LOC103029139


Basic Information

Item Value
gene id LOC103029139
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 20219002 ~ 20228294 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260828.2
AAGTttggtttggtgtgtgttaTGTATTATTGGTTGTCAAGAGCAGCTCAACACAGAGCCTGGCTGAACTGCACAGACATTTACCTACCTGGCTAATCCggttttatttaataagagttttttttttcagcaatgGATTCATTAATTTGTTCTAGATGTAATATGACGTTCAGATCATCAAATTTTCTGGCAAAGCATCGGGAGAAGTTCTGTATTGGAGGTGTTGGTCAGAATGAAGAGTCTGATTTCCATCAAAACCTGAATGAGAGGATAAGAGAATTGAGGAGGATACGGCAGCAGGACAGGCCTAATGCAAGAGCCCAACTCAGCCAGCAGAACATTCACACACCAGCTCAGAACCACATGCAAAAACCCAGCAGTGAACCAACAGCAGGCAGGTCAGAAGATCAGCTCCTTCAGATCCAGCCAAAGATGGACAAGCAGAAGATGGTGAGATCTGTTGACAGCAAACATCTAAACCAGCACAGAGAAGAGATGGACCTGCAGGAACTGCCTGCTCAGAACAGGAAAGTGGCTCTGCTGGAGGAAATGCTGTTCGAGCTACAGGAGCAGGAGAAGAGGAACACCAGTCTACTGGAGTCCCTCATGAATCATCTGCAGCATGTTCCACGGGAGCCTAGGTCTTTTACCTCTAAAGAGAGTCCACACCTGCACATACCTGAGACTAGCAAGCGAGTAGCACAAACCTACCTGCCTGTGTACGACGGTGGAGCTCTTTCTGCAGAAATCAGCACTCTGCGTCTGTCCTACCTGCAGAGTGGAGGGAAGGATTCTCAGATACTGGCTCAGCTGCAGGACCTGTTAGATGAAGCCCTCAAAGTGGAAAAGCAGCCTGGGAAATCTGCTCAGCCCAGGCCCTGTCAGACTGAGAGAACAAAGCAGAGGCCAAAGCCACGAGACCGTAGAAGGGATTTCAGCAGAGAGCTCATATCCACCGAGTGTGAAAACCAGAGGCTGGAGGAGGAAATCATGAGGCTGCAGTTAAGAAGGAGAAGACCTGCAGTCTCCAGGACCACACCTCCAGCTCACTGTCGACCATGTGAGCAGGAGATGAGGAGTATGAAAATGGATATCGACCTGTTAAAGCATGAAATTGAGATTAATCACTTGAAGAGGCAGATTAGAAGCAGAAAGGAGGAGCCTGCGCTTGTGACTTTCCCTCCTCTGGAGGAACCCGGATCCCAGACACCACCCTTCATCAGATACCCCGTGGACGAGGGCTTGGGGCCTGCTCCATATGATCcaatGGCAGGTTTCGTGGTGTTTTATGATTTTCTCCTGGGCCTGTGTCCATCATACAGAGTGTGTCGTCTGATGGTGGGGTTATACACTGGGGATCAGTGTCTGGGAAGCCCCTTTGTGTTGCCCCCAGTCTATTGTGAGCTCTCCAGCTTCTCCTCATTCCCACCTTGGTACAGTCAAGGACAAAAGGCTGCCATTGCCACCAAGCAGGCAGTACCAGAGGTTCAGCCTGCTCCATCAATGTGTCTAGTGATCCAGGTACAGGCCTCAGGAGGATGTGACATCTACGGACAGGAAGTGACCAGTCTAGCCCCACGAGGATGGGTCAAGCTGAACATCTTTGACCATCATCATCGCATCATTAGTGGAAGATGGAAAATACCTGTCCGCATCCTCCCAGCCAAACCTTCAATGACAACTGCAGAAGTCAACTCTGTTCCACAGCTGGACAATGCAGAGCTGTTCCTGAGAATCGTCAACGCAAGAGATGCTGAGATTCAGAGCACAGTTCCGATTAGCACTCACACCGCTGGAATCTACAGATACCCTCCTGTAACATCTCCAAGACAACGCTTTTCCAGGCAGGTTTCCCATGAAGCTGCCAGAAGAACCTCAGCTGTTCCAAGTGCTCAGGTTTATATACCAGCCTTCACACAGAGCCTGGAACCACCTGGACCCACCTGAACACAGAGACTTTCCGTCTCAAAGTACAGCTGCCTTCTGTACATcatgtgtaataaaaaaaaaaaaaacaagtacaaaA
