LOC111194975


Basic Information

Item Value
gene id LOC111194975
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 9666041 ~ 9667743 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680692.1
ATGGATGACTTAGACTACAGACAAAACTCCACAGTTCAGTACTGCTTTCCTGACAGCAACTTGTCTTGCAAACAGGAGGTCCGGACGGGCCCGGCGTATATGtctttgttcatttttctctcatgtatatctgtgtgtactgtgtttttaaacctgCTGGTGAttatctccatctctcacttcaAGCAGCTCCACACTCCAACCAACCTGCTcatcctctctctgtctgtggcAGATCTTCTCGTGGGACTAGTTGTTATGCCTATGAATATAATACAATTGATGGACTCCTGCTGGTATTTTGGAAAAATAGCGTGCTCTGTGTATCCTCTGATCAGTTTCGTCCCAATGGCGGCATCTCTCTGCAGCCTGATTTTGATCGCAATTGAACGGTACATTGCTGTTTGTGATCCTCTGCTTTATTCCACTAGAATCACAGTTTGTAGAACCACATTAGTTATAATTCTTGGCTGGTCTTTATGTCTGTTTTATATCATCATATATTTGTACATTAATAACCACCTGGTTCCATCTCAGATCGTCACTAGTTGTAATGGGGAGTGTGTAATGAGCCTCAAACATTTCTGGGTGATTGTTGACCTGGTGGTTTCATTTATTGCCCCTTGCTGTATTATCCTGATCTTATATTCAATCATTTTCCAAGTGGCAAGACGTCAAGCTAAAGCTGTTAAAGCCATGAAAAAGGGAACTTCATGTAAGCACAGGAGTAAAGCTTCAGGTTCATCCCAAACAAAAGCTGCTAAAAAATTAGgcactgtaatatttttttatctggcTCTCTGGATACCATATTATTTAAGTTCTCTGTCAGTTGAAAGCTTGACATCTTCCTCAGTATTTTTGACTGTGTTTGGGTGGCTACAATTTATAAACTCCTCTGTGAATCCACTAATATATGCCATTTTCTACTCATGGTTCAGAGCATCAGTTAAGTATATTGTAACATGTCGAATATTTGAACCTTCATCTTCAAGGTCTAATTTGTTACCAGATCACTCttaattttgataaaaacaatatCAAATTCCTATTTAACCAACCTGATCATGAATGTCTGGGAAAGTGAATGTATTAGGTTTTTGACtttgaaatgttatttttgaaATGATATAATATTATTGGGTTTTGTGGGTTCAATTTTACTCTGGCAACTAAATCTGTGAGGAATTTGGGGTGTTCTCCTTATTCCTGCATGCATAACCTCCTACCTTGTAAATATACACATGATACTTGTAATTTGAAATTATGATATTGGCTAATTGTGAGTGCGTTTGGTACCCTGCATTTGACTGGAACCCTGAACAGGGGTATTCCTGCTCTAATTCAGAATAGACTACTGTAGACGTACATCTGTGACCCTCAACAGGAAAAATCAAATacgttttattaaattaaaaacgaCATTATATGTAGTATAAATCAATTACAAAGCTATGTTGACAAAGAATGACGTATGGGAATTGTTATGTGTAATGAAGATTTACAAAATATATCATCAAAGTATATCATTTCTGCCctgtatacatatttaaatcatTCATAGTAAAACCTAAACACTGTCAATGTCCCTCAAATGATGTTGTTTACACTACAATGAATAAGCAGagactgcttgaattttctgttttcagtgcaaaACCTCAGGACCTAGTACAGTTTTATCATGTGTCTaatgtaaatgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680692.1 True 1703 mRNA 0.37 1 9666041 9667743

Neighbor

gene id symbol gene type direction distance location
LOC111194974 NA coding upstream 3980 9660924 ~ 9662061 (+)
LOC103032234 NA coding upstream 19118 9645110 ~ 9646923 (+)
LOC111195020 NA coding upstream 23550 9641027 ~ 9642491 (+)
LOC111194972 NA coding upstream 38256 9626444 ~ 9627785 (+)
LOC103036148 gramd1ba,LOC107679517,LOC107730968,LOC108433258 coding upstream 167849 9354908 ~ 9498192 (+)
LOC111194976 NA coding downstream 6540 9674283 ~ 9675427 (+)
LOC107197516 NA coding downstream 12642 9680385 ~ 9681455 (+)
LOC111195100 NA coding downstream 16161 9683904 ~ 9685135 (+)
LOC111194977 NA coding downstream 23559 9691302 ~ 9692759 (+)
LOC103034239 NA coding downstream 30640 9698383 ~ 9699826 (+)
G174609 NA non-coding upstream 292093 9371441 ~ 9373948 (+)
G174582 NA non-coding upstream 344698 9319390 ~ 9321343 (+)
G174583 NA non-coding upstream 351903 9313904 ~ 9314138 (+)
LOC111195017 NA non-coding upstream 524743 9140149 ~ 9141298 (+)
G174559 NA non-coding upstream 571945 9092441 ~ 9094096 (+)
LOC111195021 NA non-coding downstream 92809 9760552 ~ 9762446 (+)
G174719 NA non-coding downstream 152368 9820111 ~ 9820433 (+)
G174738 NA non-coding downstream 554967 10222710 ~ 10223083 (+)
G174783 NA non-coding downstream 643450 10311193 ~ 10311590 (+)
G174788 NA non-coding downstream 668163 10335906 ~ 10336194 (+)
rexo2 NA other upstream 512908 9126708 ~ 9153133 (+)
LOC103038455 NA other upstream 1113431 8548884 ~ 8552610 (+)
acer3 acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427 other upstream 1499379 8149119 ~ 8166662 (+)
G174259 usp25 other upstream 1740601 7904595 ~ 7925440 (+)
LOC103041160 NA other upstream 3124662 6536327 ~ 6541379 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other downstream 953285 10621028 ~ 10631765 (+)
G174874 LOC108437803 other downstream 1164425 10832168 ~ 11019418 (+)
G174994 NA other downstream 1762128 11429871 ~ 11436530 (+)
G175108 NA other downstream 2241129 11908872 ~ 11913456 (+)
LOC103027177 tmem261,LOC103027177 other downstream 2523613 12191356 ~ 12209449 (+)

Expression


Co-expression Network