LOC103023820


Basic Information

Item Value
gene id LOC103023820
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 35607772 ~ 35618274 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680733.1
AATTCAAATGGCACAAAATAAACTTGTGTGTGTGACAACATCAGGATCAAGCACAGGACCTGCTGACAGGACATCTATTCACACCACCAATAATATCTCCACTGTGATAAGCACAGCCCCTACTACAACTTTAACAGCCCTGTCACAAACATCAAGCACTGTGAAAACACCAGAGCAGATCTcagcaaaaacaacagcaaccaCCGCACAAACCACAAGTTCAACAGCCTCGTCACAAACATCAAGCACTGTGAAAACACCAGAGCAGACCACAGCAGCAGGCATCACACCTACTAGTTTAAAAAATGCAACCAAAACTGCTATGGCTGTGTCAGAGATTACAGAAAAGCTCAATAACTGTACCAGCATTAACCAAACCGAGGCCaaaaaaatcctcagaaaaATCACTGATCTCATGGGTCCAGTTACACCAGACCACACTAACAGTCAAGCCAGTGTGCAGAAGAAAATTGTTGCAGCTATAGAATTACTGCTGCAAAAAGTCGAGATCAATGAGAGTGTGATAATGCACTCAGATTCTTTAATTGTGGCAGTGAAGAAAGTGAATGGCACCAACTTTCAGAAGACCTCCTTTACCATGACTAATTCTTCCAACCTGCAGATTGATGGTGGTCCCACTGATGGCTCCACCCCTCAGGCCAGTATTATGTTCCCTGACGCCCTCATGGAGAATCTGAATGCTGAGCAGAGGCTACAGGCTTCCAGAATACAATTCTCTTACTATCaaactgctgttgtttttcagGACACGTCTCTGAACTCGACAAAGGAGGTGATCAGCGGAGTTCTGGGCTCCAGTGTGTCTAACCTGACCATCTCCAATCTGAGAGAGAATATAACAATCACACTGAGgaacaataaaagtgtttcggtcaATGGATCAGGGGGCTGGAGCGTTGAGGGCTGTACTGTGCTGAATTGGACAGAGAATGAGACGGTGTGCAGCTGTAACCATCTTACAAACTTTGGTGTTCTGCTGgaCATTTCTAATAACTCAATAAGGAGTCCTGTGCACGTTGCCATCCTCAACAGCTTGACCTACATAGGCTGCTCCATGTCCTGCATCTTTCTAACCATCACCTTGTTTATGTATCTGCGGATTAAGAAACTACGTAAAGACATCCCTAATAAAATCCTGATCCAGCTGTGTCTGGCTCTGCTGTTCTTGAACCTGGTGTTCCTCCTGGACTCCTTTCTGGCTAAAGAGCTCAGTAATGTTGGTCTCTGCATCTCCACAGCCTTCTTTTTGTGCTACTTCCTACTGGCGTCTTTTACTTGGATGTCCCTGGAATCGTTGCACATGTATCTGAGCATCGTCAAAGTTTTCAACAACTACATCCCCCACTTCATGATCAAGATAACAGTTGTTGGATGGGGCATTCCTCTGGTCGTGGTCGCCCTTCCTACAGCTGTTTTTGAAAATTCTTTTGGATTATTACACACAGTGTTGGATGATGGATCTGTAGAGAACTTCTGCTGGTGGACAGACCAGGGTAGCATCCGCACTGTGGTGGTGGTATATTTCTGCGTTACGTATGCGCTGAACTTCACCATGTTTATAGTGGTGATGGTGCTTCTGTGTCGTATTAAGAGGAGTAATCCACACCGTGAACGCGGCAGGACCTCGCTGCAGGACGTCTGGAGCGTGACGGCTCTCGCTGTTCTGCTGGGTCTCACCTGGgcctttggtttgttttttgtctgGAAATCTGTTCATTTGGTCTCCATGTACCTGTTTACCATCTGCAATTCACTGCAAGGTAAGcaaaggtggaaaaagtactga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680733.1 True 1807 mRNA 0.46 12 35607772 35618274

Neighbor

gene id symbol gene type direction distance location
LOC103043521 adgrg2 coding upstream 11526 35557928 ~ 35596246 (+)
LOC103023494 LOC107577900,LOC108442441 coding upstream 65981 35518171 ~ 35541791 (+)
LOC103023179 tmem120a,LOC108276692,LOC107728827,LOC107579123 coding upstream 103009 35498326 ~ 35504763 (+)
styxl1 NA coding upstream 112477 35488602 ~ 35495295 (+)
LOC111195094 NA coding upstream 244020 35359733 ~ 35363752 (+)
LOC111194993 NA coding downstream 3825 35622099 ~ 35629462 (+)
LOC103024448 LOC108413536 coding downstream 118691 35736965 ~ 35789237 (+)
LOC103047081 LOC103047081,LOC108411574,LOC107589340,LOC100004523,LOC107697431,LOC107686183,LOC107578020 coding downstream 357203 35975477 ~ 36166303 (+)
G181424 NA non-coding upstream 63556 35542348 ~ 35544216 (+)
G181415 NA non-coding upstream 119304 35484101 ~ 35488468 (+)
G181413 NA non-coding upstream 125150 35482286 ~ 35482622 (+)
G181408 NA non-coding upstream 135840 35470705 ~ 35471932 (+)
G181390 NA non-coding upstream 197408 35408580 ~ 35410364 (+)
G181439 NA non-coding downstream 11897 35630171 ~ 35631951 (+)
G181556 NA non-coding downstream 168827 35787101 ~ 35792691 (+)
G181586 NA non-coding downstream 242927 35861201 ~ 35901409 (+)
G181605 NA non-coding downstream 303471 35921745 ~ 35922340 (+)
G181614 NA non-coding downstream 367791 35986065 ~ 35989603 (+)
LOC107197592 NA other upstream 179 35600483 ~ 35607593 (+)
nsun5 nsun5,LOC102793237,LOC107686168 other upstream 204148 35392521 ~ 35403624 (+)
LOC103024954 LOC108423745 other upstream 1100448 34334576 ~ 34507324 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other upstream 1278802 34172924 ~ 34328970 (+)
ufm1 ufm1,LOC107701138 other upstream 2539840 33050242 ~ 33067932 (+)
LOC103044041 NA other downstream 66730 35685004 ~ 35702995 (+)
LOC103024766 zdhhc20a,LOC107589301,LOC107743391,LOC107686182,LOC107728865,LOC107697429,LOC108411113,LOC108276908 other downstream 197761 35816035 ~ 35842871 (+)
G181734 NA other downstream 588293 36206567 ~ 36209854 (+)

Expression


Co-expression Network