LOC103028027 (LOC108423836,LOC107701140,LOC107720632,LOC107557229,LOC107718737)


Basic Information

Item Value
gene id LOC103028027
gene name LOC108423836,LOC107701140,LOC107720632,LOC107557229,LOC107718737
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 33303815 ~ 33367594 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680729.1
tcacagacgttCTCCTTTCAACCTGACTGAGTTTAAGCTGTTTTGCATAGAAGAATGGGCTacaatctcagtctctagatgcgcaagctggtagagacaaaccccaaaagactttTTTGCAGCTAAtagtggctctactaagtattaatAAAGGGAGGTAAATACTTTTTGCATGTcagacttttcagatttttatttgataaaaattttgaaaaccatgtatcatttttgttccacttaaTAATGTGTGCTACTTTGTTTGTCTATCATTTAAAGtctcaataaatacatttaagtttgtggttgtatggTGACAAATTCTGAAGAGGTTCAAGGGGTGAAAGGATGAAAAAAATGAGGACCTGAGGCAGTTTCTAGCAGTTGTCCACAGGGTAACGTgtgcattataaacattatgtcTTGCATGTCTTGTGTGTTTTCAGTTCACCCTCCAGAAAACTTAAGAGTTGACACCCTGGGCATGACCTCCAGCACAGCTGACGCAATGGTTGGGTTAAGGTGTGTCCCGGCCTCTGGCCCCTGCCGTGGATGTCTGTCACCATGGCCAAGCGCGAGACGGGCAGCACGAGTCCAGTGGTGCGGCAAATAGACAAGCAGTTCCTGGTCTGCAGCATCTGCCTCGATCACTACCACAACCCAAAAGTCCTGCCCTGCCTGCACACCTTCTGTGAACGGTGCTTACAGAACTACATCCCACCCCAGTCTCTGACCCTGTCCTGCCCGGTGTGCCGACAGACCTCCATCCTGCCTGAAAAGGGCGTGGCAGCTCTGCAGAATAATTTCTTCATCACCAACCTGATGGAGGTGCTGCAAAGAGATCCGGAGTGCTCCCGGCCCGAAGCCTGCAGTGTGCTGGAGTCGGTCAGCGCCGCGGCCGCTGGCAAACCTCTGTCCTGCCCCAATCACGAGGGCAAGGTGATGGAGTTCTATTGCGAGTCGTGTGAAACAGCCATGTGTCTGGACTGCACGGAGGGCGAGCACCGGGAACATGTGACTGTCCCACTGAGGGACGTCCTGGAGCAGCACAAAGCAGCACTGAAGAACCAGCTCGACGCCATCCGCAACAGGCTTCCTCAGCTAACAGTGGCTATAGAGCTGGTCAGTGAAATTTCCCGGCAGCTCACAGAGCGAAAGAACGAATCGGTGAATGAGATAAGTTGCACCTTTGAAGAGCTGGAGAGAGCGCTGCACCAGCGCAAGGCTGCCCTCATCGCTGATCTGGAGAACATCTGCAGCACCAAACAGAAGgtgctGCAGGCACAGCTGTCTTCCTTGCAGCAGGGTAAAGAGAACATCCAGAGCAGCTGCAGTTTCACAGAGCAGGCCCTGAGCCATGGCAGTGCCACTGAAGTACTGCTGGTGCAGAAACAGATGAGCGAGAGGGTCAGCGCCCTCGCACGCCACGACTTCCCTGAGCGCCCGCACGAGAACGCCCACCTGGAGTGTCAGGTGGAGACGGAGGGACTGCGGCGCTCCATCCAGAACCTGGGCGTGTTGCTGACCACCAGCGCGGTTGGACACACCAGCGTGGCCACCGGAGAGGGTCTGAGACACGCCGTTATCGGCCAGCACGTTACAATAACCGTCACCACCAAAGACAAAGACGCAGAACTGGTGAGGACCGGAAACGCTGCTTTAAAAGCAGAGATAACAGGACACGATGGGGGGCGTGTGGCTGAGGTAGAGGTGGTGGACAATAAGAATGGAACGTATGAGGTGGGCTATACGCTAAAGAGTGAGGGGGAGTACTCCGTCTCTCTGCTGCTGTACGGCCAGCCCGTCCGTGGAAGCCCCTTCAGGCTGCGTGCTGTAAAACCTTGTGATGTGCCCCAGTCTCCGGATGACGTGAAGAGGAGAGTGAAGTCCCCAAGTGGGACTGGAGGCCACATCCGACAGAAAGCTGTCCGGAGACCCTCCAGCATGTACAGCACCACAAAGAAGAAGGAGAACCCTATCGAGGATGAGCTGATCTACAGAGTAGctatctatgacaACCGATGGATAAGCATCTTCTCCTCAGATGGGAAGTTTAAGAATAAGATCGGGGCGGGGAGGCTGATGGGCCCAAAGGGTGTTGCTGTGGACCGAAACGGCCACATCATCGCAGTGGATAACAAAGCCTGCTGTGTCTTCATCTTTCAGTCGAATGGAAAACTGGTCACCAAATTCGGGGCCAGGGGCACCTCAGACAGACAGTTTGCAGGTCCTCACTTTGTGGCTGTGAACAACAAAAATGAGATCATAGTGACGGACTTCCATAACCATTCTGTTAAAGTGTTCAGTGCCGACGGAGAGTTCCTCTTTAAGTTCGGCTCTCACGGTGAAGGAAATGGCCAGTTTAATGCACCAACAGGAGTAGCTGTGGATGCTAATGGCAACATCATTGTAGCAGACTGGGGCAACAGCAGGATACAGGTGTTCGACTGCTCAGGGTCCTTCCTGTCCTACATCAACACGAGTGCAGACCCTCTGTATGGGCCTCAGGGTCTGGCCCTCACCTCGGATGGTCACGTGGTGGTGGCTGACTCGGGAAACCACTGCTTTAAGGTGTATCGTTACCTGCAGTAGCGCCGGGGCCGGCGTGCAGGAGCCGCCTCCACCTCTCCTGCTTTCCCTCTCGTCAAACCCTGTTTTGCACATTCATTTCGGCTCGGAACTCTCAACCCAACCCCAGCGGAGAACGAACGGAAAGCACGAGAGCACTTTCCCCCCCCCCTTCCTTCTTCTAATGATGCTGTGCCCCCTTCCTCCTCTCCCCCAAAGAAAGCTAAAAATACCAGAGTGAGTGAACTGTTGTTATTGGTAGTATTTGGTCCTGACCTTATGATTGTTTGGGAGGGGGCGGCAGATAATCATATTGAAAAGCACAGATGTTTTACAGTAATCACTAACCTCTAACTCCAGAGGTCAACGTTAAATTAAAAGTTTGAGTTGTATATATTTCACTGAGCGAATTGTTGGTTTCTTtttgttatgattttttttttttaaacgagtGTCTTAACCTTGTTGAAGAGTCACTAGTTTTTTAGGTGGGTTTGGGCTTAGAACGAAAGTAAAGCCTCTGTACCAGCTTCCTattcttcactctctctccttcagaACGGAGTCACACTGTCTGTCCTTCGACTGCAACACCACGTGGGTTTTCTGACTGTGTATTTGTATCTATAACGCATATCCGTGTACCTGTAAATatgcatatgtgtgtatatatctgagaatatatatgtatatgtaaccTGTA

