LOC103023250



Basic Information


Item Value
gene id LOC103023250
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 21203262 ~ 21258587 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_007260815.3
AAGCCCGAACTGTTACTACGACGCGCTAAAGTTTGCCAGCTAAAGCGATGGAGGGGAATCAAGTGAAAATGCCTGTATAACACTGGAACAGAAATAAGATGCCTGGTCTAGTGTCATGCCCTGGTGGTCTAATAGTCATTGGGatcctctctctgtgtgttgttCACATCAGCTCAGAGATATGGAGCAATGAAGtttcagaCGTCCAGTACGGAAGCTTGGGCTCCAGCGTCACGCTGACCTGTGGAGGTGCTCAACACGGGTCTCCGGTGCACTGGCGGCATAATGGGAGCACAGTCCGGTTCAGGCATACACACACCTCCAACGGCACCCTCATACTGCACAATACCACACGATCGATGGAGGGCAACTACAGCTGCCACAACCAGAGAGGGGTCCTCCTGCAGACCATCAGACTCCGCCTAGGCCACTCTCCCGGTTATCTCAATGTTTCCTGCCGAGTGCCAAGTCACTTTATAATCCACTGCTTTTGGACGCAGAGGGTGACGACTCACCTGCCCACCAACTACATCACCACTTACAGTGTGAATGATGAAAGGGCACAGCACTGTAAGCAGACGTCTATGGATGTCAACGAGTGCACCATCAACAATCATGAGTTCTGGAAGCCCAAGTGCCTGGTGAACATCACAGAAGTCAATCCGCTGGGCTCCAATTCCACCATCATCTATGTGGATGTCCAAAAATCGATGAAGCCCCACGCTCCCGAAGCAGTGACTGCTTTGGAAGTGCCGGGTGAATCCACTCGACTGCTGGTGCAGTGGAATTTCCCACAGTCCTGGCCTGTTATGGCTGGTTTACCTCTGAAGTTCGAGCTGCAGTACAAGCCAGTGGGGTCTAACTACTGGTCCAAGCTGGAGACGGAGGACACCAGTGCGCAGATCATGGACGCTCTGGAAAGCCACCTGCACCACATCCGAGTCCGAGCGCAGGATGCTTTAATTAACTACAGCCAGTGGAGCGAGTGGAGTCAGGTGGTGCAGGCCCAACCCTGGAGCGACCCTCTAGTCACTGCTGAAGTGACCACAGACGAACCTTTTGATTTCCCAATCTTCCCGTCTACGTTTCCAGTGAGGGCAACAGAAAAGTCTCCAGACCTGCCACCGAGTGAAAACGGAAGTCTGGGATTGCTTATCACTCTCGGCCTGTTCGTTGCAGTAATGGTGGCTGTGGTGTCCTCTGTCACGACCCTTCTATGGATAAGAAACAGGAGGCGAGATAATGTGACGAAACAGGAACTGACCTCCATGGTAAAGATGAAGTCCTTGCCAGTGTAAAGTTTTCAGGTCGGCTCTCTCCTCTTTCAGCCCTCATAGGGCTTCATCCTAGGGAATCATCACCACTGCCACTGCAGCAGCGAAACAGCGAACAACCAGCAACACCTACGATTCCAGCGTTCTCTCCGTCGCTGCTTCGGGGGATCGGCTCCTTTCAGCGGAGTTCTGAGTCCCATAAACTGTGAACCCTTCCAACCCTGTAACTCTGCAATGTAGCACAACTCAACAAGAGTTAGCAGAACTCCAGAGAGTtactggctctctctctctttgacacGCAAAGCAGGACGGCCGGCCTTGGAGCATGAAAACCAGCACATTTTAACCCGTACATGTTTTCAATTTTCTGCCGCTTCAGCTTTTCCATGCGGACTTGTGCCAGTTTGGCTGTGTGTTGACATTTGGAATGCTGTGAAGAAGAAAGAGGAAGGGAGCGTTGCGCCAGTTATGCCAGTAAGAGGGCCGTGTATTGGGCATTATGGATAAAGTTGGCATTCTTTACGTTTCGTTTTAACGCTGGGGAAGGGACCCGGTGAACAGCGGAGATacattactttaacttttactctCCCCGACCTGAACGTAGCTGCTAAACGCGGacgagaaaaaaatgaatggatCTGGAGGTTTCACCGATGGAAGCTGAGCATTTTCAGGACTTTTTTTATCGTTTGGACTTGGACTTTTCTTCCGTTACATTTTTGATTGaccttttaaatgccttttaaaaagcctTGACCAGGTGGACACATCTGCAAACCATCTATTCATCAGGCTTGTTTTCAACCATAAGTTGCCTTTTAAACTTAATGACATCAGCCGTAATGTCCCTCAAGAATTCAGCGCTcgttttttagtgtgtgtggcCAAACCAGCAGTAATTACCCTGTAGGCCTTCACGACAGTAAGTTGGCAttcaacaaaccaaaaaaaaaaaaaaaaaaagctgagagAGCGAGGCAATTGGTGCTCTGTAAGAATGCAGTTGGTCATAGTGTTCTTTTGCCGTAAGAAACGAAAGTGTCCTAAAAAAACCAGGCATTCACAGAGCGTCGCAACGGAAAGTGAATGTAATTGCTTGGTCTTACATTAGCAAGGCATGTAAGACGGAGTTAAGAAGCCCCACTCAGGATTTACCGCAGCTATTACAGGACTAGCACTGTGTTTAGTAATAGAGAGCATGGTAAGCATAGGCTTATAGTGAGTCAACAGACCTTACTGTACCTTTTAATAGATCGAAAGATCACTGTattattcatattcatagaTGTTTCATTGTCAGGGTTGTTGATTGATTTTCTCATGGGCAGAGTCGCATGATTGCTGCTGATCAGGTGGTGTTTGAGCGGGGACTGATTTGCATTGAGtatgcaaattaaaaaacaacttttcttttttttacgaACAttgcacaacacaacacaacggaattcaACCTCCGCTTTTACCTTAAGGCAGTATTGTGGAGGGTGAGCTACCTTGTTTAAGAGCACCTCAACCACAAAATGTTAACTGAAGGAAAAAGTTCAGTTTCTTCACTGATAATGGTTGTGGGAATTAAACCAGCAAGCTTTTGGTTCCAAGGAAAGCCAGAGAGAACAGACCTCCAGAGCATTGAATCCTTTAGAAAGGCCAGGAATGTGCATTCTAAACAGTGTAACCATCACAATTATTAGTTGTACAGCTGAAAGTTGTGCTTTAGCTGAAATTAATGCACATAAAAGGGTAAAAAGGCTTCATTCATACAGTATTAGGCCACaattagtttgaactcaaatcaattgagtttagtctgttgccagatattatgttttatatttaactgcctggcctctgtgttgtaggtTATAAGAGCAAGcttcattttctgagctgcagtaactctgttagCTGTGTCGGCTGTGTGCTCTATACAGTTCACtctacagatctggaaaaaaaa