>XM_022681236.1
AAGTttggtttggtgtgtgttaTGTATTATTGGTTGTCAAGAGCAGCTCAACACAGAGCCTGGCTGAACTGCACAGACATTTACCTACCTGGCTAATCCggttttatttaataagagttttttttttcagcaatgGATTCATTAATTTGTTCTAGATGTAATATGACGTTCAGATCATCAAATTTTCTGGCAAAGCATCGGGAGAAGTTCTGTATTGGAGGTGTTGGTCAGAATGAAGAGTCTGATTTCCATCAAAACCTGAATGAGAGGATAAGAGAATTGAGGAGGATACGGCAGCAGGACAGGCCTAATGCAAGAGCCCAACTCAGCCAGCAGAACATTCACACACCAGCTCAGAACCACATGCAAAAACCCAGCAGTGAACCAACAGCAGGCAGGTCAGAAGATCAGCTCCTTCAGATCCAGCCAAAGATGGACAAGCAGAAGATGGTGAGATCTGTTGACAGCAAACATCTAAACCAGCACAGAGAAGAGATGGACCTGCAGGAACTGCCTGCTCAGAACAGGAAAGTGGCTCTGCTGGAGGAAATGCTGTTCGAGCTACAGGAGCAGGAGAAGAGGAACACCAGTCTACTGGAGTCCCTCATGAATCATCTGCAGCATGTTCCACGGGAGCCTAGGAGTCCACACCTGCACATACCTGAGACTAGCAAGCGAGTAGCACAAACCTACCTGCCTGTGTACGACGGTGGAGCTCTTTCTGCAGAAATCAGCACTCTGCGTCTGTCCTACCTGCAGAGTGGAGGGAAGGATTCTCAGATACTGGCTCAGCTGCAGGACCTGTTAGATGAAGCCCTCAAAGTGGAAAAGCAGCCTGGGAAATCTGCTCAGCCCAGGCCCTGTCAGACTGAGAGAACAAAGCAGAGGCCAAAGCCACGAGACCGTAGAAGGGATTTCAGCAGAGAGCTCATATCCACCGAGTGTGAAAACCAGAGGCTGGAGGAGGAAATCATGAGGCTGCAGTTAAGAAGGAGAAGACCTGCAGTCTCCAGGACCACACCTCCAGCTCACTGTCGACCATGTGAGCAGGAGATGAGGAGTATGAAAATGGATATCGACCTGTTAAAGCATGAAATTGAGATTAATCACTTGAAGAGGCAGATTAGAAGCAGAAAGGAGGAGCCTGCGCTTGTGACTTTCCCTCCTCTGGAGGAACCCGGATCCCAGACACCACCCTTCATCAGATACCCCGTGGACGAGGGCTTGGGGCCTGCTCCATATGATCcaatGGCAGGTTTCGTGGTGTTTTATGATTTTCTCCTGGGCCTGTGTCCATCATACAGAGTGTGTCGTCTGATGGTGGGGTTATACACTGGGGATCAGTGTCTGGGAAGCCCCTTTGTGTTGCCCCCAGTCTATTGTGAGCTCTCCAGCTTCTCCTCATTCCCACCTTGGTACAGTCAAGGACAAAAGGCTGCCATTGCCACCAAGCAGGCAGTACCAGAGGTTCAGCCTGCTCCATCAATGTGTCTAGTGATCCAGGTACAGGCCTCAGGAGGATGTGACATCTACGGACAGGAAGTGACCAGTCTAGCCCCACGAGGATGGGTCAAGCTGAACATCTTTGACCATCATCATCGCATCATTAGTGGAAGATGGAAAATACCTGTCCGCATCCTCCCAGCCAAACCTTCAATGACAACTGCAGAAGTCAACTCTGTTCCACAGCTGGACAATGCAGAGCTGTTCCTGAGAATCGTCAACGCAAGAGATGCTGAGATTCAGAGCACAGTTCCGATTAGCACTCACACCGCTGGAATCTACAGATACCCTCCTGTAACATCTCCAAGACAACGCTTTTCCAGGCAGGTTTCCCATGAAGCTGCCAGAAGAACCTCAGCTGTTCCAAGTGCTCAGGTTTATATACCAGCCTTCACACAGAGCCTGGAACCACCTGGACCCACCTGAACACAGAGACTTTCCGTCTCAAAGTACAGCTGCCTTCTGTACATcatgtgtaataaaaaaaaaaaaaacaagtacaaaA
