sigmar1 (sigmar1,LOC107573076,LOC107653128)


Basic Information

Item Value
gene id sigmar1
gene name sigmar1,LOC107573076,LOC107653128
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 20421350 ~ 20424770 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260819.3
GTCATGCGAGATGGGCCACTGGCCGGTAAGGTTTAGCGTGCTGTGCTGTGCGTTTGAATGGGATTGTGTGAGATAGGTTAGCTAGATGTTGATAGTTTGTTGTGTTGTCTGTTCCAGCTTTGATCCTGCTTTGATCTAGCGTGTTTGATGTCACGTTTTAGGTGATATCTTCGTGGTTATTATCATGTCTCTCACTACGAAATTCCTGAAACTCGTGGTGTTTGTGGGAGTGCTGGTTTTAGCAGGGCAGTACTTGCAGTACTGGCTGGCTCATAAACAGTACATCTTTACCAAGGAGGATGTCGCCAAACTGGCCAAACAGTACGCAGGTCAGGACCACGAGCAGGCCTTCTCTAAAGTGGTGGTGGAGCTGCGGAAGAGGTACCCGGGCCATATCCTGCCTGATGAGGACCTGCAGTGGATATTTGTAAATGCGGGCGGTTGGATGGGCTCCATGTGCCTGCTTCACGCCTCGCTGACTGAATACGTGCTGCTGTTCGGAACCGCTGTGGACACGAGCGGACACTCAGGGCGTTATTTTGCAGAAATCTCAGACACCATAATTTCTGGAAATTTCAGACAATGGAAAGAGGGAACAACTAAAAGCGAGACGTACTACCCAGGAGACACAATAGTGCACGCAGTGGGAGAGGCTACCTCAGTGCAGTGGACTGCTGGGACGTGGATGGTGGAGTACGGCCGAGGATTCATTCCGTCCACTCTGGGCTTTGCTCTAGCAGACACAGTCTTCAGCACGCAGGACTTTCTAACACTATACTACACAGTCCGGGTTTACGTAAAGGGCATGCTGCTGGAGACCAACACCTACCTGACTGAAGCCgggttcttctgaagaccacCGTGCTCTCCAGTTTTACCCTGTGGTTCCTGATTTTGTTAAGTAACAGGACGGGTTTTACTTTAGATTGGCAGATCTGGCAGCAGAGGGGACGGGTTTTTGTAAAGCACTTGCTTTTAACCTTCTAAAAAAACGAGGTTGTGTGATATCTAGATTACTTGACAATCCTGATGGGGGAAATAACAGTTTATTGGTCACTGTACATAATTGTTTCATGTCTTACAGAAATTCACTGTCACTTTAGACTGTTCATACAGTATGTCTAAAAACTTTACCTTCATGTTCTGCAGAAAATACTGTCAAAACACCTTTTGTTCATTTCTGTCCAGCCTTTCTCCAGAATAAActataatttgtaata

Function

symbol description
sigmar1 Acts upstream of or within response to wounding. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in gut; head; muscle; and retina. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 16 and distal spinal muscular atrophy 2. Orthologous to human SIGMAR1 (sigma non-opioid intracellular receptor 1).

NR:

description
sigma non-opioid intracellular receptor 1

GO:

id name namespace
GO:0006869 lipid transport biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005637 nuclear inner membrane cellular_component
GO:0005640 nuclear outer membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20719 SIGMAR1; sigma non-opioid intracellular receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260819.3 True 1220 mRNA 0.47 4 20421350 20424770

Neighbor

gene id symbol gene type direction distance location
katnal2 katnal2,LOC107573073,LOC102797751,LOC104955398 coding downstream 532 20408361 ~ 20420818 (-)
LOC103029139 NA coding downstream 193056 20219002 ~ 20228294 (-)
LOC103029774 NA coding downstream 203156 20168776 ~ 20218194 (-)
LOC111195065 NA coding downstream 257450 20157825 ~ 20163900 (-)
LOC103030413 NA coding downstream 278780 20130604 ~ 20142570 (-)
tmem267 tmem267,si:busm1-79m10.4,LOC107653487,LOC107702605,LOC107750222,LOC107756535,LOC107554236 coding upstream 849750 21274520 ~ 21284697 (-)
rassf6 rassf6 coding upstream 872614 21297384 ~ 21312937 (-)
LOC103045065 lpar1,LOC107554848,LOC107723319 coding upstream 964457 21389227 ~ 21423245 (-)
epha5 epha5,LOC108428864,LOC107702602 coding upstream 1120447 21545217 ~ 21665726 (-)
LOC111194991 NA coding upstream 1497560 21922330 ~ 21923015 (-)
G178069 NA non-coding downstream 22204 20396383 ~ 20399146 (-)
G178036 NA non-coding downstream 89222 20331217 ~ 20332128 (-)
G178030 NA non-coding downstream 134008 20287030 ~ 20287342 (-)
G178014 smad2,LOC107743055,LOC107653131,LOC101470473,LOC101159109 non-coding downstream 163624 20235691 ~ 20257726 (-)
G177967 NA non-coding downstream 302189 20115674 ~ 20119161 (-)
G178086 NA non-coding upstream 154934 20579704 ~ 20581712 (-)
G178090 NA non-coding upstream 191032 20615802 ~ 20616011 (-)
G178096 NA non-coding upstream 292983 20717753 ~ 20718065 (-)
G178134 NA non-coding upstream 417277 20842047 ~ 20842374 (-)
G178157 NA non-coding upstream 831879 21256649 ~ 21265014 (-)
LOC111194984 sh2d4a other downstream 682037 19738649 ~ 19739313 (-)
LOC103035567 LOC103035567,LOC108425166 other downstream 1293227 19119786 ~ 19128123 (-)
G177704 NA other downstream 1329204 19091146 ~ 19092146 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other downstream 1486750 18887028 ~ 18934600 (-)
LOC111195059 NA other downstream 1802738 18614892 ~ 18618612 (-)
G178173 NA other upstream 866752 21291522 ~ 21295833 (-)
G178267 grin3a,LOC107710005,LOC107750958 other upstream 1508749 21933519 ~ 21933831 (-)
G178426 NA other upstream 2030727 22455497 ~ 22456779 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other upstream 2076548 22501318 ~ 22509783 (-)
G178450 NA other upstream 2247362 22672132 ~ 22672683 (-)

Expression


Co-expression Network