Function


GO: NA

KEGG:

id description
K05056 IL11RA; interleukin 11 receptor alpha

RNA


RNA id representative length rna type GC content exon number start site end site
XM_007260815.3 True 3240 mRNA 0.47 12 21203262 21258587

Neighbor


gene id symbol gene type direction distance location
LOC103022731 cntfr,LOC107554853,LOC107756542,LOC107738850,LOC107554231 coding upstream 25804 20842037 ~ 21177458 (+)
galt galt,LOC107653127,LOC107667272 coding upstream 624477 20428762 ~ 20578785 (+)
hdhd2 hdhd2,LOC107738843,LOC107743237 coding upstream 795694 20403494 ~ 20407568 (+)
skor2 skor2,LOC107743073,LOC107653123,LOC107738854,LOC107558682 coding upstream 808106 20381689 ~ 20395156 (+)
smad2 smad2,LOC107743055,LOC107653131 coding upstream 945517 20229527 ~ 20257745 (+)
cst8 NA coding downstream 26659 21285246 ~ 21295849 (+)
musk musk coding downstream 67625 21326212 ~ 21369274 (+)
grin3a grin3a,LOC107750958,LOC107710005,LOC107702562,LOC107554227,LOC104941214 coding downstream 673744 21932331 ~ 21964708 (+)
LOC103047607 LOC103047607 coding downstream 1064133 22322720 ~ 22334543 (+)
sec31a sec31a coding downstream 1162775 22421362 ~ 22453611 (+)
G178108 NA non-coding upstream 244779 20931781 ~ 20958483 (+)
G178097 NA non-coding upstream 481871 20721073 ~ 20721391 (+)
G178091 NA non-coding upstream 578234 20624779 ~ 20625028 (+)
G178088 NA non-coding upstream 600473 20602451 ~ 20602789 (+)
G178055 sigmar1,LOC107573076,LOC107653128 non-coding upstream 778548 20421369 ~ 20424714 (+)
G178202 NA non-coding downstream 281990 21540577 ~ 21546968 (+)
G178233 NA non-coding downstream 440846 21699433 ~ 21699633 (+)
G178254 NA non-coding downstream 714127 21972714 ~ 21973034 (+)
G178278 NA non-coding downstream 840732 22099319 ~ 22099558 (+)
G178280 NA non-coding downstream 841453 22100040 ~ 22101283 (+)
ier3ip1 ier3ip1,LOC106633120 other upstream 804097 20396377 ~ 20399165 (+)
G177950 NA other upstream 1063698 20138822 ~ 20139564 (+)
LOC103043854 NA other upstream 1106551 20089238 ~ 20096711 (+)
LOC103042206 LOC108428882 other upstream 1427471 19750942 ~ 19775791 (+)
LOC111194983 NA other upstream 1480702 19720301 ~ 19722560 (+)
LOC103046694 LOC108440723,LOC108277161 other downstream 868534 22127121 ~ 22315307 (+)
LOC103025565 scd5 other downstream 1197732 22456319 ~ 22465729 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other downstream 1228236 22486823 ~ 22491503 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other downstream 1234853 22493440 ~ 22502159 (+)
G178352 NA other downstream 1286053 22544640 ~ 22546130 (+)

Expression



Co-expression Network