LOC111194965 (mrps24)


Basic Information

Item Value
gene id LOC111194965
gene name mrps24
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 1959085 ~ 1961614 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680680.1
GAGGAGCCGCTAGGGGGCGGCAGTGAAGCTCCGCTGCGGTACAGGAAGCGGGTGATGGTCGCTGGTGGTCATGTGCAGCAGCCATGGCGGCGTCCTTCAGCAGCCAGAGGAGATTATTAACAACTCTGTGTAGTCAGTTGAATGGTGCACTATGGCTGAACTCTGGAGTGAGGAGCATCCACTCTACAGCAGTCTGTAATAAGAATCGTGCTGCTCGTATCCGTGTGGGTAAAGGGGACCGGCCGATGACGTATGAGGAGGCTCTGCCCCCCCACCAGATCGCTCACAGGAAGGGATGGCTCTCCCATCATACAAgtaATCTGAATGGAGAGCACGGCACTGCAGATCGAACAGTAGAAGACGCCTTCATCCGACGCTTCATATACGGCACGTTTCACAGGTGCCTGGCGAATGAACTGGTTATTAAGCGCAGAGGAAACATGCTGATCATCTCTGCTTTAATGTTCCAGAAGATGCCTCCTCGtaaatattatttctttattggctacactgaggaactgcTCTCGCACTTCTATAAATGTCCTGTGAAGATGGAGATCCAGACGGTGGAGGAGAAAGTGGTGTATAAATATCTCTAACCTCTCGTGTGTTTGGTTAATGTTTTGTAATGGAGGGAGGATCGGAactctgtgtttctttttcaGTTCAAACTGTTTGTGTTATAAATATCATGTGAATATAaaggtttaaaatattaaa

Function

symbol description
mrps24 Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial translation. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Orthologous to human MRPS24 (mitochondrial ribosomal protein S24).

NR:

description
28S ribosomal protein S24, mitochondrial

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005840 ribosome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K17403 MRPS24; small subunit ribosomal protein S24

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680680.1 True 720 mRNA 0.48 4 1959085 1961614

Neighbor

gene id symbol gene type direction distance location
LOC103042387 LOC108410540 coding upstream 192160 1760477 ~ 1766925 (+)
dusp26 dusp26,LOC107720817 coding upstream 205328 1747521 ~ 1753757 (+)
LOC103043725 bcl7a,LOC108410533,LOC107704131,LOC107706784,LOC107722340,LOC107554537 coding upstream 240138 1713634 ~ 1718947 (+)
LOC103044833 LOC108410534,LOC108276727 coding upstream 246160 1709405 ~ 1712925 (+)
denr denr,LOC107722339,LOC107706783 coding upstream 249902 1704504 ~ 1709183 (+)
polm polm coding downstream 12631 1974245 ~ 1981134 (+)
LOC103032544 NA coding downstream 29151 1990765 ~ 1993332 (+)
ddx56 ddx56 coding downstream 48046 2009660 ~ 2018739 (+)
ash2l ash2l,LOC107704134 coding downstream 94751 2056365 ~ 2073303 (+)
mier3 mier3,mier3a,LOC108441071,LOC108277354,LOC107568605,LOC107665797 coding downstream 132948 2094562 ~ 2103944 (+)
G172741 NA non-coding upstream 47360 1904782 ~ 1911725 (+)
G172737 NA non-coding upstream 69489 1888542 ~ 1889596 (+)
G172736 NA non-coding upstream 70621 1885208 ~ 1888464 (+)
G172733 NA non-coding upstream 77050 1865101 ~ 1882035 (+)
G172735 NA non-coding upstream 83938 1874801 ~ 1875147 (+)
G172756 NA non-coding downstream 1107 1962721 ~ 1964604 (+)
G172767 NA non-coding downstream 26377 1987991 ~ 2022820 (+)
G172763 NA non-coding downstream 37775 1999389 ~ 2004425 (+)
G172782 NA non-coding downstream 81111 2042725 ~ 2043939 (+)
G172788 NA non-coding downstream 99484 2061098 ~ 2106334 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other upstream 103331 1853282 ~ 1855754 (+)
LOC103041266 NA other upstream 108869 1839351 ~ 1850216 (+)
G172552 NA other upstream 330280 1626799 ~ 1628805 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other upstream 414129 1383495 ~ 1544956 (+)
G172517 NA other upstream 416934 1507320 ~ 1542151 (+)
G172770 h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302 other downstream 33094 1994708 ~ 1997362 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other downstream 756995 2718609 ~ 2726076 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other downstream 1503519 3465133 ~ 3739736 (+)
G173094 NA other downstream 1778688 3740302 ~ 3743205 (+)
G173111 LOC108435134,LOC108277016 other downstream 1947328 3908942 ~ 3931991 (+)

Expression


Co-expression Network