LOC103034638 (LOC108437817)


Basic Information

Item Value
gene id LOC103034638
gene name LOC108437817
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 10690842 ~ 10695462 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015602578.2
ctcactccctAACCTTCAAATCCGGTGAGTTGATCTCTCCTTTCACTCCATCCATATTCATAACAATGCTCCTGTTGTGCGTCCTCACAAACGTTTGCACTCAAGTTTTCCAGcgaaaaaaaatctcagaagTTTTTTTCTAGAACTGTAACTTGGTTTCTCCCCCATTTTCCATGGAGCTGCGGGTGTTTCAGGTTCCATACACTGCTCTGATGCTCTCTATGCTGGGCAGTTCGCTAGCTCAGCTCCGTTACAGCGTTCCCGAGGAGATGGAGCACGGCGCCTTCGTGGGAAACCTGGCTGAGGACCTCGGGCTCCGTCCCAGCGAGCTTTCCGAGCGCAAGTTTCGGCTTGTCTCGGGCACCAGGAGGCGCTACTTGGAGGTAAACATGGAAAACGGGGTGCTATTCGTGAACGAACGCGTCGATCGCGAACAACTTTGTGAACAGAGCCCCTTGTGCTTCCTTCACCTGCAAGCCGTCTTAGAAAACCCACTCGAGCTACACCGCGTGGAGTTGGAAGTGCTGGATGTAAACGACAACGCACCGAACTTTCCGCGCGCCGGTTTTAGCCTGGACATCTCCGAGTCGGCAACGCCCGGCTCGCGCTTTCCACTCGAAAGCGCTCAGGACGCGGACGTGGGCGAGAACGCCCTGCGCTCGTACCTGCTCAGCGTGAACGCGCACTTCGCACTAGACGTGCGCGCAGGCAAGTTTGCTGAGCTCGTGCTACAAAGGCCGTTAGACAGGGAGCAGCAGGGTGCGCACCACATGGTGATCACTGCCGTGGACGGGGGCTCTCCAGAGCGCTCTGGAAGCGCGCACCTCAACGTGACGGTGGTGGATGCCAATGACAACGCGCCCGCGTTCGAGCGCGAGACGTACCGCGCGAAGGTGATGGAGAATGCACACAGGGGTACCGTGGTCATCCGACTCAACGCCACGGATCCTGATGAGGGCCTAAACGGCGAGGTCATGTACTCCTTCAGTGGGCACGCACCCGCCAAGGTGCGCGAGCTTTTTTCTGTGGATCCAAGGACTGGAGAAGTTCGAGTGAGAGGGCTCGTGGACTATGAAAAGGCTACTATGCACGAGATCTACGTCCAAGCAAAAGACAAAGGGCCCAATGCAATAGCTGTCCACTGTAAGGTGCTGGTAACTGTTGTGGACGTCAATGACAATCGCCCTGAAGTCATACTTACCTCCACGTCCGCTCCAGTCCAGGAGGATGCACTGCCTGGTACAGTAATCGCAGTCATCAGCGTGATGGACCAGGATTCAGGAGAAAACGGGCATGTAGACTGCGAGATTCCCCATCATGTACCATTTCAATTGCATTCCTCTTTTAAGAACTATTACACTTTAGTTACCTCGGACTTTTTGGACAGAGAGAAAGTTCCGGAATACAACATTACCCTCACTGCCAGAGATATGGGCTCTCCACCACTCTTTACCAGGAAGACCATTGTGGTCCAGGTGGCCGATGTGAACGACAATGCACCTGTTTTTAAGCAACCCTCTTACAATGTTTACTTGACGGAGAACAACCCTCCAGGTTTTTCAGTATTCACCATCTCAGCCCAGGATGCAGATGCAGGACAAAACTCGTACCTTTCCTATTCAGTTCTGGAAACTGACATTCAAGGGGCGCCAGCGTCCACATATGTGTCCATCAACTCAGACAACGGCAACATCTATGCATTGCGTTCTTTCGACCGAGAACAGCTTAAGAGTTTTCAACTAGTGATCCAAGCCAAGGATGCTGGACTTCCTCCACAGGTCAGCAACATGACATTGAATGTCTTTGTACTTGACCAGAACGACAATGCCCCAGTGATAGTATCCCCTCTACCGGAAAATGGCACGGCAGCCAACGAAATCATTCCCACATCAGCGGATGCAGGACACCTTGTGGCTAAAGTCACAGCCACGGATGTGGATGAGGGTCAGAATGCAAAGCTTTTGTATCAAATGCTCCAAGCCACAGACCCCACCCTGGTCAGCATCGCCCTCTTCACGGGGGAGGTCAGGATGATCCGCAGCCTAAGGGACGGAGACCCTACCACGCACAGACTGCTCATTTTGGTCAAGGACAGCGGTGAGCCGTCGCTCTCGGCCACAGCATCCATCATTCTGTCTGTTGTTGACAGCGAGCCTGAATTCAGTGACCTCCCGAAGCGCCCCGGGGACCATGCGCTCTATCTAATAGTGTCCTTAGGTGCAGTTTCCTTCACGTTTCTGGTGGCTATCATCGTCCTGGCTGCAATTAAGGGATACAGGCGCAGGCTTTCCAAATATGACAACTCCTGTTGTGGCTTCAGCCCCAAGGCCTCCACTACCGAGGACATGAAATCTAATTTAAATGTGCGCATATCTCCAGTTCCCAATGGAGCTGCAGATACTATGGATGTAAACAGCGGTGCCCAACTGGGTCAAAACTACTGCTACAAAATGTGCTTGACTCCAGAGTCATCTAAAAGTGACTTTATGTTTCTGAAGCCCTACAGCCCGACAGGGTCAGCTCTCCACATTAATAATAGCAGGACAGTAGAAAACAACACGTCGACCTGGAGTCCAGAGATCCAAAGGCTTAATGCAAACTACACTAATGCTTCCCTAAGAGAGTTTAAACAAGCTAATAAAGACTGGACGCTGTTAAAGAACCAACAGAATTTTGCCCACAAAAGTTCTGCAACAGTAGTGAAGACCCTACAGCGCAGAGTCATTCTGGACCACTCGGATATGTGCGCCTGCCCTGGAGCAACACAATACTGGACCTGGGGCAGCCATATGTGGGATTACAAGACATCATCTGAGGTTGGTGGTCTTACAGATCGCTGCTGGACCCCTCGGTTTGACTATCAGCATAACGTTTACATCCCTGGGACGCCGAGCTCATTTAGACCTGCCAGCCACGGAGATTTAGATATCTACAACTCATTTTCTACGTTtggaaagaagaagaaactaACGGCAAACCACGACCAGCACGAGGATACCATTATAACCAACGACCTTTTCAAATGAGTTTCAGGAAAACtgattttatgttgttttgtttgatttgtataATTTATTGGACTCTTGATGATTAGAGGAATCCTGATTATTCGTTTCCTAAA
>XM_022681042.1
ctcactccctAACCTTCAAATCCGGTGAGTTGATCTCTCCTTTCACTCCATCCATATTCATAACAATGCTCCTGTTGTGCGTCCTCACAAACGTTTGCACTCAAGTTTTCCAGcgaaaaaaaatctcagaagTTTTTTTCTAGAACTGTAACTTGGTTTCTCCCCCATTTTCCATGGAGCTGCGGGTGTTTCAGGTTCCATACACTGCTCTGATGCTCTCTATGCTGGGCAGTTCGCTAGCTCAGCTCCGTTACAGCGTTCCCGAGGAGATGGAGCACGGCGCCTTCGTGGGAAACCTGGCTGAGGACCTCGGGCTCCGTCCCAGCGAGCTTTCCGAGCGCAAGTTTCGGCTTGTCTCGGGCACCAGGAGGCGCTACTTGGAGGTAAACATGGAAAACGGGGTGCTATTCGTGAACGAACGCGTCGATCGCGAACAACTTTGTGAACAGAGCCCCTTGTGCTTCCTTCACCTGCAAGCCGTCTTAGAAAACCCACTCGAGCTACACCGCGTGGAGTTGGAAGTGCTGGATGTAAACGACAACGCACCGAACTTTCCGCGCGCCGGTTTTAGCCTGGACATCTCCGAGTCGGCAACGCCCGGCTCGCGCTTTCCACTCGAAAGCGCTCAGGACGCGGACGTGGGCGAGAACGCCCTGCGCTCGTACCTGCTCAGCGTGAACGCGCACTTCGCACTAGACGTGCGCGCAGGCAAGTTTGCTGAGCTCGTGCTACAAAGGCCGTTAGACAGGGAGCAGCAGGGTGCGCACCACATGGTGATCACTGCCGTGGACGGGGGCTCTCCAGAGCGCTCTGGAAGCGCGCACCTCAACGTGACGGTGGTGGATGCCAATGACAACGCGCCCGCGTTCGAGCGCGAGACGTACCGCGCGAAGGTGATGGAGAATGCACACAGGGGTACCGTGGTCATCCGACTCAACGCCACGGATCCTGATGAGGGCCTAAACGGCGAGGTCATGTACTCCTTCAGTGGGCACGCACCCGCCAAGGTGCGCGAGCTTTTTTCTGTGGATCCAAGGACTGGAGAAGTTCGAGTGAGAGGGCTCGTGGACTATGAAAAGGCTACTATGCACGAGATCTACGTCCAAGCAAAAGACAAAGGGCCCAATGCAATAGCTGTCCACTGTAAGGTGCTGGTAACTGTTGTGGACGTCAATGACAATCGCCCTGAAGTCATACTTACCTCCACGTCCGCTCCAGTCCAGGAGGATGCACTGCCTGGTACAGTAATCGCAGTCATCAGCGTGATGGACCAGGATTCAGGAGAAAACGGGCATGTAGACTGCGAGATTCCCCATCATGTACCATTTCAATTGCATTCCTCTTTTAAGAACTATTACACTTTAGTTACCTCGGACTTTTTGGACAGAGAGAAAGTTCCGGAATACAACATTACCCTCACTGCCAGAGATATGGGCTCTCCACCACTCTTTACCAGGAAGACCATTGTGGTCCAGGTGGCCGATGTGAACGACAATGCACCTGTTTTTAAGCAACCCTCTTACAATGTTTACTTGACGGAGAACAACCCTCCAGGTTTTTCAGTATTCACCATCTCAGCCCAGGATGCAGATGCAGGACAAAACTCGTACCTTTCCTATTCAGTTCTGGAAACTGACATTCAAGGGGCGCCAGCGTCCACATATGTGTCCATCAACTCAGACAACGGCAACATCTATGCATTGCGTTCTTTCGACCGAGAACAGCTTAAGAGTTTTCAACTAGTGATCCAAGCCAAGGATGCTGGACTTCCTCCACAGGTCAGCAACATGACATTGAATGTCTTTGTACTTGACCAGAACGACAATGCCCCAGTGATAGTATCCCCTCTACCGGAAAATGGCACGGCAGCCAACGAAATCATTCCCACATCAGCGGATGCAGGACACCTTGTGGCTAAAGTCACAGCCACGGATGTGGATGAGGGTCAGAATGCAAAGCTTTTGTATCAAATGCTCCAAGCCACAGACCCCACCCTGGTCAGCATCGCCCTCTTCACGGGGGAGGTCAGGATGATCCGCAGCCTAAGGGACGGAGACCCTACCACGCACAGACTGCTCATTTTGGTCAAGGACAGCGGTGAGCCGTCGCTCTCGGCCACAGCATCCATCATTCTGTCTGTTGTTGACAGCGAGCCTGAATTCAGTGACCTCCCGAAGCGCCCCGGGGACCATGCGCTCTATCTAATAGTGTCCTTAGGTGCAGTTTCCTTCACGTTTCTGGTGGCTATCATCGTCCTGGCTGCAATTAAGGGATACAGGCGCAGGCTTTCCAAATATGACAACTCCTGTTGTGGCTTCAGCCCCAAGGCCTCCACTACCGAGGACATGAAATCTAATTTAAATGTGCGCATATCTCCAGTTCCCAATGGAGCTGCAGATACTATGGATGTAAACAGCGGTGCCCAACTGGGTCAAAACTACTGCTACAAAATGTGCTTGACTCCAGAGTCATCTAAAAGTGACTTTATGTTTCTGAAGCCCTACAGCCCGACAGGGTCAGCTCTCCACATTAATAATAGCAGGACAGTAGAAAACAACACGTCGACCTGGAGTCCAGAGATCCAAAGGCTTAATGCAAACTACACTAATGCTTCCCTAAGAGAGTTTAAACAAGCTAATAAAGACTGGACGCTGTTAAAGAACCAACAGAATTTTGCCCACAAAAGTTCTGCAACAGTAGTGAAGACCCTACAGCGCAGAGTCATTCTGGACCACTCGGATATGTGCGCCTGCCCTGGAGCAACACAATACTGGACCTGGGGCAGCCATATGTGGGcagATTACAAGACATCATCTGAGGTTGGTGGTCTTACAGATCGCTGCTGGACCCCTCGGTTTGACTATCAGCATAACGTTTACATCCCTGGGACGCCGAGCTCATTTAGACCTGCCAGCCACGGAGATTTAGATATCTACAACTCATTTTCTACGTTtggaaagaagaagaaactaACGGCAAACCACGACCAGCACGAGGATACCATTATAACCAACGACCTTTTCAAATGAGTTTCAGGAAAACtgattttatgttgttttgtttgatttgtataATTTATTGGACTCTTGATGATTAGAGGAATCCTGATTATTCGTTTCCTAAA

