grin3a (grin3a,LOC107750958,LOC107710005,LOC107702562,LOC107554227,LOC104941214)


Basic Information

Item Value
gene id grin3a
gene name grin3a,LOC107750958,LOC107710005,LOC107702562,LOC107554227,LOC104941214
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 21932331 ~ 21964708 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015607071.2
GCCTCGCTCGCGCTGCcaaacatttgcacagtgcGGGTGCCACCGTGGGAGTTCATCAGGGGGACGCCCGCGCGCTCTTCCCGGACGGATTTCCGCGGCGCTTTGGATTACTCTTGTCCAGCTTTTCAGTCCGCTATTCTCGTGCGTAAAGAAATGTCCTGCGCGGCTGGGGAAGATGGATCGTGACGCGCGAGGACGGAGCTGAGCCGCGAGCGCGGACGCGGTGCAGTTTGGCGCTGATATTGTTTTTCtattactcttttttttgttgttgttctgttAGCTTTTTTTGCGCTTGAATCGGAGGATGCAAACGCTTTTTGTTGCGCGCTGCTGCGGCGTTTTGCACGCGGCTGTTTTTGCGCATTTGGCACACGGGCGAAATTAATGCTTAGAATAAAATTTAAACCGCAAAAaattatgtgattttttttttatcatttctgcAAAGAGATGCAAAACGACGCTGCTTTTGAGCACACGTGCAGCGCGCGCGCGGAAATACTCTCGGCAACTTTAGTTATTCTctgttattgtttttcttttttttctttttttggtctttctcttttttgcacGGAGGCGCACCGAGGCGAACGAACCGAGGTGCGGACGGCGGAGCTGCCGGTGTTTGGTTGTTGCTTTGCTCGCTTGGACCCCCGGCATCTTGGCCGCTGGGGACGTCGTGGTCGTTGTGGACGTCGTGGTCATCTTTTTTTCCCACCGCCCTCCCTTCCACATTTCTGGCTCGCGCTGAGCAATGACGGCTCGCGGGCTCGCGCTGCtggccctgctgctgctgttggtacCCTTCCTCGTGCTCCTTCTTGCCCCCGCCACCTGCCTCGCGCACCCGCAGCCGTGCCAGGTGCTCAAGCTCGTCGGTCACACGGTGCGTGTCGGAGCCTTGCACCTGCAGCCGCGCGCGCTCCGGCATCAtcaacagcagcaacaacagtatcagcaccagcagcagcatcagtcgCAGCATTCTGCCGTTCCCAGGAGGAAAACTTTGGACCACGACTGGGAGCGGGACTGGGACCGCGACTGGGAACGGGACTGGGACCGAGACCTGGAGTCGGGGGTGGTCGCCAGAAGCGTGAACGAGCTGGGCGCACGAGCCATCAGGGGTAGAGGCTCGAGCCACAAAGGCGCGAAAAGTAAGAACGCACTCAAACAAGTGGAGTCGGAGAGCGCGTTCCTGCCCCGGGACTCCATTCTGCTCGCCACCGAGACGCTCAACCGCCTGCCCGGCCTGCTGCCCTACAACCTGTCGCTGGAGATCGTGATGGCGGTGGAGGCTGGTCTCGGGGAGCTGCCGGCCTTCTCCTTCCCGTCCTCCTCCTCACCCTCCTCCACCCCGGCCTGCACCGACCCCGTCTCCTTCCTGCACAGCGTCTGCCACACGGTCATCGTCCAGGGGGTCTCTGCCATCATGGCGTTCCCTCAGAACAGGGACGAGTTGGTCAAGCTGGAGTTTATCTCGACGTCGCTTCAGATTCCGGTCGTCAGCGTCGTTCAGAGGGAGTTTAGGCGACAGAGTAAGAACGCCCTCCACTTCCAGATGGCCATGATGAACCCCCCAACTCCTCAGGCTGAACTCATCTTCTCCCTCCTGTCCATCAATAACTGGTACGACGTCAGTCTGCTGATGTGTCAAGAACTGAACGTCTCGCGCTTCGTCTTCCTGCTCCGCAACAACACCAAATTTCACCTGGGGTCCATGGTCAACATCTCCACCAACTCCAGCAACAAGGGGGACTTCCAGACCACCCTGCAGGGCCACCTGGACTCCATCAAGGACTCCACCTCCACCATCGTGACGTTCGGATGTGATATTCGGGACATAAAGAGGATCTTTACCACGGTGCTGAAGTTTGGGTTGATGCTGCCTGACTATCACTGGATTTTAGGCGATTCCCAGAACGTGGAGGAGTTAAGGACCGAGGGGCTGCCGATGGGTCTGCTCGCACACGGGCGAATGAGCCAGCCCTCCCTGGACCACTACGTCCAGGATGCTTTGGAGCTCGTGACCAGAGCCGTGGGGTCTGCTGCCATGGTCTCTCCGGAGCTGGCGCTCATCCCTGGCATCACAAACTGCATGGCTATAGAGGAGAAGAATCTCACCTCAGGAAAATATCTGTCCAGattCATGGCGAACACGTCGTTTGATGGACTTAGTGGCTACGTTCACGTTCGAGAGGAATCTACCGTTATCTCCGAAAGCCATCACTTCATCTGGAACCTGCAGCACGACCCCATCGGGAACCCCATGTGGACCCGGCTCGGGTCTTGGAAGCAGGGGAAGGTAGTGATGGACTACGGCGCCTGGTCCACCAACAGACAGTCCTACCCTGGAGGCGACTGGAGGCATTCCTCGAGGCTGCACTTGAGGGTTGTCACCCTGGTGGAGCATCCCTTTGTGTTCACCCGAGAAGTGGACGATGATGGGCAATGCCCTGCAGGGCAGCTTTGCCTGGATCCGCTAACGAACAATACGGCGCTACTGGAGAGCCTCTTCCAGGGCCTTCAAGGGGGAAACGACACCGTTCCAATGGAGTTTAAGAAGTGCTGCTACGGCTACTGCATTGACCTTCTGGAAAAGCTAGCCGAGGACATGGGCTTCGACTTCGACCTCTACATTGTCGGGGACGGAAAATACGGTGCCTACAAGAACGGCCGCTGGACCGGTCTAGTAGGCGACCTCATGAGCGGAGCGGCACATCTGGCGGTCACCTCCTTCAGCATCAACTCTGCTCGCAGCCAGGTGATCGACTTCACCAGCCCCTTCTTCTCCACCAGCTTGGGCATCCTGGTCAGGACTAGAGACACAGCTGCACCAATCGGAGCCTTTATGTGGCCCCTGCACTGGAGTATGTGGCTTGGAATATTCGTGTCCCTGCATGTGACCGCAGTGTTTCTGACCCTGTACGAGTGGAAGAGTCCTTTCGGGATGACGCCGAAGGGACGGAATAGGGATCGCGTCTTTTCCTTCTCCTCAGCTCTTAACGTTTGCTACGCCATCTTATTCGGAAGGACAGCCGCCATTAAGCCGCCAAAGTGCTGGACGGGCCGTTTTCTCATGAACCTCTGGGCTATATTCTGTCTGTTTTGTCTGTCTACATACACGGCCAATCTCGCTGCCGTAATGGTCGGGGAAAAAACTTACGAGCAGCTCTCAGGTATACACGATCCGAAGCTCCACCATCCATCACAGGGCTTCCGGTTCGGAACAGTGCGAGAGagcagtgctgaggattatgtgAAAAAAAGCTTCCCAGAGATGCACGAATACATGAGGCGCTATAATGTCCCTACGACCCCCGATGGAATAGACCACCTTAAAGCTGATCCTCAGAAACTGGACGCTTTTATCATGGACAAAGCCCTCTTAGACTATGAAGTGTCCATTGATGCTGACTGCAAAACTCTCACAGTGGGGAAGCCATTTGCAATTGAAGGCTACGGCATTGGTCTGAAACAGAATTCCCCTCTGACTTCAAACATCTCAGAGCTGGTCAGTCAGTATAAGTCAGATGGATTTATGGACATGCTTCATGATAAATGGTATAAAGTGGTGCCCTGTGGTAAAAGAAGTTTTGCAGtcacagagACGTTACAGATGGGGATCAAACACTTCTCAGGGTTATTTGTAATGCTCTGCGTGGGCGTGGCGCTGTCTCTGCTCACCACCATTGCTGAACACATCGTCCACCGCTGGGTGATCCCCAGAATGCAGAACAAGCCGCAGTACCAGTACTGGCTTCACACCAGTCAGAGATTACATCGAGCACTTAACCCGACCTTCAGCGAAGACAAATTAGCCACTGTGGCGAAACCAGAAAAAAGGTGCAACATCGGGAACAACCAGCAGCCGCTGTGGAGCACTTCAGAGAACTCCATCTGCACCCGGCGGCATCCGTCCAACCAGGAGGGGCAGCAGAACGACTTGGAGTGTTTACAGTGCAAAGAGCTCTCGCTCCCGCCCCCGCCGGTGAAGAGACAGCTTCCCCTGCAGGCCACGTCCAACGGGAAAACGGACCTGCTGGGCCTGGCGCGCAACCCCATAGTGCAGGAGCTGACGGACCTGGAGTCACAGATCCAGATCATCAAGCAGCAGCTGCAGATAGccatgaagaagaagaaagagctGGAGCAGTATCAGCAGACAAAAATGGCAAGTGAGCCCTAGAGCTTCCGGAGCTCTTTTTGTGGCCGGACTCTCGTGTGCACTTTTCTCGTGCAGCGCTCGGAGACTCGGACCTAATGGCGGATTATCGCAGATTCGCTTCCTGAGGGAGTGAAGCGGTCTCAGTGTGTACCTCTGCACATCTTTTTAAAAAGGCAGCGTTATTTTTCTCTATTGATTTCTTTGGAATTCACACTGGACTGACCAAATGCTGCTCTGAATATGTGGGAGAGGATGCTAATGGATAAGAGAgtcaaagggttaaaaaaaaggcCGATTTATACTTCTGCACCAAGTCAATCTGTGTAGTTGAGTTGCATTGGGCATCAATTGCACCAATAAAACCCTAGACTAGGGGTTGGCAATTAAGTTTtgccgcgggccagatattttccaagccattacgtggcaagccacaaaaaaaaaaaatctgttttggaaaatgaagtgtaatgggacgAAGCACTACAGACTAGAAGCACTACTGGGCTCTCCAGCCCAgtagggttgttgaacccaattgcagaacagctgacctcaaagcaggtaaacccaagaagaaaggaataaataaataaacacaccgctcctcacgcaggatcgaacccgtgtcttCAGGGtcatggtccaatacactatcacTGACCCAGCTAGTGAACTGAGACAAAATATAAGCCTTTATAAGGAGAAAGAgagcccaagaacaggcggaaaaacatgaacgggcggaaactaaagtcacaccgagtgcgacagagagagaggggaggaatgtaaacaaaagctcgccagagaagcattttatttattttttattttttcattatcgttcattatagttcaaacaacctcacgggccagatgttgcAAGCTCCTGCAGGCCACCTATTTTTATGTTGCCGACCCCTGCACTAGGCGAAGACGGCAAAGATGGCAAAGAATgaaatttttgagatgcacctgaaTTTCTTATCCTAGGAAAAACAAGTGCCAAAAAACCTTCAAAGAACTTTccttaatttagattttttcattatttctgaaCATATCAATCCTCCCTATTACATTAATGCAACACAGATTTGAAGCAGAAGCATAAATCGGCCCTCAGGAACCTGGATACGGCCAGCATCCCCCAGAGCTCTACTTTCACTGgtactgtagtgtgtgtttttgtgcggGACTGTCCGAGGGGGGAAGATGCTCTGTGTATCAAAGCGACAGGTGTTTATTTATGGTGTCACAGTGTGAAGTGTATGGTAGCACCTCCTGCATATTGATATAATGCGCTCCACCGTTTTATAGAAGAAAGCATGATTGCTGCCTCTCGGTTTGCGACGGGGGAGTCTTTACTGTCAACTGCTAAAGGGTTCCCGGCCTGTTCATTAAAAAAGCT

