LOC103045069 (bmp1,LOC108440159,LOC105014870,LOC107710833,LOC107661342)


Basic Information

Item Value
gene id LOC103045069
gene name bmp1,LOC108440159,LOC105014870,LOC107710833,LOC107661342
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18648786 ~ 18684766 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680717.1
GACAGTAGCCAATCCCAGCAGCAGGTGGGCGGGGTTTCTCTGAgcgcaggtgtgtgtgttgtggtgtgagTACAGGTGTGAAGTGAAAGGTGAGTATGCAGTATGTAGTGTTCTGGCTCTGTGCCCCCTGGTTCTGGTTTTGGTGGTTCTGCTGGTTCTGGACTCTGAGGCAGCGGGAACTCGCAGAGGGAGTGTCCGCCTCCCGCCGCCCCAAAGCCCGCCCCAGTCCCAGCGCCGCCCGGTCCGGCCCAGCCCAGCCCAGCCGGGTCTCCCCAGAGCTTATCCGAACACATGCAGCAGCCATGCAGTCCCTGTGCTGGACCGCTCTCCTGCTGCAGCTGGGCCTGCTGCTCGCTACCGGGCTCGAGCTGCCGGTTTGGTCTGAACCCACTGATACCGAGGAGATCGACTACAAGGACCCGTGCAAAGCCGCCGCGTTCCTGGGGGACATCGCTCTGGACGAGGAGGATCTTCGCTATCTCCGACTGGAGCAGGCTGGACCGGCTAGCTCTAACACCACTGACCCAGAAAACACAACACTAGGATACGGACCCACAGAGGCTAACGCTAACAGCAGCAGGGGCAACGGGTCGGTCTGGGATGGGACGGATCTTCCCCGCAGGAGGAGAGCGGCCACCGCCCGGTCCGAGAGGGTGTGGCCTGATGGGGTCATCCCGTATGTCATCAGCGGAAACTTCAGTGGCAGCCAGAGGGCGATCTTTAAGCAGGCCATGCGTCACTGGGAGAAACACACCTGCGTCACTTTCACTGAGCGAGCCGGAGAGGAGAGCTACATCGTCTTCACCTACAGACCATGCGGCTGTTGTTCGTATGTGGGGCGGCGGGGCGGGGGTCCTCAGGCCATCTCCATCGGCAAGAACTGCGACAAATTTGGCATAGTGGTTCACGAGCTGGGTCACGTGATCGGCTTCTGGCACGAACACACGCGACCCGACCGAGATGCACACGTCAGCATCATCAGAGAGAACATCCAGCCAGggcaGGAGTATAATTTCCTGAAGATGGAGCCGGGGGAGGTGAATTCGCTGGGGGAGGTGTATGATTTCGACAGCATCATGCATTACGCTCGCAACACCTTctccagagGCATTTTTCTGGATACGATTCTGCCACGCTATGATGTAAATGGGGCCCGGCCTCCGATTGGTCAGCGGACAAGGCTAAGTAAAGGGGACATCGCTCAGGCCAGGAAACTCTACAATTGTCCCAAGTGCGGTGAAACTCTGCAAGAAAGTTCTGGGAACTTCTCGTCTCCTGGGTTCCCCAACGGCTACAGCGCATATTCCCACTGCATCTGGAGCATCTCCGTCACCCCAGGCGAGAAGATCGTCCTGAACTTCACCTCCATGGACCTGTACCGGAGCCACCTGTGCTGGTATGATCACGTGGAGGTTCGAGACGGGTACTGGAGAAAAGCTGCTTTGAAAgGTCGTTACTGTGGAGACCAGCTTCCAGAGCCAATCATCTCCACAGACAGTCAGCTGTGGGTGGAGTTTCGCAGCAGCAGTAACTGGGTGGGGAAGGGATTCTCTGCTGTATATGAAGCAATTTGTGGAGGGTCTGTTAAGAGGGACAGTGGTCAGATCCAGTCGCCAAACTACCCCGACGACTATCGCCcgaataaagtgtgtgtgtggaagataACGGTGGCTCAAGGATTCAACGTGGGGCTTCACTTCCAATCGTTTGAGGTTGAGCGTCACGACAGCTGTGCGTACGACTATCTGGAGGTTCGGGATGGAAATTCTGAGAGCAGCCCGCTGATTGGACGATTCTGTGGCTACGACAAACCTGGCGACATTAAGAGCAGTTCCAACCGGCTGTGGATGAAGTTTGTCTCTGATGCTTCTGTCAACAAAGCGGGATTCTCTGCTAACTTCTTTAAAGagACGGATGAGTGTGCCAGGCCTGATAGAGGGCAGTGTAAGCAGCGCTGTATAAACACTCTGGGTAGTTATCGCTGTGGGTGTGATCCAGGATTTGAACTGGCCTCGGACCGTCGCAGCTGCGAGGCTGCGTGTGGGGGGTTTATTACGAAGCTGAACGGCTCCTTCAGCAGCCCCGGCTGGCCCAAAGAGTACCCCCCCAATAAGAACTGTGTGTGGCAGCTGGTGGCGCCGGCACAGCACCGCATCACTCTGCTGTTCGACAGTTTCGACGTGGAGGGCAATGATGTGTGTAAGTATGATTATGTGGAGGTACACAGTGGTCTCTCTTCCGACTCCAAGCTCCATGGCAGGTTCTGCGGTTCTACTAAGCTAGACCCGATCACCTCCCACTCCAACAACATGCGGATCGAGTTCAAGTCCGACAACACCGTCTCCAAACGAGGCTTCAAGGCTCACTTCTTCTCTGATAGGGATGAATGCTCGAAGGAGAACGGCGGCTGTCAGCACGAGTGCGTCAACACCTTCGGGAGCTACACCTGCCAGTGTCGCATCGGATTCTCCCTGCATGATAATAAACACGACTGCAAGGAAGccGGCTGTGATCAGGTCATCACCAGTGTTTCCGGCACCATCACCAGCCCCAACTGGCCAGATAAATACCCCAGTAAaaaagcctgtagctgggcccTGTCCACCACACCTGGACACCGCATCAAACTGgcgtTTAATGAGATAGATATGGAGAGTCATCTGGAGTGCTCGTATGATCATGTGGAGGTGTATGATGGTGGTAACGGGAGGGCTCCCAGTCTGGGTCGGTTCTGTGGGGGTAAAAAGCCTTCCCCGGTCTTCTCCAGCGTGAACACGATGTTCCTGCGCTTCTTCTCTGATAACTCCGTTCAGAAGAGAGGATTCCAGGCTTCTCATAGCTCAGAGTGTGGTGGAGGTCTGAAGGCGGAGGTGAAGACTCGGGATTTTTACTCTCATGCTCAGTTCGGGGATAATAACTACCCCGCGGCAGCGGACTGTGAGTGGGTGATCTCGGCGGAGAAGGGTTACGGGGTGGAGCTTATCTTCCAGACCTtcgagctggaggaggaggcggaCTGTGGATACGACTTCGTAGATCTGTTCGACGGATCCGACGCTAAAGCTCCACGACTCGGACGCTACTGCGGATCCGGGCCCCCAGAGGAAATCTACTCAGCCGGCGATGCCATCGTTCTCAGGTTCCACTCAGACGACTCCATCAGTAAGAAGGGCTTCCACGTTCGCTACACCAGTACAAAGTTTCAGGACACACTGCACACCAGTAAGTGAATACCAGTTCTCAAACTGGGGGAGGAGCTTCGGTAAAGAAGAACACAGCACAAACACGGATTTTAACtggttttaacacttttagctCTGAAAGGAGGGGCGGAGCAGCCATAAGAGGGGCATGACCACACAGTGCCCCATAGCAAGTCTGTCTAGGTTTACGTATAGCATGATTTTaaactgatggtgagtgagcgagtgagggATGACCCATGTTGCTGATAAATGGGCGGAGCCATGGAGTAAGCACCCAGACCTCTCCAGGCTCCGCCCACTGCTGTGTTTCTTAATAGGTACTGTTGGGAGACTGGAGCTCCGcctgcctctctctcacacctccAGAATCTTCTGCCCAAAGATTGAGATGTTTGAGAGTTTTTTTTGAATTTGTGAGATTTTCACATATTTTTGGCTGGTTTATAAAAATCTCCTGCACTTAAACTGAGAGAATTGTgattaaacacacactgatcagtgttacaggaaaaaaagaaggataatcagtgttattttaaagaactaa

Function

symbol description
bmp1 Enables identical protein binding activity and peptidase activity. Involved in proteolysis. Acts upstream of or within positive regulation of cartilage development. Predicted to be located in extracellular region. Implicated in osteogenesis imperfecta type 13.