Function

NR:

description
PREDICTED: protocadherin-10-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015602578.2 False 3121 mRNA 0.51 4 10690842 10695462
XM_022681042.1 True 3124 mRNA 0.51 4 10690842 10695462

Neighbor

gene id symbol gene type direction distance location
LOC103029337 fbxw11,LOC108277126,LOC105905987,LOC106603254,LOC107687420,LOC106568099,LOC107678030 coding upstream 36039 10633834 ~ 10654803 (+)
LOC103035292 trpc7a,LOC108437819,LOC107552051,LOC107677994,LOC108277129,LOC107720592,LOC105905985,LOC106603261 coding upstream 76373 10588031 ~ 10614469 (+)
LOC111194980 NA coding upstream 382149 10305916 ~ 10308693 (+)
LOC103033609 NA coding upstream 932358 9752333 ~ 9758484 (+)
LOC103030527 NA coding upstream 959851 9723554 ~ 9730991 (+)
LOC107197089 LOC107197089,LOC108437815 coding downstream 1097 10696559 ~ 10704898 (+)
LOC111195028 LOC108437795 coding downstream 11862 10707324 ~ 10709830 (+)
LOC111195025 NA coding downstream 15045 10710507 ~ 10713283 (+)
LOC111195103 NA coding downstream 18644 10714106 ~ 10716445 (+)
LOC107197092 NA coding downstream 21532 10716994 ~ 10719326 (+)
G174813 NA non-coding upstream 14841 10675716 ~ 10676001 (+)
G174812 NA non-coding upstream 19671 10670898 ~ 10671171 (+)
G174811 NA non-coding upstream 23662 10666950 ~ 10667180 (+)
G174810 NA non-coding upstream 25414 10665077 ~ 10665428 (+)
G174809 LOC103034963,LOC108437818,LOC108276546 non-coding upstream 27348 10661290 ~ 10663494 (+)
G174930 NA non-coding downstream 392257 11087719 ~ 11088839 (+)
LOC103022678 NA non-coding downstream 398255 11093717 ~ 11095900 (+)
G174944 NA non-coding downstream 442087 11137549 ~ 11137957 (+)
G174964 NA non-coding downstream 495019 11190481 ~ 11265122 (+)
G174983 NA non-coding downstream 705931 11401393 ~ 11401613 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other upstream 59077 10621028 ~ 10631765 (+)
rexo2 NA other upstream 1537709 9126708 ~ 9153133 (+)
LOC103038455 NA other upstream 2138232 8548884 ~ 8552610 (+)
acer3 acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427 other upstream 2524180 8149119 ~ 8166662 (+)
G174259 usp25 other upstream 2765402 7904595 ~ 7925440 (+)
G174874 LOC108437803 other downstream 136706 10832168 ~ 11019418 (+)
G174994 NA other downstream 734409 11429871 ~ 11436530 (+)
G175108 NA other downstream 1213410 11908872 ~ 11913456 (+)
LOC103027177 tmem261,LOC103027177 other downstream 1495894 12191356 ~ 12209449 (+)
rnft1 rnft1 other downstream 1828679 12524141 ~ 12540201 (+)

Expression


Co-expression Network