tbl2 (tbl2,LOC107734476,LOC107691705,LOC107728824,LOC107686137)


Basic Information

Item Value
gene id tbl2
gene name tbl2,LOC107734476,LOC107691705,LOC107728824,LOC107686137
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 13870329 ~ 13875514 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015608419.2
atgaacaGGGCGAGCACAGCTCACCTCCTCCAGGCCGCCAGAGGGCGGGAGGGATCAGTATTTTCCTGAAAGCTGAGGAAACCCCTGAAGAAAACTCTGACAAGTCAGCACGGTCCACGACTGCAGCGCGAATAGTTATTAATACAGATAAATATAGATCAATTTCTTTATACACGCGCCCGATATTAATACGCTTAGTCAGCACGCACAGAGgcggagagggagagagagatacagtagTTTGTGTATGTACATATGcatgtgttttgtgtgagtgtgtgtatgtctgtgagattgtatttgtgtgtatgtgatggAGTTCTCAGCTGTGCTCGTGCTCTCCCTGTTTCTCGGGGCTCTTCTCGTGCTGATCTTTGCTGCAGTTGCGAAGAGAAACGGAACACCTGAGCAACCTGAGCCAGAGCAGGTAAAACCCACAGCTGAAGAGAGTTCAGCGAAAGCCTCTTCTAAgaagcagaaacagcagcagcgaCCACGGAAAGAAAAACCCCAGCAGCACATTTTCACCCACACTCTTCTGGCATCTTCTCTAAAGAACCACAGTGGGAATATAACATGCCTAGATTTTAGCAGCAATGGTAAATATCTGGCCTCCTGCTCAGACGACCGTAGCATCCGGATCTGGAGCACCAAGGACTTCCTGGACCGTGACCATAAATGTCTGCGAGCGAATGTAGAGTTTGACCATGCTACACTCGTCCGCTTCAGCCCAGATTCCCGAGCTTTCATCACATGGCTGGCCAACGCAGAGACCATTCGGATCTTCAAGATGACTAAGAAGGAGGACGGCACGTTCAGTTTTAAAGCTGCTCCAGAGGACTTTCCccagaggcacaaaggagtgatcATCAACATCGGCATAGCAGCAACAGGCAAGTTCATCATGACTGCTTCTGAGGACACCACTATCCTTATCTGGGACCTGAAGGGAGAAGTTTTAGCATCTATCAACACCAACCAGATGACTAACTCATACACAGCAGTCTCTCCCTGTGGCAGGTTTGTGGCATCCTGTGGTTTCACGCCGGATGTAAAAGTGTGGGAGGTGTGTTTTGCGAAGACAGGCGAGTTTAAAGAGGTCACGCGAGCTTTTGACCTGAAAGGACACTCGGCTGGAGTTTATTCCTTTGACTTTTCCAATGATTCACGCAGGATGGTGACCGTGTCTAAAGATGGCACCTGGAAGCTGTGGGACACTGATGTGGAGTATAAGAAGAAGCAGGACCCCTACTTGCTCCGGACGGTACCGTGCCGAGTTTCAGAGGGCAGCCGGATTTCTCTGTCTCCAGACGGTCGCGCCGTGGCCGTGTCTAATGGACGTGACATAGCCATGTACAGCGCCACCTCTGGTGAGCTGGAGGAGGAGTACCTCTATGTCCACAGTGAGGACATCACTGACCTTAAATTTGACATTAACAATCGATTCCTGATTAGCACCGGCGATAGAGCCATCCGCGTCTTCCACAATGTCACCGGTTACCGCGCTGCAATCCAGGACATGCAGGCACTGCTGAAGAAAGCCTCCAACGACGGGGTGAAGCAGAGGCTACAGCAGCAGCTGCTGGATGCCCAGAATGCCTTGGACATGGTGCTGAGTGGAAAAAAGAGCTAAACAGATTAAAGGTTACATCTGTTCCTCACTTGTTGCCTCTGAACACTGTCGGGTTTGTGTTTgcagttgttttgttttggcatgttggttttaataaataaattaaaagaaa

Function

symbol description
tbl2 Is expressed in yolk syncytial layer. Orthologous to human TBL2 (transducin beta like 2).

