LOC103022731 (cntfr,LOC107554853,LOC107756542,LOC107738850,LOC107554231)


Basic Information

Item Value
gene id LOC103022731
gene name cntfr,LOC107554853,LOC107756542,LOC107738850,LOC107554231
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 20842037 ~ 21177458 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260812.3
CAGACAGAGCAGCGCGAGCCGCTTCTGAGCACACACACTCCTGaccacgcgcacacacacacacataaatattcGTACACACACGCACGCCCGCAGGCGCGCACACACGCACGGGTGTCGATACGCACAGGACGCACAACTTTCTGCGCTGGAGCTTCTCTGACACGCGCGcgtgcacagagagagagagagagagagagagagagagagatacacaccTCGCTTTTGCAGGAGacgggacacacacacacttacgcgCTCACTGTggaagagcgagagaggagTCAGAGGAGCGCGGGCGCGAGAGGGGGAGAGAGCATCTAAGCTGTGCTATAACCTCAGTGAAGGCggtctgagacacttggtctGGAGGAAGAAGACGTTTCTGCAGGATTAGTAGatgGCCAACATTGTGACGTCGGTGTGCTGTGTGGTGCTCgccgtggtggtggtggtgtatgccCAGAGACGCAGCCAGCAAGGGGCCAGGATCCAGTATGCTCGGATCGGCAGCGACGTGACCATGCAGTGCGGCTCTCTGGACAACGACGCCTCGGTCATGTGGAAGGTGAACGGCACGGACGTGAAGGCTCGGCGGCGGGAGGAAGGGCCGCGGCTCACCCTCATCGAGGTGGACATGACCAGCAACGGCCTCTACAGCTGCTTCCAGAACCCTGACGACTTCCAGCGCCGTGACCAGATCACACTTcgggttggagTACCTCCGAGGGAACCGCAGGTGACATGCCGATCCAACACGTACCCCAAGGGCTTCTACTGCAGTTGGCACCTTGCGCATGCCACCTACATCCCAACAGAGTTCGAAGTCGACGTCCGACACAACCAGAAGCCTCTGGAAGTGAAGCGAGATGAGGTCCATAAGAACCGCTGCCACGTGAAGTTTCCAGAACTGTTCTCCAGTTTTCCCTACCGAGTCAACGTAACAGCAATCAACGCACTGGGCAGTGCATCTGCAGACCACAGCTTTGAGGAGTCCTCCATGGTGAAACCAGACCCTCCAGAGAAGGTAGTGGCCACGCCCATCCCCAACAACGTCCGGCGGCTGGTGGTGACCTGGAACAGCCCCTCCACATGGCCGGACATCGACTCCTTCCCCCTCAAGTACTTTCTGCGCTACAGGCCGCTCATCAAAGACCAGTGGCAACATGTGGAGCTTTCGGACAGCACCTCCCACACCATAACAGACGCTTATGTGGGGAAGGAGTACATCATCCAGCTGGCTGCCAAGGACATGGAGATCGGTACATGGAGCGACTGGAGCGTGGCCGTGCATGCTACCCCCTGGACAGAGGAGCCCAAGCCCATCACCTCCACCACTGAAGCAGACGTGCTAATAGAGACCACCCCCTCCTCTGCCCCGCCCTCATTCAAGCCAAGGGTTGGCAACCCCACAGGTGGATGCTCCACCCTTATCTGCTCATACCATATCCTCCTGGTGTGCACCCTGATGTCCATCATGTGATGTTTATGATTCATTCCTGTGGAAAAGTCTTCTAGTTCTATTTGCACATGTTAATGGATATCGTGCATTGATAATTTAATTCAAGTTTTTTTCTCACgacaagaaaaaaataggaacgattaataaataaatgatgccgTTTTGCGGAGGAAGgaacgtttttaaaaaagacaaaataaatatgagaagaagaaggagaagaagaagaacagcaAGAAACGAATGATAGAGCTTCAAAACATCATCTCGGGCAGCGTGGATGAAGGTGAAGGTGGAGGTGGAGTTATTAGCGCAGGCACGGGAGAGCGGCGTACCCCGGGGAAGGAAAAGATATGGAAATGAATTAATAGACTCCAAATAAAGCATCTGTTTCACAGCAAAGCAGCACAACACCcagaaccaaccaaccaaccaatgatccacccatccatccattctccCCTATTTCCATTggaaattaaattttacatttttgatttttcctctttttgaagcaaataaatcagattttttcccctttttccttattttggGGTATTTTCTGGAATCTTTCACACAACCATCAAATACAAGTACATGTACCAACACACTGGAGATGCTCAAACAAGTCAAGCAAGTGTGTACTATCAATATATCATCAATTTCAGCAACATACAGCTAACTCATCATGCCAAAGACTCTTGGAgaactctcttttttcctccccCCCCCTCATCCCTCGCTTCCCCCTCGGTCTGTTGTTATGCTGTATGCGCCCGGCGTCTGGACAGCCGCAGTGCAGAGATCTCCATCCACGGACCTCCAAACAGGAGCTTCATAGACTGAGGACTTCATAACTAACGTAGAATGAAGGTCATCGTTCTTCAGATTATACGATTCGATACGATTCAATTCGATTATGAGCTTTTGCTTTGTTCTTCCACATTTACAGTacctttctttcactttttaagATTGTTTTATTCTCCTGTTTGACCCGTGACATCGAACAGACCTTCAAAAGACGttaacaaacaaaccaaccaaccaatcaacacacacacacaaatacacacaaacacacacatacacacactttcccTCGCACAcatgaacaaaaatgtaatgtactgGACTGCCTTTTTACatggaaaaagtaaaagaaaaaaaggagtgGAGTAAAGTGGAGATAATGAATTGTATTAGAtcatttctcttgtttttttctctctttcttacacatACGTTGTTCTAAGTTGTTCTAAGTTGTTCTAAGTGGCATAGAAcctcttttctctcactcttaccCAAATCAAAAAAAGTTTTCTGCTTTATGTTCTTGGTTTATGTTcgattataaatgtaatatccGACGCcgcatttttgttttctttactcaAGAATTATTTTGTtgtgatttaatgttttttgttcttttttttgtttgtttaatattaaacaatatcCATATAGCATCTTTAGTTTCTTTTCTCAAACATTCACATTTGCTTAATTGCGTAATTCTCCACGATCATATTTTGTAAACTACGATATGTATCTTTaacatggacaaaaaaaaatactttattatttaataatgtatgTATTAGCTTTAGATTCTTGTAACCTGTATCTGGGTTCTTTTTATAGATGTATATAAAAAACGAGAGGTTGTTCATTAAATGTGACCATTTCACAATGA

