LOC111194993


Basic Information

Item Value
gene id LOC111194993
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 35622099 ~ 35629462 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680734.1
ATGCGTGAACTTCACCATGTTTATAGTGGTGATGTGCTTCTGGTGATTAAGAGGAGTAATCCACACCGTGAACGCCGCAGGACCTCGCTGCAGGACGTCTGGAGCGTGACGGCTCTCGCTGTTCTGCTGGGTCTCACCTGGgcctttggtttgttttttgtctgGAAATCTGTTCATTTGGTCTCCATGTACCTGTTTACCATCTGCAATTCACTGCAAGGTTTTTTCATCTTTGTGTTCCGCTGTGCAACAAAGGAAGAATTTAAAAGGATGTGGAGGAAGTACATCTGCTGTGGAAAGTTGGGGAAGGTCCCAGGAGGACTATTGAGTGGGGTTACCTCAGTCTTATCACATAAATCTTTCTCAACCTCCCTGGACATGGAGTCCAGCTCAAAATCTCAAAGCACCGTCAATTTCAGTGAAACAACTAATGATCCTACGCCAGACACGGAAACGAAACTTCCTGAAAAACTTCCGTAATAAGACATGAAACATGACATACAGGATTATGTGTTTATGAGAAACAGTCAAAATCAAAATTAGAAATGTttttacagtaacagtaaaaataatatttatgtgTAAATAATATGATTTTGTAGCAGTTTAATAATAACTGCAGATTTTGtggatttttgctatttatttaaatgtgagaAATGTCAGTACAGCACTGTTGAACAAAAACtacaggaatatatatatatttttctgcatCAGAAACGTTTTGAAAAGTTTTGACATGAGCCACAGTGGGTAGTCTAAATAGGTTTGTTCACCTCTATTGTACAGAAGTAGTTTTGAGGTACGAATGTTGgctaacactttacattaagtgttgac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680734.1 True 843 mRNA 0.39 4 35622099 35629462

Neighbor

gene id symbol gene type direction distance location
LOC103023820 NA coding upstream 3825 35607772 ~ 35618274 (+)
LOC103043521 adgrg2 coding upstream 25853 35557928 ~ 35596246 (+)
LOC103023494 LOC107577900,LOC108442441 coding upstream 80308 35518171 ~ 35541791 (+)
LOC103023179 tmem120a,LOC108276692,LOC107728827,LOC107579123 coding upstream 117336 35498326 ~ 35504763 (+)
styxl1 NA coding upstream 126804 35488602 ~ 35495295 (+)
LOC103024448 LOC108413536 coding downstream 107503 35736965 ~ 35789237 (+)
LOC103047081 LOC103047081,LOC108411574,LOC107589340,LOC100004523,LOC107697431,LOC107686183,LOC107578020 coding downstream 346015 35975477 ~ 36166303 (+)
G181424 NA non-coding upstream 77883 35542348 ~ 35544216 (+)
G181415 NA non-coding upstream 133631 35484101 ~ 35488468 (+)
G181413 NA non-coding upstream 139477 35482286 ~ 35482622 (+)
G181408 NA non-coding upstream 150167 35470705 ~ 35471932 (+)
G181390 NA non-coding upstream 211735 35408580 ~ 35410364 (+)
G181439 NA non-coding downstream 709 35630171 ~ 35631951 (+)
G181556 NA non-coding downstream 157639 35787101 ~ 35792691 (+)
G181586 NA non-coding downstream 231739 35861201 ~ 35901409 (+)
G181605 NA non-coding downstream 292283 35921745 ~ 35922340 (+)
G181614 NA non-coding downstream 356603 35986065 ~ 35989603 (+)
LOC107197592 NA other upstream 14506 35600483 ~ 35607593 (+)
nsun5 nsun5,LOC102793237,LOC107686168 other upstream 218475 35392521 ~ 35403624 (+)
LOC103024954 LOC108423745 other upstream 1114775 34334576 ~ 34507324 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other upstream 1293129 34172924 ~ 34328970 (+)
ufm1 ufm1,LOC107701138 other upstream 2554167 33050242 ~ 33067932 (+)
LOC103044041 NA other downstream 55542 35685004 ~ 35702995 (+)
LOC103024766 zdhhc20a,LOC107589301,LOC107743391,LOC107686182,LOC107728865,LOC107697429,LOC108411113,LOC108276908 other downstream 186573 35816035 ~ 35842871 (+)
G181734 NA other downstream 577105 36206567 ~ 36209854 (+)

Expression


Co-expression Network