NR:

description
PREDICTED: transducin beta-like protein 2

GO: NA

KEGG:

id description
K23325 TBL2; transducin beta-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015608419.2 True 1745 mRNA 0.49 7 13870329 13875514

Neighbor

gene id symbol gene type direction distance location
c2cd2 c2cd2,LOC107691665,LOC107578675,LOC107686140 coding upstream 29396 13815126 ~ 13840933 (+)
ska2 NA coding upstream 94499 13766871 ~ 13775830 (+)
LOC103037129 NA coding upstream 276061 13586657 ~ 13594268 (+)
LOC103033364 NA coding upstream 284980 13574468 ~ 13585349 (+)
LOC103021665 NA coding upstream 608097 13261088 ~ 13262232 (+)
LOC111195113 NA coding downstream 38414 13913928 ~ 13920617 (+)
kctd7 kctd7,LOC108415927,LOC107588867,LOC107686134,LOC106603469 coding downstream 195700 14071214 ~ 14077236 (+)
rabgef1 rabgef1,LOC107734461,LOC107577469,LOC107728875 coding downstream 206960 14082474 ~ 14098693 (+)
trim37 trim37,LOC107691657,LOC107577452 coding downstream 226435 14101949 ~ 14130690 (+)
atg101 atg101,LOC107751375,LOC107686213,LOC107589731,LOC107691654,LOC107577413 coding downstream 368698 14244212 ~ 14247659 (+)
G175919 NA non-coding upstream 106166 13761650 ~ 13764163 (+)
G175918 NA non-coding upstream 111363 13756275 ~ 13758966 (+)
G175912 NA non-coding upstream 121679 13747274 ~ 13748650 (+)
G175906 NA non-coding upstream 143368 13717888 ~ 13726961 (+)
G175901 NA non-coding upstream 161847 13701539 ~ 13708482 (+)
LOC111195049 NA non-coding downstream 29894 13905408 ~ 13907384 (+)
G175946 NA non-coding downstream 45016 13920530 ~ 13929117 (+)
LOC111194981 NA non-coding downstream 50726 13926240 ~ 13929117 (+)
G175966 NA non-coding downstream 238580 14114094 ~ 14171071 (+)
LOC103042124 NA non-coding downstream 266653 14142167 ~ 14243143 (+)
prdm15 LOC108413920,LOC106511912 other upstream 1474 13847262 ~ 13868855 (+)
G175900 NA other upstream 184766 13679359 ~ 13685563 (+)
LOC111195048 fgf13b,LOC108444526,LOC107555168,LOC107718748,LOC107548853,LOC107720625,LOC107693932 other upstream 451913 13353768 ~ 13418416 (+)
LOC103028411 LOC108444524,LOC107720618,LOC559907,LOC108276802 other upstream 541311 13293298 ~ 13329018 (+)
G175379 cltc,LOC108250671,LOC106581108,LOC107693955,LOC106612978 other upstream 1125276 12739503 ~ 12745053 (+)
LOC103039555 LOC108415819 other downstream 75891 13951405 ~ 14069362 (+)
LOC103047397 unc13b,LOC107686461,LOC107688005 other downstream 1918750 15794264 ~ 15973657 (+)
fam136a fam136a,LOC102792467 other downstream 2945421 16820935 ~ 16824328 (+)
G176882 inpp5j other downstream 3167321 17042835 ~ 17046989 (+)
xpo7 xpo7,LOC107678024,LOC107586117 other downstream 4263198 18138712 ~ 18174518 (+)

Expression


Co-expression Network