>XM_022681237.1
AGATCATCAAATTTTCTGGCAAAGCATCGGGAGAAGTTCTGTATTGGAGGTGTTGGTCAGAATGAAGAGTCTGATTTCCATCAAAACCTGAATGAGAGGATAAGAGAATTGAGGAGGATACGGCAGCAGGACAGGCCTAATGCAAGAGCCCAACTCAGCCAGCAGAACATTCACACACCAGCTCAGAACCACATGCAAAAACCCAGCAGTGAACCAACAGCAGGCAGGTCAGAAGATCAGCTCCTTCAGATCCAGCCAAAGATGGACAAGCAGAAGATGcCATCTGAAGACCCACTGGTTGGTTGCAGAGATGGACCTGCAGGAACTGCCTGCTCAGAACAGGAAAGTGGCTCTGCTGGAGGAAATGCTGTTCGAGCTACAGGAGCAGGAGAAGAGGAACACCAGTCTACTGGAGTCCCTCATGAATCATCTGCAGCATGTTCCACGGGAGCCTAGGTCTTTTACCTCTAAAGAGAGTCCACACCTGCACATACCTGAGACTAGCAAGCGAGTAGCACAAACCTACCTGCCTGTGTACGACGGTGGAGCTCTTTCTGCAGAAATCAGCACTCTGCGTCTGTCCTACCTGCAGAGTGGAGGGAAGGATTCTCAGATACTGGCTCAGCTGCAGGACCTGTTAGATGAAGCCCTCAAAGTGGAAAAGCAGCCTGGGAAATCTGCTCAGCCCAGGCCCTGTCAGACTGAGAGAACAAAGCAGAGGCCAAAGCCACGAGACCGTAGAAGGGATTTCAGCAGAGAGCTCATATCCACCGAGTGTGAAAACCAGAGGCTGGAGGAGGAAATCATGAGGCTGCAGTTAAGAAGGAGAAGACCTGCAGTCTCCAGGACCACACCTCCAGCTCACTGTCGACCATGTGAGCAGGAGATGAGGAGTATGAAAATGGATATCGACCTGTTAAAGCATGAAATTGAGATTAATCACTTGAAGAGGCAGATTAGAAGCAGAAAGGAGGAGCCTGCGCTTGTGACTTTCCCTCCTCTGGAGGAACCCGGATCCCAGACACCACCCTTCATCAGATACCCCGTGGACGAGGGCTTGGGGCCTGCTCCATATGATCcaatGGCAGGTTTCGTGGTGTTTTATGATTTTCTCCTGGGCCTGTGTCCATCATACAGAGTGTGTCGTCTGATGGTGGGGTTATACACTGGGGATCAGTGTCTGGGAAGCCCCTTTGTGTTGCCCCCAGTCTATTGTGAGCTCTCCAGCTTCTCCTCATTCCCACCTTGGTACAGTCAAGGACAAAAGGCTGCCATTGCCACCAAGCAGGCAGTACCAGAGGTTCAGCCTGCTCCATCAATGTGTCTAGTGATCCAGGTACAGGCCTCAGGAGGATGTGACATCTACGGACAGGAAGTGACCAGTCTAGCCCCACGAGGATGGGTCAAGCTGAACATCTTTGACCATCATCATCGCATCATTAGTGGAAGATGGAAAATACCTGTCCGCATCCTCCCAGCCAAACCTTCAATGACAACTGCAGAAGTCAACTCTGTTCCACAGCTGGACAATGCAGAGCTGTTCCTGAGAATCGTCAACGCAAGAGATGCTGAGATTCAGAGCACAGTTCCGATTAGCACTCACACCGCTGGAATCTACAGATACCCTCCTGTAACATCTCCAAGACAACGCTTTTCCAGGCAGGTTTCCCATGAAGCTGCCAGAAGAACCTCAGCTGTTCCAAGTGCTCAGGTTTATATACCAGCCTTCACACAGAGCCTGGAACCACCTGGACCCACCTGAACACAGAGACTTTCCGTCTCAAAGTACAGCTGCCTTCTGTACATcatgtgtaataaaaaaaaaaaaaacaagtacaaaA

