LOC111194977


Basic Information

Item Value
gene id LOC111194977
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 9691302 ~ 9692759 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680694.1
AGCATTTCTGAACATCAGGCTGCAACTGTCCCATTTGGCAGATATGCAGCTAATAGAGATTAATAATACAGATTTTAAGCATGATATAGATGTTCTGTTCTGCTTTCCTAACCACAACTTCTCTTGCAGAAAGGAGGTCCGGACAGGCActggatatatatttttgttcactTTTCTCTcatgtatatctgtgtgtactGTGATTTTGAACTTGTTGGTGAttatctccatctctcacttcaAGCAGCTCCACACTCCAACCAACCTGCTCATCCTCTCTCTGGCTGCGGCAGATCTTCTCGTGGGATTGTTTGTTATGCCTGTGGATGTAATGCAGTTAATGGATTCCTGCTGGTATCTTGGGAAGGTGGCATGCTGTATTCTTGATTTGATCAATTATATCTCAATGTCCGGATCTCTCTGTAGTCTGACTTTCATTGCAATTGATCGGTACATTGCTGTCTGTGACCCTCTGCTTTATTCTACTAGAGTCACAGTTTGTAAAACATCTCTGTTCCTAATTCTAGGTTGGTCTTTAGGTGCATTGTATGCTATCCTGTTTTCCTACTTTAATGATCATCTTCTTCCCTCTCAGATGTCCAGTAGCTGTTATGGGGAGTGTGTAATGGTAATGAAGTACTCCTGGTTGATTGTTGACATTGTAGTCTCATTTATAACCCCTTGTTCTGTCATACTTGTTacgtattttattatttttaaagtggcaAGACGTCAGGCTAAAGCTGTAAAAGCTGTAAGAAATGGTGCCACAAACAATCATGGACCACAAAGTTCAAGTTCTTCTGAAACCAAAGCTGCAAAAAAATTAGGCacagtgatttttgtttttattgcttgTTGGATACCATTTTATTTAGCTTCTTTGACACTTGAAAATGTTACATCAGCATCAATTATTTGGACTGTATTTGTTTGGCTGCTACAAATAAACTCCTCTATGAACCCATTAATATATGCCATTTTCTACTCATGGTTCAGAACCTCTTGTAAGTTTATTGTAACTTgtagaatttttaaaagttcATCTTCGAGATTTAATTTGTTTCCTGATCCTTTTTAATGTCAGGTTAACCACAGTGATGGGCAGGTTTTCTTATGTCTTTTTCTGATATAACCTTTTTTTCTGATAAATgcataacattataaaaatatgtttgtattattcaaatatttaaatccTGAAGAGAATATGAAACAatgataaatgtataaattggTCTTAACATTTgacttattttaaatgttgcaTTTTAAGTGAGTTATAAAAGTGTGATAGCAATACTCAACTGATTTTAACAACACTGTATAAATCATGCAGCATCACTATTTAACCTCAGGTGCCCCCTATGAATGAAGGAGACATCAGCCTTTACATTAACCTCTTCTTAATCCATAATAGATTATGCtgaatacaattttaaataaagattgtCTTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680694.1 True 1458 mRNA 0.35 1 9691302 9692759

Neighbor

gene id symbol gene type direction distance location
LOC111195100 NA coding upstream 6167 9683904 ~ 9685135 (+)
LOC107197516 NA coding upstream 9847 9680385 ~ 9681455 (+)
LOC111194976 NA coding upstream 15875 9674283 ~ 9675427 (+)
LOC111194975 NA coding upstream 23559 9666041 ~ 9667743 (+)
LOC111194974 NA coding upstream 29241 9660924 ~ 9662061 (+)
LOC103034239 NA coding downstream 5624 9698383 ~ 9699826 (+)
LOC103030527 NA coding downstream 30795 9723554 ~ 9730991 (+)
LOC103033609 NA coding downstream 59574 9752333 ~ 9758484 (+)
LOC111194980 NA coding downstream 613157 10305916 ~ 10308693 (+)
LOC103035292 trpc7a,LOC108437819,LOC107552051,LOC107677994,LOC108277129,LOC107720592,LOC105905985,LOC106603261 coding downstream 895272 10588031 ~ 10614469 (+)
G174609 NA non-coding upstream 317354 9371441 ~ 9373948 (+)
G174582 NA non-coding upstream 369959 9319390 ~ 9321343 (+)
G174583 NA non-coding upstream 377164 9313904 ~ 9314138 (+)
LOC111195017 NA non-coding upstream 550004 9140149 ~ 9141298 (+)
G174559 NA non-coding upstream 597206 9092441 ~ 9094096 (+)
LOC111195021 NA non-coding downstream 67793 9760552 ~ 9762446 (+)
G174719 NA non-coding downstream 127352 9820111 ~ 9820433 (+)
G174738 NA non-coding downstream 529951 10222710 ~ 10223083 (+)
G174783 NA non-coding downstream 618434 10311193 ~ 10311590 (+)
G174788 NA non-coding downstream 643147 10335906 ~ 10336194 (+)
rexo2 NA other upstream 538169 9126708 ~ 9153133 (+)
LOC103038455 NA other upstream 1138692 8548884 ~ 8552610 (+)
acer3 acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427 other upstream 1524640 8149119 ~ 8166662 (+)
G174259 usp25 other upstream 1765862 7904595 ~ 7925440 (+)
LOC103041160 NA other upstream 3149923 6536327 ~ 6541379 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other downstream 928269 10621028 ~ 10631765 (+)
G174874 LOC108437803 other downstream 1139409 10832168 ~ 11019418 (+)
G174994 NA other downstream 1737112 11429871 ~ 11436530 (+)
G175108 NA other downstream 2216113 11908872 ~ 11913456 (+)
LOC103027177 tmem261,LOC103027177 other downstream 2498597 12191356 ~ 12209449 (+)

Expression


Co-expression Network