LOC111194994 (atp6v0a1,LOC108444241,LOC107567567)


Basic Information

Item Value
gene id LOC111194994
gene name atp6v0a1,LOC108444241,LOC107567567
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 36246373 ~ 36253870 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680737.1
CGTTGTGAGGAGAATGGACCGTAAACTGAGATTTGTTGAGAAGGAGATAAAGAAGGCCAACATAACCATTGTAGACACAGGGGAGAACCCAGAAGTCCCTTTTCCCCGAGACATGATAGATTTGGAGGCTACTTTTGAGAAATTAGAGAATGAGCTGAAGGAAATCAACACTAACCAGGAAGCCCTTAAGAAGAATTTCTGGAGCTGACTGAACTCAAACACATCCTCAGACGCACACAGCAGTTTTTTTGACGAGATGGAAGACCCTTCTCTGATGGAGGAGTCATCCACTCTACTAGACCCAAATGAGGTTGGACGAGTGGCTCCGCTTAGGCTGGGGTTTGTAGCTGGTGTGATTGGAAGAGAGAGGATCCCCACCTTTGAGCGGATGTTGTGGAGAGTTTGTCGTGGTAATGTGTTCTTGCGGCAAGCAGACATCGAGGATCCACTGGAGGACCCCACAACTGGTGACCATGTGCACAAGTCGGTGTTCATCATCTTCTTTCAAGGAGACCAGCTGAAGAACCGAGTGAAGAAGATCTGTGAAGGGTTTCGGGCTTCATTGTACCCCTGCCCTGAGACCCCCCAAGAGAGGAAGGAGATGGCAGCAGGAGTGAATACTCGTATTGATGATCTTCAGATGGTGAGTACGCACATGTGCATAACAAAACACATGTCAAACATGCATATGTGCCAGGCAGAGTTGCATCATCATTTCGTCTGTGAGTCGAGGCGGCTCCTGCGGGTGGCTGTTTTGTAA

Function

symbol description
atp6v0a1 Enables ATPase binding activity. Involved in regulation of macroautophagy. Located in several cellular components, including Golgi apparatus; cytosol; and nuclear speck.

NR:

description
V-type proton ATPase 116 kDa subunit a isoform X4

GO:

id name namespace
GO:0001845 phagolysosome assembly biological_process
GO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680737.1 True 760 mRNA 0.49 8 36246373 36253870

Neighbor

gene id symbol gene type direction distance location
ovca2 ovca2 coding downstream 303654 35905684 ~ 35942719 (-)
smg6 NA coding downstream 372787 35846390 ~ 35873586 (-)
LOC103045257 LOC108411116 coding downstream 435702 35806732 ~ 35810671 (-)
LOC103044945 gabrr3,gabrr3a,LOC107589257,LOC107697425,LOC107686176,LOC106603079,LOC106563567 coding downstream 572209 35638005 ~ 35674164 (-)
rhbdd2 NA coding downstream 694185 35542319 ~ 35552188 (-)
G181735 NA non-coding downstream 36669 36206486 ~ 36209704 (-)
G181716 NA non-coding downstream 315425 35930607 ~ 35930948 (-)
G181714 NA non-coding downstream 329566 35916582 ~ 35916807 (-)
G181700 NA non-coding downstream 377405 35838820 ~ 35868968 (-)
G181686 NA non-coding downstream 419277 35798717 ~ 35827096 (-)
LOC103042595 LOC106931471,LOC106940241,LOC106603438,LOC107659943,LOC101067200 other downstream 775584 35433232 ~ 35470789 (-)
LOC103033173 NA other downstream 2390741 33805240 ~ 33855632 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other downstream 3662030 32436325 ~ 32584343 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other downstream 3983775 32240179 ~ 32262598 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other downstream 4174449 31894202 ~ 32071924 (-)

Expression


Co-expression Network