LOC103030097


Basic Information

Item Value
gene id LOC103030097
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 20149258 ~ 20150118 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260831.3
CATCCCACCACTACGTCTCTTCATCTTCTGCTGCTTCTTGTGCTTCTCCTGCTGCTTTATTTTCCACACATAAGtgagtgtaataataataatcttcacAGCTGACCAATGCGCACTCCTGGAGTGTTGATTTTCGGACTGGTCTTAGCACCTTGCGGTTGGATCTTGGACCTGACGAGCACAGTATCCCCCAGCTGGCGCACCGTTCAGTACATCACAGGACAACCTCAAGATCTGGTGCTACAACAAGGACTATGGGACATATGCAGGACCTTCACCACGTCCAGAACCGTCTACTGCAACCAACAGGACAGTGAATACTTCGCCAACCAGGTAGTTACAACCAGCCAAAGGCTGATGGTGACATCTTTGGTTATTAACCTTATAGGTCTGGCTGTGGTCTCAGCTGGAGTGAAGTGTTGGAGCGATAGACCACCCAACTGGACCGTGACTGGGATTGGTGGCTTTCTGGTTTTCTTCTCAGGGATTCTTTCCCTCATCCCCATCGCCTGGTTTACCAACATGATTCACAACATCAAATCCCCGTCTACAGACATCCGTGTTGGGTACTGTATTGTGCTGGGCTACATGGGGAGTCTGATGAACGTTCTTGGTGGAGGCGCCATGTTTGCTGGAATACGGAAGTGCTGTGGTGGGCTGAACCGTGGGGAGAAGCACAGCATGGAGGATCGGTTTGAAGCTGTTGTGGCACCAGAGGTCAACAGGAACCTGGGTAGGCCAAACCGGGATCCAAATCCTAGAGATTTACCTCAGGATAACCAGAGGGAAACCAGCTCACCACATAGGAGTCAAGAGAATGGACTGGTCAACTCATCGTACAGCCACCATGCTGATTCATGA

Function

GO: NA

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260831.3 True 861 mRNA 0.50 1 20149258 20150118

Neighbor

gene id symbol gene type direction distance location
pum3 pum3,k0020,LOC107705054,LOC107742987 coding upstream 216438 19919877 ~ 19932820 (+)
LOC103023409 co-prmt,LOC108428880 coding upstream 230281 19896737 ~ 19918977 (+)
erbin erbin,erbb2ip,LOC107667260,LOC107726559,LOC107705051,LOC107742960 coding upstream 497840 19594101 ~ 19651418 (+)
nln nln,LOC107705053,LOC107667266,LOC107548669 coding upstream 627185 19503557 ~ 19522073 (+)
trappc13 trappc13,LOC107667267 coding upstream 674081 19459956 ~ 19475177 (+)
LOC103027562 NA coding downstream 2343 20152461 ~ 20155315 (+)
smad2 smad2,LOC107743055,LOC107653131 coding downstream 79409 20229527 ~ 20257745 (+)
skor2 skor2,LOC107743073,LOC107653123,LOC107738854,LOC107558682 coding downstream 231571 20381689 ~ 20395156 (+)
hdhd2 hdhd2,LOC107738843,LOC107743237 coding downstream 253376 20403494 ~ 20407568 (+)
galt galt,LOC107653127,LOC107667272 coding downstream 278644 20428762 ~ 20578785 (+)
LOC111195064 NA non-coding upstream 25410 20105334 ~ 20123848 (+)
G177940 NA non-coding upstream 48456 20100576 ~ 20100802 (+)
G177885 NA non-coding upstream 154091 19990644 ~ 19995167 (+)
LOC111195063 NA non-coding upstream 193784 19949596 ~ 19955474 (+)
G177861 NA non-coding upstream 258545 19890267 ~ 19890713 (+)
G177955 NA non-coding downstream 7729 20157847 ~ 20163869 (+)
G177976 NA non-coding downstream 21167 20171285 ~ 20173721 (+)
G177995 NA non-coding downstream 49646 20199764 ~ 20203551 (+)
G177984 NA non-coding downstream 86099 20236217 ~ 20240919 (+)
G178026 NA non-coding downstream 111768 20261886 ~ 20262774 (+)
G177950 NA other upstream 9694 20138822 ~ 20139564 (+)
LOC103043854 NA other upstream 52547 20089238 ~ 20096711 (+)
LOC103042206 LOC108428882 other upstream 373467 19750942 ~ 19775791 (+)
LOC111194983 NA other upstream 426698 19720301 ~ 19722560 (+)
LOC103024155 si:dkey-81j8.6,LOC108440140,LOC107720718,LOC107572716,LOC107678005,LOC105904646 other upstream 1590814 18539898 ~ 18558444 (+)
ier3ip1 ier3ip1,LOC106633120 other downstream 246259 20396377 ~ 20399165 (+)
LOC103046694 LOC108440723,LOC108277161 other downstream 1977003 22127121 ~ 22315307 (+)
LOC103025565 scd5 other downstream 2306201 22456319 ~ 22465729 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other downstream 2336705 22486823 ~ 22491503 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other downstream 2343322 22493440 ~ 22502159 (+)

Expression


Co-expression Network