LOC103022111 (LOC103022111)


Basic Information

Item Value
gene id LOC103022111
gene name LOC103022111
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 14918859 ~ 14921856 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015608410.2
TCAGTTTTGTGTTGGGTATTTAGTCCAGGCTGCTGCTCTGGCCTTTCAGACCTGTCTTCGGAGGCGCAGCCATGAAGGTATCAAAAATGAGCTTGTCCATGCCTGTTGCCTTATCCTGCATCTTAATGCTGCCAACTCTTCTGCAGGCAGTATCTCTCACAAAGCTCCCCGATAAAGCTGAAGTATCTGGTTCATCTGGAAACGCAGTAAGCATTGATGCTGCCCAAGCCCACAACTTCCTTACCCACTCACGGCCCCGGCGCGAGGCTGACCCCAAATGGTACCGAAAAGACCCTGACTTCCAGTCTTACTACCGTTACTACAGCAGCATTGGGCACATGGAGGGGCTGTACGAGGTTGACAAAATCAGAATGCTCTACCAGCAAATGCGCCACCTAGAGAACACCTACGGTCCAGATGCCTCCAAATACCAGACCATTCTTGGGCTGCATCTTCCAAAAAACACGCCCCCACCCCCAACAACCAAGCCCACACCACCACCCACCACCCCACCCCCAGCCCTGCCACCACTCTCACAGTCTGATGTCACCTACCTTTGCAACCCCAAAGACCCACTCTGTAAGCCTAGAATAGTGTACCTGCCCACAGGGGCCGTCCCTGTTCTCTGTGATCCACGGTACAACCCAGCATGTAAACTAACTGCAGCTAAAGAGCCCCCTCCTGCCCCTGCGGAGCCAGCTGCCCCTGCACCCCCACCTGCTAAAAAGTCTAATGTCCCCCCAGCCCCACCTCCACTCGTGTTTAAAGAAATGGAGTATGACTGTGATCCCTACTGGGATCCAGACTGCTTAATTGACAACCCACCAAGGCCTGTAAAAGTTAAAGGCCCTGTGTTAGCAATGCCCCCGAAAACACCGGCTGCTCAGAAGGAGGGAAAagtggaggaagaagaagaggaagaagaggccAGTAAAGAGGAAAGTAAGGGCACCGCGGTGGGGCCCAATCTGTACTACGATCCCTATGATTACCGAAGAGATCTCTACGATCCATACCATTACGCTAATCCACCGGCAAATCCCCAGTAGCATTTTAACATTACCAAGAGAGTTGTTTTTTGTACGTTAATTTCCAGACAACAAAAGCCacaaattgtttaaaaacactgtttttacattatatgAGCATTTTATTATGTATAGACCAAAAGGTTCTTAccattttgaagaaaaaaaaacactataaataaacaataaaagtcGTATGCctctca

Function

NR:

description
leucine-rich repeat extensin-like protein 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015608410.2 True 1234 mRNA 0.49 5 14918859 14921856

Neighbor

gene id symbol gene type direction distance location
LOC111195050 NA coding upstream 189795 14722983 ~ 14729064 (+)
uvrag uvrag,LOC108413435,LOC108411119 coding upstream 412855 14356296 ~ 14506004 (+)
dgat2 dgat2,LOC107746984 coding upstream 566671 14340408 ~ 14352188 (+)
mogat2 mogat2 coding upstream 587300 14317405 ~ 14331559 (+)
LOC103043274 NA coding upstream 637130 14263394 ~ 14281729 (+)
trnal-uag_3 NA coding downstream 5472 14927328 ~ 14927409 (+)
LOC103024204 NA coding downstream 560203 15482059 ~ 15487211 (+)
LOC103024827 NA coding downstream 575623 15497479 ~ 15501315 (+)
LOC111195055 NA coding downstream 950396 15872252 ~ 15880621 (+)
LOC103046796 atp8b5b,LOC108427255,LOC108277118,LOC107713374,LOC107686462,LOC107744118 coding downstream 1021774 15943630 ~ 15985372 (+)
G176258 NA non-coding upstream 1698 14839510 ~ 14917161 (+)
G176216 NA non-coding upstream 248181 14670284 ~ 14670678 (+)
G176010 NA non-coding upstream 382312 14536268 ~ 14536547 (+)
G176000 NA non-coding upstream 630585 14285302 ~ 14288274 (+)
G175999 NA non-coding upstream 631886 14284227 ~ 14286973 (+)
G176372 NA non-coding downstream 138773 15060629 ~ 15064133 (+)
G176383 NA non-coding downstream 155284 15077140 ~ 15077416 (+)
G176384 NA non-coding downstream 155862 15077718 ~ 15078159 (+)
G176394 LOC108427250,LOC107744134,LOC563710,LOC107720650,LOC107687808,LOC107678044,LOC107560524 non-coding downstream 179621 15101477 ~ 15124591 (+)
G176426 NA non-coding downstream 340340 15262196 ~ 15275158 (+)
LOC103039555 LOC108415819 other upstream 849497 13951405 ~ 14069362 (+)
LOC103038733 bcl7b other upstream 1029815 13798639 ~ 13889044 (+)
prdm15 LOC108413920,LOC106511912 other upstream 1050004 13847262 ~ 13868855 (+)
G175900 NA other upstream 1233296 13679359 ~ 13685563 (+)
LOC111195048 fgf13b,LOC108444526,LOC107555168,LOC107718748,LOC107548853,LOC107720625,LOC107693932 other upstream 1500443 13353768 ~ 13418416 (+)
LOC103047397 unc13b,LOC107686461,LOC107688005 other downstream 872408 15794264 ~ 15973657 (+)
fam136a fam136a,LOC102792467 other downstream 1899079 16820935 ~ 16824328 (+)
G176882 inpp5j other downstream 2120979 17042835 ~ 17046989 (+)
xpo7 xpo7,LOC107678024,LOC107586117 other downstream 3216856 18138712 ~ 18174518 (+)
G177219 NA other downstream 3302417 18224273 ~ 18226133 (+)

Expression


Co-expression Network