Function

symbol description
grin3a Predicted to enable ionotropic glutamate receptor activity. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Orthologous to human GRIN3A (glutamate ionotropic receptor NMDA type subunit 3A).

NR:

description
PREDICTED: glutamate receptor ionotropic, NMDA 3A

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0007165 signal transduction biological_process
GO:0044425 obsolete membrane part cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05213 GRIN3A; glutamate receptor ionotropic, NMDA 3A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015607071.2 True 5588 mRNA 0.53 9 21932331 21964708

Neighbor

gene id symbol gene type direction distance location
musk musk coding upstream 563057 21326212 ~ 21369274 (+)
cst8 NA coding upstream 636482 21285246 ~ 21295849 (+)
LOC103023250 NA coding upstream 673744 21203262 ~ 21258587 (+)
LOC103022731 cntfr,LOC107554853,LOC107756542,LOC107738850,LOC107554231 coding upstream 754873 20842037 ~ 21177458 (+)
galt galt,LOC107653127,LOC107667272 coding upstream 1353546 20428762 ~ 20578785 (+)
LOC103047607 LOC103047607 coding downstream 358012 22322720 ~ 22334543 (+)
sec31a sec31a coding downstream 456654 22421362 ~ 22453611 (+)
tmem150c tmem150c,LOC107558260 coding downstream 503729 22468437 ~ 22476305 (+)
LOC103022635 mat2al,LOC108440739,LOC108276530,LOC107732036,LOC107653488,LOC107573852,LOC102202437 coding downstream 545180 22509888 ~ 22515585 (+)
LOC111195066 NA coding downstream 554711 22519419 ~ 22528083 (+)
G178233 NA non-coding upstream 232698 21699433 ~ 21699633 (+)
G178202 NA non-coding upstream 385363 21540577 ~ 21546968 (+)
G178105 NA non-coding upstream 667347 21237139 ~ 21264984 (+)
G178108 NA non-coding upstream 973848 20931781 ~ 20958483 (+)
G178097 NA non-coding upstream 1210940 20721073 ~ 20721391 (+)
G178254 NA non-coding downstream 8006 21972714 ~ 21973034 (+)
G178278 NA non-coding downstream 134611 22099319 ~ 22099558 (+)
G178280 NA non-coding downstream 135332 22100040 ~ 22101283 (+)
G178282 NA non-coding downstream 138041 22102749 ~ 22103046 (+)
G178289 NA non-coding downstream 348462 22313170 ~ 22314294 (+)
ier3ip1 ier3ip1,LOC106633120 other upstream 1533166 20396377 ~ 20399165 (+)
G177950 NA other upstream 1792767 20138822 ~ 20139564 (+)
LOC103043854 NA other upstream 1835620 20089238 ~ 20096711 (+)
LOC103042206 LOC108428882 other upstream 2156540 19750942 ~ 19775791 (+)
LOC111194983 NA other upstream 2209771 19720301 ~ 19722560 (+)
LOC103046694 LOC108440723,LOC108277161 other downstream 162413 22127121 ~ 22315307 (+)
LOC103025565 scd5 other downstream 491611 22456319 ~ 22465729 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other downstream 522115 22486823 ~ 22491503 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other downstream 528732 22493440 ~ 22502159 (+)
G178352 NA other downstream 579932 22544640 ~ 22546130 (+)

Expression


Co-expression Network