAACAGATAAGTTAAAGGCAAAGCATGTGTCCGTCTCTCAAAATTAATGGTCAGTGTGTTTTGATGTGTGATTCTTTTTGGGAAATAAAACAGACTCATCTTTAAACCTTC

Function

symbol description
atg101 Predicted to be involved in autophagosome assembly. Predicted to act upstream of or within autophagy. Predicted to be located in cytoplasm. Predicted to be active in phagophore assembly site. Orthologous to human ATG101 (autophagy related 101).

NR:

description
PREDICTED: autophagy-related protein 101

GO: NA

KEGG:

id description
K19730 ATG101; autophagy-related protein 101

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259439.3 True 2585 mRNA 0.42 2 14244212 14247659

Neighbor

gene id symbol gene type direction distance location
trim37 trim37,LOC107691657,LOC107577452 coding upstream 113522 14101949 ~ 14130690 (+)
rabgef1 rabgef1,LOC107734461,LOC107577469,LOC107728875 coding upstream 145519 14082474 ~ 14098693 (+)
kctd7 kctd7,LOC108415927,LOC107588867,LOC107686134,LOC106603469 coding upstream 166976 14071214 ~ 14077236 (+)
LOC111195113 NA coding upstream 323595 13913928 ~ 13920617 (+)
tbl2 tbl2,LOC107734476,LOC107691705,LOC107728824,LOC107686137 coding upstream 368698 13870329 ~ 13875514 (+)
LOC103043274 NA coding downstream 15735 14263394 ~ 14281729 (+)
mogat2 mogat2 coding downstream 69746 14317405 ~ 14331559 (+)
dgat2 dgat2,LOC107746984 coding downstream 92749 14340408 ~ 14352188 (+)
uvrag uvrag,LOC108413435,LOC108411119 coding downstream 108637 14356296 ~ 14506004 (+)
LOC111195050 NA coding downstream 475324 14722983 ~ 14729064 (+)
LOC103042124 NA non-coding upstream 1069 14142167 ~ 14243143 (+)
G175984 NA non-coding upstream 19513 14178804 ~ 14224699 (+)
G175966 NA non-coding upstream 73141 14114094 ~ 14171071 (+)
G175946 NA non-coding upstream 315095 13920530 ~ 13929117 (+)
LOC111194981 NA non-coding upstream 315095 13926240 ~ 13929117 (+)
G175997 NA non-coding downstream 30069 14277728 ~ 14278568 (+)
G175999 NA non-coding downstream 36568 14284227 ~ 14286973 (+)
G176000 NA non-coding downstream 37643 14285302 ~ 14288274 (+)
G176010 NA non-coding downstream 288609 14536268 ~ 14536547 (+)
G176216 NA non-coding downstream 422625 14670284 ~ 14670678 (+)
LOC103039555 LOC108415819 other upstream 174850 13951405 ~ 14069362 (+)
LOC103038733 bcl7b other upstream 355168 13798639 ~ 13889044 (+)
prdm15 LOC108413920,LOC106511912 other upstream 375357 13847262 ~ 13868855 (+)
G175900 NA other upstream 558649 13679359 ~ 13685563 (+)
LOC111195048 fgf13b,LOC108444526,LOC107555168,LOC107718748,LOC107548853,LOC107720625,LOC107693932 other upstream 825796 13353768 ~ 13418416 (+)
LOC103047397 unc13b,LOC107686461,LOC107688005 other downstream 1546605 15794264 ~ 15973657 (+)
fam136a fam136a,LOC102792467 other downstream 2573276 16820935 ~ 16824328 (+)
G176882 inpp5j other downstream 2795176 17042835 ~ 17046989 (+)
xpo7 xpo7,LOC107678024,LOC107586117 other downstream 3891053 18138712 ~ 18174518 (+)
G177219 NA other downstream 3976614 18224273 ~ 18226133 (+)

Expression


Co-expression Network