LOC103043578 (LOC108411121)


Basic Information

Item Value
gene id LOC103043578
gene name LOC108411121
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 14285938 ~ 14314833 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259442.3
GGGGAGTTAGGGAGGTGTGGGTTTTGGTGGTTTTGGTGGGGTTTGGTTGTTGTTGAGGGTTTTTAGGGGTCATGGCGTGGCCGTGCATCGCCAGGGCGTGCTGCATGGCACGGTTCTGGACTCAGCTGGACAAGGCCGACATCGCTGTGCCGCTGGTTTTCGTCAAGTACTCTGAGGTGTCAGAAGAGACGCAGCAGCTGCAGAGAGACCGGGAGCGGGAGAAAGATCGGGATCGAGAAAGAAATcgtgaaagagacagagaaaaagacagacacCGGGACCGGACCCGGGACCGTCTGCAGGAGAAAAGCCAGGAACGGGATCCAGAAAGGAATCGGCAGGAAGTGACCCGTGATGGTCGTGAGAATGCTCCTGGCTCTGTCATGCGGCAGGACTTCAAGGCATGGAAGGTTCGCCCAGAGCCAAGCTGCAAGCCCAAGTGCGAATACCATGGCCCGGAGGTTCCTTTCGACAGCCAGACCCAATACCGCCAGGACTATAAGCCATGGCCTATTCCCAGGAGGGGTGACCACCCCTGGATACCAAAGCCAGCACTGGAGTGCGGCCTGGAGAAGAGCCAAACCGCTGACAAGGTGCAGGAGAAGGAGATGCTGAtgggagagaagaagaagaggcaAGTAAAGAGAgttgagaaagagaagaaggtcATCACAGGAAAAGAGGGGTCAGCAGAGGCCCCTGTTAACGTGGGGAAGGGCAGGGAGGCTGTGGACGCTCTAAATCGCCAAATAAAGCAGGAGGTCGGTGGTGGGAGCTCATACAGGAGGGAGTTTAAAGCTTACACAGACGTGAAGCCAGTGAAACTGATCCGGGCCAAGTCTCAGTACCACCCACCAGATGAGAAAACCAACCTGGAGACCAGCTATAGTGCCACCTTCAGGGGAGAGCAGGCAAAGCTACAGCCTGCCGACAACAAGGCCCTGGAGAGGAGAAGAATACGAACGCTGTACAGTGAACCATACCTAGATTCTAGCAAGGGGGAGAGATCAAGTCTTCCTCGTTCCAAACCAAAAAAGACCACTTCTTCGTCCACCTCCCAGGGCAAAACGGTGAAGAAGTCCAAGGAGAAGCAGACGGCCTCGGTTCGAGGATCCAAAAAGAAAAGCTCGGAGAACCAGCCAGAGAGACGGGCAGCGCAGGGCGACAAGGAGAAAAGTAAAGAGATGAACAACAAACTGGCTGAGGCGAAAGAGGTTGTGCTAAAACAGTACCACTACATTCAGCTCTGCCAACCCATCCGAGATATTGGTTGGGTGCAGACGCTAAAGCAACACCTGTGGCGCTGTGCACTACCTGACCCAAGAGAGTCTGAGTCTGTCCTGGGACGAATCAGTGATTATTATTCCCCGGGTACCTCTGGAAGAGAATCAGAGCCACTGGTGGAACGACCAGAACCACGCAGCAAGGCAGTAGTGCGATTCGCGCCGGACGTCAAATACTGACGCTGACCAGCAACAGAAGTGAAAGCGGACTAAAGGAGTAGATGTGGACAAATCTGAGTTACACAGTTTCCCCTCTAGAATGAAAAGTGCTGTCTTAGGAGCCACACTGGAGCAAAGAGGCTACTTCTGAAAGCCCCTGCAtcaattagcatggtgctaactgaAGACCTAAATCTTCACACACTCCTTAACTGTGTGGAGGTGTTTAGTCATTTCCAATAGACTTGCTAGATTTAATGTGGTTTCTGATTTGCTGGTGTTTACACACACGGGACACAGTTCAGACTTTAAGGTGCTGCTACTGTTTTTAGCTATGCTAACAGAAAACACTATGTGAAAAAAGTATCAGGACAACTGTTCATTCACTGTTTCTTCCTAAATCAaggttattaaaataatttgtcCGTTAATCCTGTTTTGGTTGGAGTAACTCTCTACTGTCCATGGAATGCTATCTATTAGATTttgcagcattgctgtgaggatttgattgcattcagcactAAGAGCCTTAGTGAGATCAGGATGTTGGGTAATTATCACCCTACCTCATTCCCAAATTATCCCAAAACTTTATACCCCCCTCTGGCCCACACCTTGCAGTAAGAATATTGCCAGTAAATTCATATGTATCTGCTTAAGAGATTCAAATACTATTGGCCATACTTgtttacagggactagacaacttgtgtgtgtgtgtgtgtatttgtacatctgtgtcagcaacgtCTGCAACCTACAGTAGCTGAATGTATTGCTTACAAACACTGCACACTTGGatattgaatgtattttagCCAACAACAGTGTTTCGTAAAACCTATGTAAAGAGTCTGTGGAGATTACTAAATGCCTCCACTCAGTTCGAGGAGAGTATGAGAGGATTTAGACCTTTAGgcagttagcaccatgctaacgTATATatgagttagctacattagcctcttaGCTCCAGTGCTAGAACTAGCAAACATTAGAGTTGGGGGAATTTTTGCACACTGGATTTTGGTTTGAAGAAaaagtactgtatgtatatatgtagtatATTCTAATTATAAAAATCACTTGATAGCTTCCCTATGAGAGATTCTTTGAGCACAGACTGTTTTGCTAAAGTTCTAAATGGTGCTACAAAACACTCATTTCTGTTCTATATTACTGCGCCAGATATACTGTCAGATTTGGAGACACCATACAAACCATGAAGTGCTTCCTTAAAGTTCATCCTTACTGTActtaatttaaatgcaaataaatatgaTGATAGTAGCAAGTTA
>XM_022681106.1
GGGAGTTAGGGAGGTGTGGGTTTTGGTGGTTTTGGTGGGGTTTGGTTGTTGTTGAGGGTTTTTAGGGGTCATGGCGTGGCCGTGCATCGCCAGGGCGTGCTGCATGGCACGGTTCTGGACTCAGCTGGACAAGGCCGACATCGCTGTGCCGCTGGTTTTCGTCAAGTACTCTGAGGTGTCAGAAGAGACGCAGCAGCTGCAGAGAGACCGGGAGCGGGAGAAAGATCGGGATCGAGAAAGAAATcgtgaaagagacagagaaaaagacagacacCGGGACCGGACCCGGGACCGTCTGCAGGAGAAAAGCCAGGAACGGGATCCAGAAAGGAATCGGCAGGAAGTGACCCGTGATGGTCGTGAGAATGCTCCTGGCTCTGTCATGCGGCAGGACTTCAAGGCATGGAAGGTTCGCCCAGAGCCAAGCTGCAAGCCCAAGTGCGAATACCATGGCCCGGAGGTTCCTTTCGACAGCCAGACCCAATACCGCCAGGACTATAAGCCATGGCCTATTCCCAGGAGGGGTGACCACCCCTGGATACCAAAGCCAGCACTGGAGTGCGGCCTGGAGAAGAGCCAAACCGCTGACAAGGTGCAGGAGAAGGAGATGCTGAtgggagagaagaagaagaggcaAGTAAAGAGAgttgagaaagagaagaaggtcATCACAGGAAAAGAGGGGTCAGCAGAGGCCCCTGTTAACGTGGGGAAGGGCAGGGAGGCTGTGGACGCTCTAAATCGCCAAATAAAGCAGGAGGTCGGTGGTGGGAGCTCATACAGGAGGGAGTTTAAAGCTTACACAGACGTGAAGCCAGTGAAACTGATCCGGGCCAAGTCTCAGTACCACCCACCAGATGAGAAAACCAACCTGGAGACCAGCTATAGTGCCACCTTCAGGGGAGAGCAGGCAAAGCTACAGCCTGCCGACAACAAGGCCCTGGAGAGGAGAAGAATACGAACGCTGTACAGTGAACCATACCTAGATTCTAGCAAGGGGGAGAGATCAAGTCTTCCTCGTTCCAAACCAAAAAAGACCACTTCTTCGTCCACCTCCCAGGGCAAAACGGTGAAGAAGTCCAAGGAGAAGCAGACGGCCTCGGTTCGAGGATCCAAAAAGAAAAGCTCGGAGAACCAGCCAGAGAGACGGGCAGCGCAGGGCGACAAGGAGAAAAGTAAAGAGATGAACAACAAACTGGCTGAGGCGAAAGAAGAGTCTGAGTCTGTCCTGGGACGAATCAGTGATTATTATTCCCCGGGTACCTCTGGAAGAGAATCAGAGCCACTGGTGGAACGACCAGAACCACGCAGCAAGGCAGTAGTGCGATTCGCGCCGGACGTCAAATACTGACGCTGACCAGCAACAGAAGTGAAAGCGGACTAAAGGAGTAGATGTGGACAAATCTGAGTTACACAGTTTCCCCTCTAGAATGAAAAGTGCTGTCTTAGGAGCCACACTGGAGCAAAGAGGCTACTTCTGAAAGCCCCTGCAtcaattagcatggtgctaactgaAGACCTAAATCTTCACACACTCCTTAACTGTGTGGAGGTGTTTAGTCATTTCCAATAGACTTGCTAGATTTAATGTGGTTTCTGATTTGCTGGTGTTTACACACACGGGACACAGTTCAGACTTTAAGGTGCTGCTACTGTTTTTAGCTATGCTAACAGAAAACACTATGTGAAAAAAGTATCAGGACAACTGTTCATTCACTGTTTCTTCCTAAATCAaggttattaaaataatttgtcCGTTAATCCTGTTTTGGTTGGAGTAACTCTCTACTGTCCATGGAATGCTATCTATTAGATTttgcagcattgctgtgaggatttgattgcattcagcactAAGAGCCTTAGTGAGATCAGGATGTTGGGTAATTATCACCCTACCTCATTCCCAAATTATCCCAAAACTTTATACCCCCCTCTGGCCCACACCTTGCAGTAAGAATATTGCCAGTAAATTCATATGTATCTGCTTAAGAGATTCAAATACTATTGGCCATACTTgtttacagggactagacaacttgtgtgtgtgtgtgtgtatttgtacatctgtgtcagcaacgtCTGCAACCTACAGTAGCTGAATGTATTGCTTACAAACACTGCACACTTGGatattgaatgtattttagCCAACAACAGTGTTTCGTAAAACCTATGTAAAGAGTCTGTGGAGATTACTAAATGCCTCCACTCAGTTCGAGGAGAGTATGAGAGGATTTAGACCTTTAGgcagttagcaccatgctaacgTATATatgagttagctacattagcctcttaGCTCCAGTGCTAGAACTAGCAAACATTAGAGTTGGGGGAATTTTTGCACACTGGATTTTGGTTTGAAGAAaaagtactgtatgtatatatgtagtatATTCTAATTATAAAAATCACTTGATAGCTTCCCTATGAGAGATTCTTTGAGCACAGACTGTTTTGCTAAAGTTCTAAATGGTGCTACAAAACACTCATTTCTGTTCTATATTACTGCGCCAGATATACTGTCAGATTTGGAGACACCATACAAACCATGAAGTGCTTCCTTAAAGTTCATCCTTACTGTActtaatttaaatgcaaataaatatgaTGATAGTAGCAAGTTA

