LOC111194991


Basic Information

Item Value
gene id LOC111194991
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 21922330 ~ 21923015 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680719.1
ATGAAGACATCGTCTGCACCTCCTCACAGACCTCCCAGGTCCAGGGCTGCGGCTCTGACCATACAGGTAGACCATTCATACAGTTCCCTTTCCAGGACCACCGGAAAGTTCCTCATTCCGGAGGAATTTCAGGAACGTGCGGCTGTGCTTCCTCCTTTTCAGGCTTCCTCCACCATCACACCAGAGATGCCCGACTTCCGTCCACCTCCTGAGGTCCCAGACTCTCCGCTGTGGGTCCATGGTCTCAGTGTGGAGGAGTTCCAGGGTGTTTATCACTCTGTGGTGGATCCTCTCGTGGGATCCACATCTGGTAAGTTCTGCCTGCAGTTCGGCCGCGAGCTCAAGCAGCGTCTGTGGAGGGAGCTCCGCTGTCCCGTCCTGACTGAGGAGGTCCAGCCTGACGGACAGGTCAAGATCACAGAGGTCTTCAGCGCACCCACTCCAGTCCGGTCCGCCCCCAACTTTGACCTGGACACGAGTGAGGAGCCTCTGCCCGGTCAGCAGCCCAAGAAGAAGCGTCGCCGGTGCTGAAACCATCCAGCAGCCTTAAACTGGCAATTACATCAGAGATGAAGCTGAAAAACTCCAACATCAGCCTTCATCTTAATCTGGCAATTATgccagataaataaatagataaaatagatggtagatagatggataggtagatagataggtgggagata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680719.1 True 686 mRNA 0.54 1 21922330 21923015

Neighbor

gene id symbol gene type direction distance location
epha5 epha5,LOC108428864,LOC107702602 coding downstream 256604 21545217 ~ 21665726 (-)
LOC103045065 lpar1,LOC107554848,LOC107723319 coding downstream 499085 21389227 ~ 21423245 (-)
rassf6 rassf6 coding downstream 609393 21297384 ~ 21312937 (-)
tmem267 tmem267,si:busm1-79m10.4,LOC107653487,LOC107702605,LOC107750222,LOC107756535,LOC107554236 coding downstream 637633 21274520 ~ 21284697 (-)
sigmar1 sigmar1,LOC107573076,LOC107653128 coding downstream 1497560 20421350 ~ 20424770 (-)
plppr1 plppr1,LOC107653496,LOC107750956,LOC107702599,LOC107710008,LOC106568589 coding upstream 51492 21974507 ~ 22038937 (-)
snx30 snx30,LOC107569385 coding upstream 420441 22343456 ~ 22376932 (-)
enoph1 enoph1,LOC107702573,LOC107715850,LOC102782295 coding upstream 555698 22478713 ~ 22484769 (-)
trnam-cau_23 NA coding upstream 607593 22530608 ~ 22530679 (-)
trnam-cau_24 NA coding upstream 607809 22530824 ~ 22530895 (-)
G178237 NA non-coding downstream 89341 21832741 ~ 21832989 (-)
G178236 NA non-coding downstream 105928 21816127 ~ 21816402 (-)
G178201 NA non-coding downstream 406345 21515588 ~ 21515985 (-)
G178195 NA non-coding downstream 446688 21475230 ~ 21475642 (-)
G178156 NA non-coding downstream 600758 21268296 ~ 21321572 (-)
G178251 NA non-coding upstream 2477 21925492 ~ 21927360 (-)
G178279 NA non-coding upstream 176304 22099319 ~ 22099518 (-)
G178300 NA non-coding upstream 357330 22280345 ~ 22319081 (-)
G178309 NA non-coding upstream 410607 22333622 ~ 22334656 (-)
G178405 NA non-coding upstream 430859 22353874 ~ 22354311 (-)
G178173 NA other downstream 626497 21291522 ~ 21295833 (-)
LOC111194984 sh2d4a other downstream 2183017 19738649 ~ 19739313 (-)
LOC103035567 LOC103035567,LOC108425166 other downstream 2794207 19119786 ~ 19128123 (-)
G177704 NA other downstream 2830184 19091146 ~ 19092146 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other downstream 2987730 18887028 ~ 18934600 (-)
G178267 grin3a,LOC107710005,LOC107750958 other upstream 10504 21933519 ~ 21933831 (-)
G178426 NA other upstream 532482 22455497 ~ 22456779 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other upstream 578303 22501318 ~ 22509783 (-)
G178450 NA other upstream 749117 22672132 ~ 22672683 (-)
LOC111195067 NA other upstream 1012475 22935490 ~ 22941664 (-)

Expression


Co-expression Network