LOC103031551


Basic Information

Item Value
gene id LOC103031551
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 26811030 ~ 26815128 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015602137.2
acacatACACCTATAAAGGTACTTATGTTCACTCTGCCTTCACTGCATCTATAGCAGCAGAATCTACACTCAGGGTGAGAAATGGTAACAAGAACCGTATCTGTAAATTAATCAGGGCCCTGATAAGTCTTCGCCGAGGAGCCTCACTGGTGCCTTATTTACCTGAAGCCTGTAACACGTGTGCTACTGAGGAAGATAAACCCAGTTATCTGTCTTTGGTCTTTGTCCCCCTGCAGGGTGGCCCACATTACTGACAAGGTTTGCCAGCCACGGGGCGACACCCGAGCAGGCCTTCGCTTACTCTTTACAGCAAATCTGCTTGTGAGCCATTCAGACTCATCCATTATTGAACGTCCACAGTTTCCGTTTCATGGAAAGcgagaagacagagagaaaaacaaacagcgGGTGCCGCCACCCAGACAGGCACAGTGGTCAGTGGAACGGCGGACAGCATGGAGGACGGCCAGACAGACTGCATGGGTGTACACAATGAGAtacagacagaaacacaaagTGTGCCACTCTCTCAGCCTTCCGAGGAGCAGCCCATTATACAACAGGATAATCAAGATCAGgaaaatcCTAAGAGCTGCAGTGAGAATGAACAAGAAACACATGCTGATCCTGAGctagaagaaaaaaatcagaaaccTCATGAAGAATCTGAAGAGTATGAAGAAGAGCAAAATCTAGATGAACAACAGGAGGAATGGTTTGAACTAGAAGAACAGCTCCAGTCCTCGTATCTAATGTCAGGCTATGAAGGTGTGCCCACTAACACAAAGGGAATCTCCTCTGAACTCTGCTGGTACTGCATTAAATCCCTTCCGAGTGAAGAACAAAGTTTACCACAGCTCCAGCTGGAGAATGAGGCTTTAGCCACACTCAATGGTGGTGAGCACTTAAACTACCTTCAGGACCCCAGGCCTCATTTTGGGGTGGCACGCTCCTCGCGCTCTATACCTTTCCCACTGTGGGACAGTGAGCGTCCCAGAGAGATGAAGAGGGATGCAGATGAGGAGGATGCAGATTTTGTTACTAGTTGCCCGCACTGCCATCTGGGGCTTCCACTTGATACATTACGCTGGCATgagGAAAAATGCCTGTCATTTGAAGGCCCGAAAACGGATGCGTGAAATTAAATGTCAAGGGGAAAGAGGTCAGGTTTATGATTTACTGAATTGTTAGATCAGAAGCAAGCCTGTCTGAAGCAAGTAATTTGTGCAGCAATAAggagttcatttatttaaaaaaaggctgtCAGCTATTGTACAATATTTCCTTCgtaaaactatttataaattatGTTACAGGATGACGTTTTATTAGCTTTGATAGACAGTATTAGTGCCTAGGTTTGTTAGACTGCATGCTGCATCATTAGTTATATTtaatctgttttcttttttaatttagtatattGTTGACTGCCTTTGAATGGAATGTATAGTAAGACACAGGATTGATGAGATTTAATACTACTAATCTTACCTATAGTTttgaacactttattaagatatattaaTGCTAAATGTAAATATCTGTTGTAATGTGCAATGCtgtcaaataaatgctttattaaCTTTG

Function

GO:

id name namespace
GO:0051172 negative regulation of nitrogen compound metabolic process biological_process
GO:0031324 negative regulation of cellular metabolic process biological_process
GO:0051248 negative regulation of protein metabolic process biological_process
GO:0032269 negative regulation of cellular protein metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015602137.2 True 1590 mRNA 0.43 6 26811030 26815128

Neighbor

gene id symbol gene type direction distance location
LOC103046333 slc25a1a,LOC108424536,LOC107586170,LOC107708615,LOC107720673,LOC107554324,LOC108276564,LOC105890537 coding downstream 11777 26794394 ~ 26799253 (-)
ltn1 ltn1 coding downstream 28853 26752892 ~ 26782177 (-)
LOC103044637 paxbp1,LOC107592156 coding downstream 1288632 25508722 ~ 25522398 (-)
LOC103044157 slc7a1,LOC103044157,LOC108410642,LOC107592154,LOC107720662,LOC107685000,LOC108277031 coding downstream 1304165 25480188 ~ 25506865 (-)
LOC103043328 LOC108444414 coding downstream 1447707 25359232 ~ 25363323 (-)
LOC103023750 LOC108424450 coding upstream 7611 26822739 ~ 26825856 (-)
LOC103027750 zgc:103508,cssa04h17orf49,LOC108424543,LOC107720679,LOC107742347,LOC107702799 coding upstream 94083 26909211 ~ 26912823 (-)
med11 med11,LOC107720680,LOC107676028 coding upstream 101206 26916334 ~ 26919843 (-)
LOC103028079 arrb2,LOC100335038,LOC106567894,LOC105023937,LOC101076921 coding upstream 112041 26927169 ~ 26939923 (-)
tmem126a NA coding upstream 173489 26988617 ~ 26991633 (-)
G179306 NA non-coding downstream 114454 26592235 ~ 26696576 (-)
G179304 NA non-coding downstream 242960 26567644 ~ 26568070 (-)
G179297 NA non-coding downstream 452670 26357983 ~ 26358360 (-)
G179288 NA non-coding downstream 622689 26135533 ~ 26188341 (-)
G179193 NA non-coding downstream 754904 26055244 ~ 26056126 (-)
G179475 NA non-coding upstream 57450 26872578 ~ 26874563 (-)
G179487 LOC108424537 non-coding upstream 62448 26877576 ~ 26879423 (-)
G179490 NA non-coding upstream 69318 26884446 ~ 26889085 (-)
G179524 NA non-coding upstream 195396 27010524 ~ 27010818 (-)
G179528 NA non-coding upstream 200617 27015745 ~ 27015966 (-)
LOC103047293 LOC108410718,LOC106581537 other downstream 946556 25656255 ~ 25864474 (-)
LOC103043022 LOC108410630,LOC107556853 other downstream 1338786 25363932 ~ 25472244 (-)
thsd1 thsd1 other downstream 1507947 25293675 ~ 25303083 (-)
LOC103025094 zgc:171929,LOC107690845,LOC107575147,LOC107671611,LOC105905449 other downstream 1603644 25203325 ~ 25207386 (-)
G178982 hint1,LOC107665476 other downstream 1676874 25130982 ~ 25134156 (-)
G179569 NA other upstream 625103 27440231 ~ 27443316 (-)
ift46 ift46 other upstream 654958 27470086 ~ 27477978 (-)
LOC103038646 zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012 other upstream 708003 27523131 ~ 27524135 (-)
G179583 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 709200 27524328 ~ 27525388 (-)
G179578 LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586 other upstream 746717 27561845 ~ 27566692 (-)

Expression


Co-expression Network