Function

GO:

id name namespace
GO:0038023 signaling receptor activity molecular_function
GO:0060089 molecular transducer activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260828.2 True 2026 mRNA 0.49 13 20219002 20228294
XM_022681236.1 False 2008 mRNA 0.49 13 20219002 20228294
XM_022681237.1 False 1841 mRNA 0.50 13 20219002 20228123

Neighbor

gene id symbol gene type direction distance location
LOC103029774 NA coding downstream 808 20168776 ~ 20218194 (-)
LOC111195065 NA coding downstream 55102 20157825 ~ 20163900 (-)
LOC103030413 NA coding downstream 76432 20130604 ~ 20142570 (-)
LOC103028513 NA coding downstream 109841 20106939 ~ 20109161 (-)
sh3bp2 sh3bp2 coding downstream 185063 19994322 ~ 20033939 (-)
katnal2 katnal2,LOC107573073,LOC102797751,LOC104955398 coding upstream 180067 20408361 ~ 20420818 (-)
sigmar1 sigmar1,LOC107573076,LOC107653128 coding upstream 193056 20421350 ~ 20424770 (-)
tmem267 tmem267,si:busm1-79m10.4,LOC107653487,LOC107702605,LOC107750222,LOC107756535,LOC107554236 coding upstream 1046226 21274520 ~ 21284697 (-)
rassf6 rassf6 coding upstream 1069090 21297384 ~ 21312937 (-)
LOC103045065 lpar1,LOC107554848,LOC107723319 coding upstream 1160933 21389227 ~ 21423245 (-)
G177967 NA non-coding downstream 99841 20115674 ~ 20119161 (-)
G177910 NA non-coding downstream 223221 19990445 ~ 19995781 (-)
G177911 NA non-coding downstream 327226 19891534 ~ 19891776 (-)
G177902 NA non-coding downstream 351102 19865415 ~ 19867900 (-)
G177821 NA non-coding downstream 478447 19740206 ~ 19740555 (-)
G178014 smad2,LOC107743055,LOC107653131,LOC101470473,LOC101159109 non-coding upstream 7397 20235691 ~ 20257726 (-)
G178030 NA non-coding upstream 58736 20287030 ~ 20287342 (-)
G178036 NA non-coding upstream 102923 20331217 ~ 20332128 (-)
G178069 NA non-coding upstream 168089 20396383 ~ 20399146 (-)
G178086 NA non-coding upstream 351410 20579704 ~ 20581712 (-)
LOC111194984 sh2d4a other downstream 479689 19738649 ~ 19739313 (-)
LOC103035567 LOC103035567,LOC108425166 other downstream 1090879 19119786 ~ 19128123 (-)
G177704 NA other downstream 1126856 19091146 ~ 19092146 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other downstream 1284402 18887028 ~ 18934600 (-)
LOC111195059 NA other downstream 1600390 18614892 ~ 18618612 (-)
G178173 NA other upstream 1063228 21291522 ~ 21295833 (-)
G178267 grin3a,LOC107710005,LOC107750958 other upstream 1705225 21933519 ~ 21933831 (-)
G178426 NA other upstream 2227203 22455497 ~ 22456779 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other upstream 2273024 22501318 ~ 22509783 (-)
G178450 NA other upstream 2443838 22672132 ~ 22672683 (-)

Expression


Co-expression Network