LOC107197005


Basic Information

Item Value
gene id LOC107197005
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 13266674 ~ 13267839 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015601938.2
AAGACAATGAGTATGCAAAGCCCAACAGATTCAATTCAGAATAATTCTCTTATTCATCCTCCAGGTTTTTATATCATTGGTCTTATCTCTATGCCTTTTGCAAATGTATATGTCATTTTCTTAACTTTGCTTTATGTCATAACTGTCATTTGTAACTGTTTTGTAATCTGCATTATTTGCATGGATCACCATTTGCATGTTCCCAAGTTCATTGGAGTGGGGAACTTAGCAGTGGTGGATTTGATCCTCAGTTCATCTCTCATCTTTGCTATGATTAAGATCTATCTGTTCAAAGACAATTTTGTGGAATTTAAATTGTGCTTGGTGCAAATGTACATATACTATTCTTTTTTAACACTTGAAGCCTTTTCCATTGCCATTCTCGCTTTTGATCGATTAATTGCAATATGTTTTCCTCTGAGACAGAACACCATTAACACGCCTACCACCATGACTGCTATTGTAGCTGCAATGTGGACACTTAGCCACGGTGTCACAATTTTAGCTGTTGCAGCTATGACGTATCTGTCCttctgtaattcagttcaagTCAACAGCTATTTCTGTGACTATGGACCAGTTTTCAGACTAGCTTGTAATGATAATTCACTACAGTGGACCCTTGCCACAGTTCTGATTTTGTTGTGCAATATTGTCCCTCTGAGCTTCATTGTTTTGTCTTACACGTGTATTTTAATTTCTGTATTCCAAATGAAAAGTGTGGAAAGTCGATTTAAAGCTCTTGCCACATGTACAGAACATCTTATTCTTGTGGCCTTTTTCTATATTCCTATGTGTATCATTTTCCTGGTTGGACTTTTTCGAGTTCCAATCAACCAGGATCTGAGAATAGTTGGTTTGTCTATTTGTTCCTTTATCACACCCTGTACAAACCCCATTATCTATTCACTAAAAACCAAAGAGCTCAAGAGCAGAGTTTATTTTCTGATCAATAGAACATTTCATATTCAGAGACGTTCTGTTCATCCACTTCATAAGACATGAACAATTATCAATTTCCAGAGGTGTAAAGATTTATAGTTTTGAATAAGTAAAACTGAAGTCAATTGTAATGTTatacatatgttttatattcatttaattacACCTTGGGACAGGTTTAATGTTGttgggttattttatttttctattctcTCACACATAAG

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015601938.2 True 1166 mRNA 0.35 1 13266674 13267839

Neighbor

gene id symbol gene type direction distance location
LOC103041391 LOC108439213 coding downstream 247185 13017526 ~ 13019489 (-)
LOC103040161 NA coding downstream 255020 13007817 ~ 13011654 (-)
uspl1 NA coding downstream 477693 12778011 ~ 12788981 (-)
alox5ap alox5ap,LOC107697405,LOC107583340,LOC107743481,LOC102776613,LOC107579207,LOC107741175 coding downstream 497716 12764188 ~ 12768958 (-)
btg3 btg3,LOC102786047 coding downstream 505048 12758226 ~ 12761626 (-)
LOC103021997 NA coding upstream 8128 13275967 ~ 13277821 (-)
f9 NA coding upstream 61155 13328994 ~ 13337460 (-)
LOC103031773 NA coding upstream 166725 13434564 ~ 13439104 (-)
htatsf1 htatsf1 coding upstream 171822 13439661 ~ 13450272 (-)
LOC111195110 NA coding upstream 185421 13453260 ~ 13481137 (-)
LOC111195045 NA non-coding downstream 67713 13197213 ~ 13198961 (-)
G175715 NA non-coding downstream 83995 13052910 ~ 13182679 (-)
G175703 NA non-coding downstream 90383 13175235 ~ 13176291 (-)
G175716 NA non-coding downstream 96551 13168809 ~ 13170123 (-)
G175714 NA non-coding downstream 197142 13065640 ~ 13069532 (-)
G176017 NA non-coding upstream 115748 13383587 ~ 13384524 (-)
G176043 NA non-coding upstream 295967 13563806 ~ 13564134 (-)
G176069 NA non-coding upstream 471757 13739596 ~ 13740266 (-)
G176099 NA non-coding upstream 599967 13867806 ~ 13868388 (-)
G176145 NA non-coding upstream 781992 14049831 ~ 14050301 (-)
LOC103044870 NA other downstream 12106 13252157 ~ 13254568 (-)
LOC111195039 NA other downstream 259613 13003387 ~ 13007061 (-)
G175707 NA other downstream 269740 12988937 ~ 12996934 (-)
G175647 NA other downstream 368044 12897040 ~ 12898630 (-)
G175583 NA other downstream 643119 12623211 ~ 12623555 (-)
LOC111195047 LOC107688027,LOC107751101,LOC107731862,LOC106606817,LOC106579815,LOC107570926,LOC107688028,LOC107689570,LOC107565351 other upstream 137442 13405281 ~ 13407280 (-)
G176058 NA other upstream 403933 13671772 ~ 13674482 (-)
LOC111195111 NA other upstream 478797 13746636 ~ 13748650 (-)
tex14 NA other upstream 506964 13774803 ~ 13814510 (-)
G176146 LOC108415819 other upstream 783723 14051562 ~ 14051961 (-)

Expression


Co-expression Network