hdhd2 (hdhd2,LOC107738843,LOC107743237)


Basic Information

Item Value
gene id hdhd2
gene name hdhd2,LOC107738843,LOC107743237
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 20403494 ~ 20407568 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260818.3
GGTTTGGCAGGGAGCAGTGGTTTGGAGTCAGGCATGTTAGAGGACTGCTGTGTGAGTGTAGGACCCTAAAAGAGAAGCCTGTATATCTACAGGAGAAGACTGGTCATGGCATCTCGGCGGGCTCTGAAAGCGGTGCTCATTGACCTAAGTGGAACCCTTCATATTgaggatgctgcggtacctggAGCTCAGGAAGCACTTGCAAGGTTGCGGCAGGCTTCAGTGGCTGTGAAATTTGTAACCAACACAACAAAGGAGTGTAAGAGAACCCTGCATGAGAGACTGCTCCGGCTGAAATTTGACATAGAAGAGCAGGAGATCTTTACCTCACTGACTGCAGCTCGCAACCTGTTAGTGCAGAAGGCGGTGCGCCCTCTGTTGCTGGTAGAGGATAGTGCATTAGAAGACTTTGCAGGTATAGAAACTTCAGATCCTAATGCTGTTGTGATAGGCTTAGCACCAGACCACTTCAACTATCAAATGCTTAATAAAGCTTTTAGATTAATTTTAGATGGTGCTCCACTCATTGCGATTCATAAAGCCCGCTTCTACAAGAGAAAAGATGGACTGGCACTGGGGCCTGGGCCATTTGTGACCGGACTTGAATATGCTACTGACACACAGGCTGCTGTGGTGGGCAAACCTGAGAAAACCTTCTTCCTGGAAGCCCTTCGAGACCTCAACTGCAGCCCAGAGGAGGCAGTGATGATTGGAGATGATGCTAGGGATGATGTTGGTGGTGCTCAGAACACAGGGATGCTGGGAATATTAGTCAAAACTGGTAAATACAGAGCTGGTGATGAAGGAAAAATCAACCCTCCACCTCACGGGACTTGTGACAGCTTTCCAGAAGCAGTAGATCATATCCTTCAGCATCTACTAGAACCTAAATGAGTTTTAC
>XM_015608722.2
AGCTTAAATAACTCATGATCATTTTGGATGTCTGCACTGATGGGACAAGAGGGTCCAACATACACAAAGCATGGGTTTGATGTGGCATGTTACATTTCATAATGAGGGTCATCATTGGTCCACCACAATGACTGGTCATGGCATCTCGGCGGGCTCTGAAAGCGGTGCTCATTGACCTAAGTGGAACCCTTCATATTgaggatgctgcggtacctggAGCTCAGGAAGCACTTGCAAGGTTGCGGCAGGCTTCAGTGGCTGTGAAATTTGTAACCAACACAACAAAGGAGTGTAAGAGAACCCTGCATGAGAGACTGCTCCGGCTGAAATTTGACATAGAAGAGCAGGAGATCTTTACCTCACTGACTGCAGCTCGCAACCTGTTAGTGCAGAAGGCGGTGCGCCCTCTGTTGCTGGTAGAGGATAGTGCATTAGAAGACTTTGCAGGTATAGAAACTTCAGATCCTAATGCTGTTGTGATAGGCTTAGCACCAGACCACTTCAACTATCAAATGCTTAATAAAGCTTTTAGATTAATTTTAGATGGTGCTCCACTCATTGCGATTCATAAAGCCCGCTTCTACAAGAGAAAAGATGGACTGGCACTGGGGCCTGGGCCATTTGTGACCGGACTTGAATATGCTACTGACACACAGGCTGCTGTGGTGGGCAAACCTGAGAAAACCTTCTTCCTGGAAGCCCTTCGAGACCTCAACTGCAGCCCAGAGGAGGCAGTGATGATTGGAGATGATGCTAGGGATGATGTTGGTGGTGCTCAGAACACAGGGATGCTGGGAATATTAGTCAAAACTGGTAAATACAGAGCTGGTGATGAAGGAAAAATCAACCCTCCACCTCACGGGACTTGTGACAGCTTTCCAGAAGCAGTAGATCATATCCTTCAGCATCTACTAGAACCTAAATGAGTTTTAC
>XM_022681241.1
CTTTTATTCTGCTTTCTTAAATATCTCTGCAGATATTTCTCTGCGCTGTTAGATAGCAGGACCCTGTTAAACAGACTGGTCATGGCATCTCGGCGGGCTCTGAAAGCGGTGCTCATTGACCTAAGTGGAACCCTTCATATTgaggatgctgcggtacctggAGCTCAGGAAGCACTTGCAAGGTTGCGGCAGGCTTCAGTGGCTGTGAAATTTGTAACCAACACAACAAAGGAGTGTAAGAGAACCCTGCATGAGAGACTGCTCCGGCTGAAATTTGACATAGAAGAGCAGGAGATCTTTACCTCACTGACTGCAGCTCGCAACCTGTTAGTGCAGAAGGCGGTGCGCCCTCTGTTGCTGGTAGAGGATAGTGCATTAGAAGACTTTGCAGGTATAGAAACTTCAGATCCTAATGCTGTTGTGATAGGCTTAGCACCAGACCACTTCAACTATCAAATGCTTAATAAAGCTTTTAGATTAATTTTAGATGGTGCTCCACTCATTGCGATTCATAAAGCCCGCTTCTACAAGAGAAAAGATGGACTGGCACTGGGGCCTGGGCCATTTGTGACCGGACTTGAATATGCTACTGACACACAGGCTGCTGTGGTGGGCAAACCTGAGAAAACCTTCTTCCTGGAAGCCCTTCGAGACCTCAACTGCAGCCCAGAGGAGGCAGTGATGATTGGAGATGATGCTAGGGATGATGTTGGTGGTGCTCAGAACACAGGGATGCTGGGAATATTAGTCAAAACTGGTAAATACAGAGCTGGTGATGAAGGAAAAATCAACCCTCCACCTCACGGGACTTGTGACAGCTTTCCAGAAGCAGTAGATCATATCCTTCAGCATCTACTAGAACCTAAATGAGTTTTAC

