LOC103039144 (LOC108423784,LOC108277316)


Basic Information

Item Value
gene id LOC103039144
gene name LOC108423784,LOC108277316
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 28411012 ~ 28570105 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680725.1
ATGCAGCTCAGAGCTCAATTACTGCCAGCCTTGCTCAAATCCGCCGTTGAAGTCACTCATTCATTCAAGCGCAAAACCACCTCGTCTCTCCGATTTGCTCTCCGCCCGTCCCTCGACGTCTCCTGGACGTCTCCTCGACATCTCCTTCCTCCCGTCCGGAGGAGGGAACGCGGTAGTGCTATCAAATATCACCATCCCAGCAGCGTCGGCAGCTTCAGCACAGCTGAAGTGTATGATGATAAGCTGCAGCttttgtacctcttggtgagaaatcCCCAAGACACCAAGCTCCGATACATGCAGACTTTCAAAGATGCACTCAAAATAAGTTTTGACCAGTTGACAGATGATTTTGAGAGGGGAAGCATCGCTGGACTTAGAGAAGCAGGCTGGTTCTTTGACGAATTGCCTGCCAGCAAGGTCATCCATCAGCCACCTACGGCCACACTTGTTTGCAACGGTAGTGTCAACAAGAAACCTGGACTGCTATGGACTGGAACCATTCCAGCCAGGATCGTGAACATATCTCCGAACATAACGGTGAACGAGGGCAGCAACGTCAGCCTGATGTGTTTGGCCATCGGTCGACCTGAACCCAGCATCGTATGGAAATACCGCTCAGCCAGGGGTCGTCGGGTTGTCAACGAGGGGGAGTATGTTGAGATGACTGCAATCACCAAAGAGCAGTCGGGACCGTACGAGTGCGTCTCTTCCAACGAAATCTCGCCCCCGGACGTGAGGACGGTACAGGTCACAGTTAACTATCCTCCGGTCATTTCGAGGGCTCGCAGCACAGGAACCCCTGTTGGCCACAGAGGGGTACTGCAGTGCGAGGCATCAGCGGTTCCGCTGGCTGACTTTCAGTGGTATAAAGAAGATCGACCCCTCGTCAACGGACTCAACGGAGTGAAAATAGAGAACAAAGGTAAACAGTCCATGCTCATATTTTTCAATGTGTCTGAAGAGGACTACGGAAACTACACCTGCGTTGCCATGAACATGTTGGGCATCACAAACGCGAGCATAATCCTCTACGGTGCAGGAGCGATGCATGATGTGAACAGCGCTGCACTTTGTCCATCCATCTCCCCCTGCCTGCTGCTCGCCCTCGCTCTCTTTTACCTGAGCAAGTTTTGATGCTAGAGACCACCCCCTGCATCAGCTCCACTCggcattaaacacacagacagactcaAAAGGCCCATAAATAGAGCAGATTTCATTTCAGTTCTtcttctgattattattattattataatgatgatgatgactattattgttattaatatattgtcTTCGGTTTGGATTTTTTACTTTGCCTTACCGTTATTTTTTGGGGGAGGGTTAGGAACCGGGGCTCTGGGTGTAATCTGGGCTAATATGAATAATATGAGTCTGTTCTAAGAGAATAATACGAGACTGCATAAGGGTTCTTTGGTTTAATGGTTAGAGGTAATAGTAGAaccacagtgtgtgtgtctctccaaCCTTTTGTATGTAAAAGAACAGCAAAACGTCATGTGAttgtggaagaaaaaaaaaaataagaacaaaacaaaacagaaaaaaaaatggctggTTTTGCTCAGTATTCAAGTGTGTGAATTGGGAATTTCTGTGTCACGTCAGAGTTCCTTGTAAAATAACATGagattaattttgttttttttgttttttaaataatcgacaaaagtgcaaaaaaaaaaaaaa

Function

NR:

description
PREDICTED: neurotrimin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680725.1 True 1710 mRNA 0.46 7 28411012 28570105

Neighbor

gene id symbol gene type direction distance location
LOC103041089 lim2.1,LOC103041089,LOC108423752,LOC107579014 coding downstream 804729 27600092 ~ 27606283 (-)
bsx bsx,LOC107747047 coding downstream 816488 27591571 ~ 27594524 (-)
zpr1 zpr1,LOC107693980,LOC107747003,LOC107751399,LOC107577081 coding downstream 871302 27528660 ~ 27539710 (-)
LOC103027279 NA coding downstream 892450 27511131 ~ 27518562 (-)
vps11 vps11,LOC107691631,LOC107744603 coding downstream 917646 27480659 ~ 27493366 (-)
panx3 panx3,LOC107747045,LOC107686209,LOC107589683,LOC107579026,LOC107691702 coding upstream 369486 28939591 ~ 28949916 (-)
pknox2 pknox2,LOC107691639,LOC106567647,LOC106603668 coding upstream 383934 28954039 ~ 28998439 (-)
robo3 robo3,LOC107751391,LOC107577175 coding upstream 588935 29159040 ~ 29364276 (-)
picalm picalm,LOC107744613 coding upstream 1002549 29572654 ~ 29628399 (-)
cblb cblb,LOC107693962,LOC107576804,LOC107747038 coding upstream 1708991 30279096 ~ 30419086 (-)
G179671 NA non-coding downstream 16998 28393784 ~ 28394014 (-)
G179669 NA non-coding downstream 21632 28387972 ~ 28389380 (-)
G179651 NA non-coding downstream 446638 27912830 ~ 27964374 (-)
G179642 NA non-coding downstream 719624 27688126 ~ 27691388 (-)
G179597 NA non-coding downstream 743401 27666759 ~ 27667611 (-)
G179718 NA non-coding upstream 11932 28582037 ~ 28582269 (-)
G179737 NA non-coding upstream 44103 28614208 ~ 28614435 (-)
G179762 NA non-coding upstream 79772 28649877 ~ 28650659 (-)
G179764 NA non-coding upstream 83566 28653671 ~ 28653888 (-)
G179766 NA non-coding upstream 84417 28654522 ~ 28654748 (-)
G179578 LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586 other downstream 844320 27561845 ~ 27566692 (-)
G179583 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 885624 27524328 ~ 27525388 (-)
LOC103038646 zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012 other downstream 886877 27523131 ~ 27524135 (-)
ift46 ift46 other downstream 933034 27470086 ~ 27477978 (-)
G179569 NA other downstream 967696 27440231 ~ 27443316 (-)
G179816 NA other upstream 280585 28850690 ~ 28851105 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other upstream 2376841 30946946 ~ 30957767 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other upstream 3324097 31894202 ~ 32071924 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other upstream 3670074 32240179 ~ 32262598 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other upstream 3866220 32436325 ~ 32584343 (-)

Expression


Co-expression Network