LOC103030874 (mtnr1bb,LOC103030874,LOC108423763,LOC107720651,LOC107693905,LOC108276622,LOC105890457)


Basic Information

Item Value
gene id LOC103030874
gene name mtnr1bb,LOC103030874,LOC108423763,LOC107720651,LOC107693905,LOC108276622,LOC105890457
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 31761901 ~ 31847969 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015605316.2
CCGGCCGAGCTCTCCGCGGCGATTTGCAACTCGGAATGGTCGGAGctacttaaaaaacaaaacacccaGAGGTTCCAGAGAGGAGCAGCGGAGCTATGGAGCACAGCGCGCCCCGCTCACAGCGGCCCCGAGCGGTGAACACGACCGCGCTGCCGCCGGAGCTGCGCAGTGAACGTTGAACCATAAGTCACCATAAGTCACCGTATCCACACTCTCGGTTGAATGAGTTGAGTGAGTCGCCTGAGTCCCCGAAGCCCCGGCATGTCCGAGGAGGACGTGGCCGTCGACAGGAACCGCACGGACCCGGGACACGTGGGGCGCGCGCTGGGCTCGAGCGCCAGACCCGCCTGGGCCATCGCCGTGCTGGCCAGCGTGCTGATCTTCACCACCGTGGTGGACGTGCTGGGCAACCTGCTGGTCATCATCTCCGTGTTCCGCAACCGAAAGCTGAGGAACGCAGGGAACGTCTTTGTGGTTAGCCTGGCCTTCGCTGACCTGGTGGTGGCCTTCTACCCGTACCCTCTGGTCCTGTACGCGCTTTTCCACGATGGCTGGTCCCTGGGGGACACGCAGTGCAAAGTCAGCGGTTTCCTGATGGGCCTGAGCGTGATCGGCTCTGTCTTCAACATCACGGGCATCGCCATCAACCGCTACTGCTACATCTGCCACAGCTTCGCCTACGGGCGCCTCTACAGCTTCCGCAACACGCTGCTGCTGGTGGCCCTGATCTGGATGCTGACGGTGCTGGCTATCCTGCCTAATTTCTTCGTGGGGTCGCTGAGCTACGACCCGCGGGTGTACTCGTGCACGTTCACGCAGACGGCCAGCAGCTCCTAcacagtggtggtggtggtggtgcactTCCTCGTGCCTATCGCCATAGTGACCTTCTGCTACATGCGCATCTGGGTGCTGGTCATCCAGGTGCGGCGGAAGGTGAAGAGCGAGGAGCGCTCGCGGGTGCGGCCCAGCGACTTGCGCAACTTCGTCACCATGTTCGTAGTGTTCGTACTGTTCGCCATCTGCTGGGCGCCGCTGAACTTGATCGGCCTGGTGGTGGCCATCAACCCCGAGGTGATTGCGCCGCGGGTGCCCGAGTGGCTGTTCGTGGTCAGCTACTTCATGGCCTACTTCAACAGCTGCCTCAACGCCATCATCTACGGGCTGCTCAACAGGAACTTCCGCAAGGAGTACAAGCGCATCGTCACGTCCGTGTGGATGCCGCGGCTCTTCGTAACTGAAACGTCCAGAGCGGCGACGGACGGCATGCGCAGCAAACCCTCACCAGCCATCAACAACAACGAGTGACTGCGACAAATGCACAATGCACTCGGCCAGTCACTGTTTCCTCACTTTTCTCTCTCGCCTCAAAGGGGAAACGGGTGGGGGGGATGGTTTGGGTTTTGGAGAGGGTGGGGTGGTGGGTTGGTATCTCCCATAGATATCATATACATAGACGCTGCATCGACTGACGCCATCTATTGGAGCTGGTGTGTCAACGTGACAgccatattggaggaggcaaCCCTGCACCcccagtgcattaatttacactgaggaaggtgcttataaaatttaata

Function

symbol description
mtnr1bb Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within rhythmic process and signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in caudal tuberal nucleus; dorsal caudal thalamic nucleus; periventricular grey zone; periventricular nucleus; and periventricular nucleus of caudal tuberculum. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human MTNR1B (melatonin receptor 1B).

NR:

description
melatonin receptor type 1B-B

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0048511 rhythmic process biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008502 melatonin receptor activity molecular_function

KEGG:

id description
K04286 MTNR1B; melatonin receptor type 1B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015605316.2 True 1581 mRNA 0.60 4 31761901 31847969

Neighbor

gene id symbol gene type direction distance location
LOC103041957 NA coding downstream 220426 31519076 ~ 31541475 (-)
LOC111195087 NA coding downstream 252680 31499084 ~ 31509221 (-)
timm10b timm10b coding downstream 265183 31493584 ~ 31496718 (-)
ilk ilk,LOC107718724,LOC107720653 coding downstream 271540 31466629 ~ 31490361 (-)
nhlrc3 nhlrc3,LOC107671632 coding downstream 297109 31458438 ~ 31464792 (-)
LOC103041448 kpna7,LOC103041448,LOC108423764,LOC108277302,LOC107693907,LOC107720648,LOC107556882 coding upstream 242720 32090689 ~ 32096800 (-)
LOC103041136 LOC108423765 coding upstream 252232 32100201 ~ 32106911 (-)
cct8 cct8,LOC107693911,LOC107701129 coding upstream 417028 32264997 ~ 32276777 (-)
LOC103038234 grik1,grik1a,LOC107701130,LOC107693913,LOC107718733,LOC107555187 coding upstream 495370 32343339 ~ 32428813 (-)
sod1 sod1,LOC106604042 coding upstream 803349 32651318 ~ 32658440 (-)
G180366 NA non-coding downstream 2463 31758098 ~ 31759438 (-)
G180373 NA non-coding downstream 18911 31742731 ~ 31742990 (-)
G180344 NA non-coding downstream 125353 31636347 ~ 31636548 (-)
G180342 NA non-coding downstream 179964 31581704 ~ 31581937 (-)
G180338 NA non-coding downstream 197033 31564597 ~ 31564868 (-)
G180454 chordc1 non-coding upstream 229395 32077364 ~ 32079824 (-)
G180543 NA non-coding upstream 357152 32205121 ~ 32208569 (-)
G180540 NA non-coding upstream 415605 32263574 ~ 32264739 (-)
G180562 NA non-coding upstream 474132 32322101 ~ 32326822 (-)
G180570 NA non-coding upstream 608577 32456546 ~ 32457411 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other downstream 804134 30946946 ~ 30957767 (-)
G179816 NA other downstream 2910796 28850690 ~ 28851105 (-)
G179578 LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586 other downstream 4195209 27561845 ~ 27566692 (-)
G179583 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 4236513 27524328 ~ 27525388 (-)
LOC103038646 zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012 other downstream 4237766 27523131 ~ 27524135 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other upstream 46233 31894202 ~ 32071924 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other upstream 392210 32240179 ~ 32262598 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other upstream 588356 32436325 ~ 32584343 (-)
LOC103033173 NA other upstream 1957271 33805240 ~ 33855632 (-)
LOC103042595 LOC106931471,LOC106940241,LOC106603438,LOC107659943,LOC101067200 other upstream 3585263 35433232 ~ 35470789 (-)

Expression


Co-expression Network