Function

NR:

description
PREDICTED: microtubule-associated protein 6 homolog isoform X1

GO:

id name namespace
GO:0005515 protein binding molecular_function

KEGG:

id description
K10432 MAP6; microtubule-associated protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259442.3 True 2742 mRNA 0.47 5 14285938 14314833
XM_022681106.1 False 2630 mRNA 0.47 4 14285938 14314832

Neighbor

gene id symbol gene type direction distance location
zbtb21 zbtb21 coding downstream 28718 14248668 ~ 14257220 (-)
rad51c rad51c coding downstream 41838 14229557 ~ 14244100 (-)
ppm1e ppm1e,LOC102780278 coding downstream 63627 14142174 ~ 14222311 (-)
LOC103039046 myl10,LOC108413922,LOC107734439,LOC108276823,LOC107577538,LOC107728843,LOC107588876 coding downstream 347664 13935026 ~ 13938274 (-)
mdh2 mdh2,LOC107588934,LOC107691667 coding downstream 521755 13756244 ~ 13764183 (-)
LOC103045094 NA coding upstream 377847 14692680 ~ 14714840 (-)
LOC103045405 LOC103045405,LOC108442105 coding upstream 400678 14715511 ~ 14720986 (-)
LOC103045698 NA coding upstream 416768 14731601 ~ 14736873 (-)
LOC103046216 lhfp,LOC103046216,LOC108442104,LOC107691645,LOC107577306,LOC107751385,LOC107746987,LOC107589696,LOC107686123 coding upstream 428483 14743316 ~ 14795102 (-)
LOC103046520 LOC108442103 coding upstream 546874 14861707 ~ 14902599 (-)
G176179 NA non-coding downstream 11576 14273468 ~ 14274362 (-)
G176154 NA non-coding downstream 179860 14101882 ~ 14106078 (-)
G176134 rabgef1,LOC107734461 non-coding downstream 187260 14096250 ~ 14098678 (-)
G176139 rabgef1,LOC107734461,LOC107728875,LOC107577469 non-coding downstream 195823 14087099 ~ 14090115 (-)
G176150 kctd7,LOC106603469,LOC108415927 non-coding downstream 205851 14076346 ~ 14080087 (-)
G176184 NA non-coding upstream 3888 14318721 ~ 14352127 (-)
G176203 NA non-coding upstream 257177 14572010 ~ 14572473 (-)
G176248 NA non-coding upstream 413505 14728338 ~ 14728932 (-)
G176277 NA non-coding upstream 524673 14839506 ~ 14844568 (-)
G176308 NA non-coding upstream 640470 14955303 ~ 14955563 (-)
G176138 NA other downstream 213254 14069749 ~ 14072684 (-)
G176136 LOC108415819 other downstream 219794 14063500 ~ 14066144 (-)
G176146 LOC108415819 other downstream 233977 14051562 ~ 14051961 (-)
tex14 NA other downstream 471428 13774803 ~ 13814510 (-)
LOC111195111 NA other downstream 537288 13746636 ~ 13748650 (-)
LOC103044788 wnt11,wnt11r,LOC107686210,LOC107589704,LOC107747044 other upstream 342437 14657270 ~ 14670670 (-)
LOC111194989 NA other upstream 1213463 15528296 ~ 15565463 (-)
stoml2 stoml2,LOC107686459,LOC107688641,LOC107569390,LOC106563216 other upstream 1465722 15780555 ~ 15790644 (-)
G177526 NA other upstream 3857016 18171849 ~ 18174525 (-)
G177568 NA other upstream 4082749 18397582 ~ 18403008 (-)

Expression


Co-expression Network