Function

symbol description
cntfr Predicted to enable cytokine binding activity and cytokine receptor activity. Acts upstream of or within positive regulation of axon regeneration. Predicted to be located in membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane. Is expressed in several structures, including central nervous system; cranial ganglion; hindbrain neural plate; immature eye; and pectoral fin musculature. Orthologous to human CNTFR (ciliary neurotrophic factor receptor).

NR:

description
PREDICTED: ciliary neurotrophic factor receptor subunit alpha

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0004896 cytokine receptor activity molecular_function

KEGG:

id description
K05059 CNTFR; ciliary neurotrophic factor receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260812.3 True 3164 mRNA 0.46 10 20842037 21177458

Neighbor

gene id symbol gene type direction distance location
galt galt,LOC107653127,LOC107667272 coding upstream 263252 20428762 ~ 20578785 (+)
hdhd2 hdhd2,LOC107738843,LOC107743237 coding upstream 434469 20403494 ~ 20407568 (+)
skor2 skor2,LOC107743073,LOC107653123,LOC107738854,LOC107558682 coding upstream 446881 20381689 ~ 20395156 (+)
smad2 smad2,LOC107743055,LOC107653131 coding upstream 584292 20229527 ~ 20257745 (+)
LOC103027562 NA coding upstream 686722 20152461 ~ 20155315 (+)
LOC103023250 NA coding downstream 25804 21203262 ~ 21258587 (+)
cst8 NA coding downstream 107788 21285246 ~ 21295849 (+)
musk musk coding downstream 148754 21326212 ~ 21369274 (+)
grin3a grin3a,LOC107750958,LOC107710005,LOC107702562,LOC107554227,LOC104941214 coding downstream 754873 21932331 ~ 21964708 (+)
LOC103047607 LOC103047607 coding downstream 1145262 22322720 ~ 22334543 (+)
G178097 NA non-coding upstream 120646 20721073 ~ 20721391 (+)
G178091 NA non-coding upstream 217009 20624779 ~ 20625028 (+)
G178088 NA non-coding upstream 239248 20602451 ~ 20602789 (+)
G178055 sigmar1,LOC107573076,LOC107653128 non-coding upstream 417323 20421369 ~ 20424714 (+)
G178035 NA non-coding upstream 510034 20331234 ~ 20332003 (+)
G178105 NA non-coding downstream 59681 21237139 ~ 21264984 (+)
G178202 NA non-coding downstream 363119 21540577 ~ 21546968 (+)
G178233 NA non-coding downstream 521975 21699433 ~ 21699633 (+)
G178254 NA non-coding downstream 795256 21972714 ~ 21973034 (+)
G178278 NA non-coding downstream 921861 22099319 ~ 22099558 (+)
ier3ip1 ier3ip1,LOC106633120 other upstream 442872 20396377 ~ 20399165 (+)
G177950 NA other upstream 702473 20138822 ~ 20139564 (+)
LOC103043854 NA other upstream 745326 20089238 ~ 20096711 (+)
LOC103042206 LOC108428882 other upstream 1066246 19750942 ~ 19775791 (+)
LOC111194983 NA other upstream 1119477 19720301 ~ 19722560 (+)
LOC103046694 LOC108440723,LOC108277161 other downstream 949663 22127121 ~ 22315307 (+)
LOC103025565 scd5 other downstream 1278861 22456319 ~ 22465729 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other downstream 1309365 22486823 ~ 22491503 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other downstream 1315982 22493440 ~ 22502159 (+)
G178352 NA other downstream 1367182 22544640 ~ 22546130 (+)

Expression


Co-expression Network