Function

symbol description
hdhd2 Predicted to enable phosphatase activity. Predicted to be involved in dephosphorylation. Orthologous to human HDHD2 (haloacid dehalogenase like hydrolase domain containing 2).

NR:

description
haloacid dehalogenase-like hydrolase domain-containing protein 2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260818.3 False 901 mRNA 0.48 6 20403494 20407568
XM_015608722.2 True 933 mRNA 0.47 6 20404354 20407568
XM_022681241.1 False 877 mRNA 0.47 6 20403600 20407568

Neighbor

gene id symbol gene type direction distance location
skor2 skor2,LOC107743073,LOC107653123,LOC107738854,LOC107558682 coding upstream 8338 20381689 ~ 20395156 (+)
smad2 smad2,LOC107743055,LOC107653131 coding upstream 145749 20229527 ~ 20257745 (+)
LOC103027562 NA coding upstream 248179 20152461 ~ 20155315 (+)
LOC103030097 NA coding upstream 253376 20149258 ~ 20150118 (+)
pum3 pum3,k0020,LOC107705054,LOC107742987 coding upstream 470674 19919877 ~ 19932820 (+)
galt galt,LOC107653127,LOC107667272 coding downstream 21194 20428762 ~ 20578785 (+)
LOC103022731 cntfr,LOC107554853,LOC107756542,LOC107738850,LOC107554231 coding downstream 434469 20842037 ~ 21177458 (+)
LOC103023250 NA coding downstream 795694 21203262 ~ 21258587 (+)
cst8 NA coding downstream 877678 21285246 ~ 21295849 (+)
musk musk coding downstream 918644 21326212 ~ 21369274 (+)
G178035 NA non-coding upstream 71491 20331234 ~ 20332003 (+)
G178029 NA non-coding upstream 115915 20287072 ~ 20287579 (+)
G178026 NA non-coding upstream 140720 20261886 ~ 20262774 (+)
G177984 NA non-coding upstream 162575 20236217 ~ 20240919 (+)
G177995 NA non-coding upstream 199943 20199764 ~ 20203551 (+)
G178055 sigmar1,LOC107573076,LOC107653128 non-coding downstream 13801 20421369 ~ 20424714 (+)
G178088 NA non-coding downstream 194883 20602451 ~ 20602789 (+)
G178091 NA non-coding downstream 217211 20624779 ~ 20625028 (+)
G178097 NA non-coding downstream 313505 20721073 ~ 20721391 (+)
G178108 NA non-coding downstream 524213 20931781 ~ 20958483 (+)
ier3ip1 ier3ip1,LOC106633120 other upstream 4329 20396377 ~ 20399165 (+)
G177950 NA other upstream 263930 20138822 ~ 20139564 (+)
LOC103043854 NA other upstream 306783 20089238 ~ 20096711 (+)
LOC103042206 LOC108428882 other upstream 627703 19750942 ~ 19775791 (+)
LOC111194983 NA other upstream 680934 19720301 ~ 19722560 (+)
LOC103046694 LOC108440723,LOC108277161 other downstream 1719553 22127121 ~ 22315307 (+)
LOC103025565 scd5 other downstream 2048751 22456319 ~ 22465729 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other downstream 2079255 22486823 ~ 22491503 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other downstream 2085872 22493440 ~ 22502159 (+)
G178352 NA other downstream 2137072 22544640 ~ 22546130 (+)

Expression


Co-expression Network