Function

NR:

description
PREDICTED: tripartite motif-containing protein 3-like isoform X2

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680729.1 True 3268 mRNA 0.51 12 33303815 33367594

Neighbor

gene id symbol gene type direction distance location
LOC111195091 NA coding downstream 126318 33176763 ~ 33177497 (-)
LOC103035222 trpc4,LOC108423767 coding downstream 376062 32872810 ~ 32927753 (-)
LOC103035536 NA coding downstream 455589 32771805 ~ 32848226 (-)
scaf4 scaf4,LOC106950580,LOC106934797 coding downstream 623097 32661216 ~ 32680718 (-)
sod1 sod1,LOC106604042 coding downstream 645375 32651318 ~ 32658440 (-)
LOC103027697 NA coding upstream 5906 33373500 ~ 33395265 (-)
LOC107197574 arfip2b,LOC108438961,LOC108276920,LOC107557232,LOC107718740,LOC107555180 coding upstream 31761 33399355 ~ 33446115 (-)
LOC103027380 LOC108438972,LOC108277286,LOC107718741,LOC107701146,LOC107555179,LOC105907404,LOC107720538,LOC107693876 coding upstream 159078 33526672 ~ 33746776 (-)
LOC107197575 NA coding upstream 466351 33833945 ~ 33835554 (-)
eva1c NA coding upstream 553770 33921364 ~ 33935796 (-)
G180778 NA non-coding downstream 20206 33283379 ~ 33283609 (-)
G180709 NA non-coding downstream 197350 33106160 ~ 33106465 (-)
G180707 NA non-coding downstream 217060 33086525 ~ 33086755 (-)
G180687 NA non-coding downstream 267455 33036060 ~ 33036360 (-)
G180677 NA non-coding downstream 336160 32967398 ~ 32967655 (-)
G180843 NA non-coding upstream 224044 33591638 ~ 33612072 (-)
G180832 NA non-coding upstream 230711 33598305 ~ 33662494 (-)
G180889 NA non-coding upstream 395806 33763400 ~ 33763639 (-)
G180893 NA non-coding upstream 427069 33794663 ~ 33794995 (-)
G180949 NA non-coding upstream 471813 33839407 ~ 33886265 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other downstream 719472 32436325 ~ 32584343 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other downstream 1041217 32240179 ~ 32262598 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other downstream 1231891 31894202 ~ 32071924 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other downstream 2346048 30946946 ~ 30957767 (-)
G179816 NA other downstream 4452710 28850690 ~ 28851105 (-)
LOC103033173 NA other upstream 437646 33805240 ~ 33855632 (-)
LOC103042595 LOC106931471,LOC106940241,LOC106603438,LOC107659943,LOC101067200 other upstream 2065638 35433232 ~ 35470789 (-)

Expression


Co-expression Network