galt (galt,LOC107653127,LOC107667272)


Basic Information

Item Value
gene id galt
gene name galt,LOC107653127,LOC107667272
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 20428762 ~ 20578785 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260816.1
AGCTCTGACTCTAAACAGAAACTTAACACAGCCAGTCAGCAGCTGAAGACGCTGCAGCtcctgtgttatttatttatggtgtTTTCTAAACACACTTTGGGGGAATAGTCAGGGCTGGAATTCTCTTAATTCTTGCTGTAGAGGAGGCTGATGCATGACTGAAGCATGGAGACTTACAGCACAGTCCAGTTCGACCCCaaagAGCACCAGCATCTGCGCTATAACCCCCTGCGGGACTCCTGGGTGCTGGTTTCAGCTCATCGAATGAAGCGTCCCTGGAAAGGACAAGTGGAGAAGCCGCCTGAGGACAACGTCCCACGCCACGACCCCAACAACCCTCTCTGCCCCGGGAGCACCAGAGCCAACGGCGAGGTCAATCCAGAGTATGACAGCACTTTCCTCTTTGAGAACGATTTCCCAGCGCTGCAGCCAGATGCTCCAGACCCTGgttCAGATCATCACCCACTGTTCCAGTCTAAAGCTGCTAGAGGAGTTTGTAAGGTCATGTGCTTCCACCCCTGGTCTGACATCACTTTACCCCTGATGCAACCAGAGGAGATCCGCAAGGTGATTGACAAGTGGGCGGAGCTCATTGAGGAACTGGGCCCCACTTATCCATGGGTGCAGatCTTTGAGAATAAAGGAGCCATGATGGGCTGCTCCAACCCTCATCCTCACTGTCAGGTTTGGGCCAGCAGCTTCCTGCCTAATGAACCGGCCCTGGCTGAGCGCTGTCAGAGGGAGTATTTACAGAAACACGGAGAGCCCATGTTGCTCCAGTACGCTCGCATGGAGGCTCAGGCACAGgaGCGTCTGGTGTTGGAGAACGAGCATTGGCTGGTAGTGGTGCCTTATTGGGCAACGTGGCCTTTTCAGACCCTGCTGTTGCCACGAAGACACGTTCTGCGTCTCCCTGACCTCACATCCcaggagagagacaGTCTGGCATCCATAATGAAACGGCTCCTGACGAAATACGACAACCTTTTTGAGGTCTCCTTCCCGTATTCAATGGGCTGGCATGGAGCCCCGACAGGAAGCCACCTGAAAGAAGACATGAGCCACTGGCAGCTCCATGCCCACTACTACCCGCCCCTCCTCCGCTCGGCCAGCGTCCGCAAGTTCATGGTGGGGTACGAGATGCTGGCGCAGGAGCAGCGGGACCTCACACCTGAGCAGGCTGCTGAGAGATTACGGGGGCTCTCTGAGGAGCACTACAAGATCACAGCCAAGGAGGGACAAGCGGGTTTGTAAACGGAGTGAACTGAGCAGAAGAGAGGACGGACTGGAGGACGCGCTGCAGAAGATGAACAGCTGAAGAAACTTGTTAATAAAGTGTTAGACTTCATAA

Function

symbol description
galt Enables UDP-glucose:hexose-1-phosphate uridylyltransferase activity. Acts upstream of or within galactose catabolic process via UDP-galactose. Predicted to be active in cytoplasm. Used to study galactosemia. Human ortholog(s) of this gene implicated in classic galactosemia. Orthologous to human GALT (galactose-1-phosphate uridylyltransferase).

NR:

description
galactose-1-phosphate uridylyltransferase

GO: NA

KEGG:

id description
K00965 galT, GALT; UDPglucose--hexose-1-phosphate uridylyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260816.1 True 1351 mRNA 0.54 11 20428762 20578785

Neighbor

gene id symbol gene type direction distance location
hdhd2 hdhd2,LOC107738843,LOC107743237 coding upstream 21194 20403494 ~ 20407568 (+)
skor2 skor2,LOC107743073,LOC107653123,LOC107738854,LOC107558682 coding upstream 33606 20381689 ~ 20395156 (+)
smad2 smad2,LOC107743055,LOC107653131 coding upstream 171017 20229527 ~ 20257745 (+)
LOC103027562 NA coding upstream 273447 20152461 ~ 20155315 (+)
LOC103030097 NA coding upstream 278644 20149258 ~ 20150118 (+)
LOC103022731 cntfr,LOC107554853,LOC107756542,LOC107738850,LOC107554231 coding downstream 263252 20842037 ~ 21177458 (+)
LOC103023250 NA coding downstream 624477 21203262 ~ 21258587 (+)
cst8 NA coding downstream 706461 21285246 ~ 21295849 (+)
musk musk coding downstream 747427 21326212 ~ 21369274 (+)
grin3a grin3a,LOC107750958,LOC107710005,LOC107702562,LOC107554227,LOC104941214 coding downstream 1353546 21932331 ~ 21964708 (+)
G178055 sigmar1,LOC107573076,LOC107653128 non-coding upstream 4048 20421369 ~ 20424714 (+)
G178035 NA non-coding upstream 96759 20331234 ~ 20332003 (+)
G178029 NA non-coding upstream 141183 20287072 ~ 20287579 (+)
G178026 NA non-coding upstream 165988 20261886 ~ 20262774 (+)
G177984 NA non-coding upstream 187843 20236217 ~ 20240919 (+)
G178088 NA non-coding downstream 23666 20602451 ~ 20602789 (+)
G178091 NA non-coding downstream 45994 20624779 ~ 20625028 (+)
G178097 NA non-coding downstream 142288 20721073 ~ 20721391 (+)
G178108 NA non-coding downstream 352996 20931781 ~ 20958483 (+)
G178105 NA non-coding downstream 658354 21237139 ~ 21264984 (+)
ier3ip1 ier3ip1,LOC106633120 other upstream 29597 20396377 ~ 20399165 (+)
G177950 NA other upstream 289198 20138822 ~ 20139564 (+)
LOC103043854 NA other upstream 332051 20089238 ~ 20096711 (+)
LOC103042206 LOC108428882 other upstream 652971 19750942 ~ 19775791 (+)
LOC111194983 NA other upstream 706202 19720301 ~ 19722560 (+)
LOC103046694 LOC108440723,LOC108277161 other downstream 1548336 22127121 ~ 22315307 (+)
LOC103025565 scd5 other downstream 1877534 22456319 ~ 22465729 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other downstream 1908038 22486823 ~ 22491503 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other downstream 1914655 22493440 ~ 22502159 (+)
G178352 NA other downstream 1965855 22544640 ~ 22546130 (+)

Expression


Co-expression Network