NR:

description
PREDICTED: bone morphogenetic protein 1-like

GO:

id name namespace
GO:0001503 ossification biological_process
GO:0048264 determination of ventral identity biological_process
GO:0006508 proteolysis biological_process
GO:0033333 fin development biological_process
GO:0005509 calcium ion binding molecular_function
GO:0005515 protein binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K05502 BMP1, TLD; bone morphogenetic protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680717.1 True 3753 mRNA 0.54 20 18648786 18684766

Neighbor

gene id symbol gene type direction distance location
pcna pcna,LOC107658578,LOC107583397 coding downstream 39653 18604544 ~ 18609133 (-)
LOC103026456 kcnip3,kcnip3b,LOC107092684,LOC106535652,LOC103473704,LOC103026456,LOC108440143,LOC107678047,LOC107572711,LOC107720714 coding downstream 52972 18579751 ~ 18595814 (-)
LOC103025819 rassf2 coding downstream 71021 18571229 ~ 18577765 (-)
LOC103025514 NA coding downstream 78724 18565701 ~ 18570062 (-)
LOC103023096 ddhd2,LOC108440555,LOC107678050,LOC107553701,LOC107720719 coding downstream 166670 18459004 ~ 18482116 (-)
LOC103045381 LOC108440153 coding upstream 1904 18686670 ~ 18691097 (-)
LOC103045990 aak1b,LOC108440145,LOC107583399 coding upstream 61482 18746248 ~ 18791052 (-)
brf2 NA coding upstream 156305 18841071 ~ 18847381 (-)
LOC103028676 NA coding upstream 163229 18847995 ~ 18870141 (-)
LOC103029209 gpat4,LOC108440151,LOC108277038,LOC107746208,LOC107558124 coding upstream 188351 18873117 ~ 18883171 (-)
G177609 NA non-coding downstream 16116 18632414 ~ 18632670 (-)
G177607 NA non-coding downstream 19232 18629299 ~ 18629554 (-)
G177605 NA non-coding downstream 22254 18626289 ~ 18626532 (-)
LOC111195060 NA non-coding downstream 24065 18620199 ~ 18624721 (-)
G177596 NA non-coding downstream 83473 18561352 ~ 18565313 (-)
G177626 NA non-coding upstream 52098 18736864 ~ 18740579 (-)
G177617 NA non-coding upstream 58744 18743510 ~ 18798134 (-)
G177644 NA non-coding upstream 142837 18827603 ~ 18829287 (-)
G177669 NA non-coding upstream 266086 18950852 ~ 18954940 (-)
G177678 NA non-coding upstream 299046 18983812 ~ 18987415 (-)
LOC111195059 NA other downstream 30174 18614892 ~ 18618612 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 117151 18485642 ~ 18531635 (-)
G177568 NA other downstream 245778 18397582 ~ 18403008 (-)
G177526 NA other downstream 474261 18171849 ~ 18174525 (-)
stoml2 stoml2,LOC107686459,LOC107688641,LOC107569390,LOC106563216 other downstream 2858142 15780555 ~ 15790644 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other upstream 202262 18887028 ~ 18934600 (-)
G177704 NA other upstream 406380 19091146 ~ 19092146 (-)
LOC103035567 LOC103035567,LOC108425166 other upstream 435020 19119786 ~ 19128123 (-)
LOC111194984 sh2d4a other upstream 1053883 19738649 ~ 19739313 (-)
G178173 NA other upstream 2606756 21291522 ~ 21295833 (-)

Expression


Co-expression Network