LOC103042590 (LOC108425226,LOC107706806,LOC107588954)


Basic Information

Item Value
gene id LOC103042590
gene name LOC108425226,LOC107706806,LOC107588954
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 67586 ~ 108381 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680741.1
AGCTTTtatttagctaacctagctagcttcaCCTCACAGCAGAGAAGCATCCGGAATCAGCAGCTAATCTCTGAGTGGCCCAGAGTGTCCAGCCAAATGAGAGTGATCAGAATGGACAGCGGCAAATGGAGATTCAATTTCACACGTCACCTGCTCCTCCTTAGAGTGGAATACAATCCTGTTTGAAGGAGAAGGGAAATTACAGCTTTAAATCTTCATATTCTTTCTCCAAATCTGGAAAAGTGACAGATGAGCTCGATATCACCCAGACGAGAGTGAGAAGATGCCACCcctcagacagagagaggagagagaagatgGGCACAGCGGTGTCCAGCACATCGTCTGTCCTCTCCCTCAGCCCAGTTTATTTCCtggaagaatatatatatatatgtattttgagGAAAGTAAATCCCTAATTGCTGCTGCGGCGGGAAGTCGGGCCAGGAGATGGAGAGAGCTACTTTAATCAGAGGTGATGAGCATCATTTATCTGACATCAAAGGAAATGCAGCACCCCCCTCGATCAATACCCACAGTGTGGTGTGCCCCCGCCATTCGATACGGCCAGTATGAACTCCCAGTCCGTCACGTTTCCAGCCATCCTCTCCCGGTCACTCGTACCCAGGCCCCGGGCGGCTGAGCGCTCCCCCGGTGCGAGGGCAGGGCGGGGGTGAGGGGTACTGGTGGTTAACTGGTTTACAGTACCGCACTGGTCAGTCTCTGGGTTCTGGTGCTGCTGTGCTCCAGCCCAGTCTCAGATCTCCACCATCACCGAGTTCATGCTCCTCCGCACTCATCCTTAAGAATGGATCATGACcatcacagcagcagcaggaggagcgGCCACAGCCGACACTGCGAGGATGATGATGATAATCAGTCCATTTATATCGGGGTTCCCGTGCCGAGGGGCTACAGGCGGAAGCGGCGACGCCACAGGCACACATCACGCCACGACCACAACCACGGCCGCGACAAACACTACGACCGCCACGAGCACCACGCCCACGACGAGCAGTCCGATCCCGACGACGCCGGGCAGGACTCCACCGAGCAGCTCTCAGACATCAACTCCACCTtgtctCCTGCTGCAGAGAGACTGCGCTCCATCCTGGGGGAGGATGATGACCCCACCCCCACCCTCTTCACTGAGATGGACACACTGCAGCATGAGGGCGGAGAGCTGGAGTGGAAGGAATCGGCCAGGTGGGTGAAGTTTGAGGAGAAGGTGGAGGAGGGTGGAGAGAGGTGGAGTAAACCCCACGTCTCCACACTGTCTCTGCACAGTCTGTTTGAGCTGAGGACCTGTTTACAGACCGGCACCGTCCTGCTGGACCTGGAGGGCTACTCTCTGCCCCAGATAGTCGATGATGTGGTGGATAAGCAGGCGCAGGACGGGCTGATAGCTCCGGAGCTGAAGGAGAAGATCAGTTTTGTTCTGCTGAGGAAACATCGCCACCAGACCAAGAAACCCATCCATCGCTCTCTGGCCGACATCGGGAAGCCCGGCCCTTCTACTAAAGACCGCAGTCCGAGCCGCAGCCCGAGCTGTGCGTCCGGCCTGCACCGCTCCACCGAGGACCTGCGAGCTCGCCAGAGCGGTAGCCTCGGAAAACTTCATCCCTCCCAGTGTCGGAGTATGAACGACATCTCAGTTACTCCCAGCAGTGACCAGCTGAAGAATAAGTTCATGAAGAAGATTCCCCGCGATGCCGAGGCGTCCAACGTCCTGATCGGAGAGGTGGACTTCCTGGAGAAGCCGGTCGTGGCTTTTGTCCGTCTCGCTCAGGCCACGACGTTAGGAGGCCTGACCGAAGTCCCCGTCCCCACCAGGTTTCTCTTCGTGCTGCTCGGTCCTCAGGGGAAAGCCAAGTCCTACAATGAGATTGGACGAGCCATGGCCACACTCATGGTGGATGATCTGTTCAGTGACGTGGCGTATAAGGCCAGAGATCGGGAGGACCTGATTGCAGGGATCGATGAGTTTCTGGACGAGGTGATCGTGCTCCCACCGGGGGAGTGGGACCCAAAGATCCGTATAGAACCACCGAAGAAGGTTCCCTCAGCAGATATGAGGAAGTCTGTTTACTCACTGAACGAGTTGGGCCAGGCGAACGGAACggcgggaggaggaggagcggtTGCTGATGATGAACAGATGCCGGCTCCTCATGAGTTAGGGGAGGAGCTGACCTTCACCGGGAGgTTTTGTGGAGGTCTTTGGCTGGATATTAAAAGGAAGATTCCGTGGTTGCTGAGTGATTTCTATGACGGCTTTCACATCCAGTCTATCTCCGCTGTTCTCTTCATCTATCTGGGGTGCATCACTAATGCCATCACTTTCGGAGGACTGTTAGGAGACGCCACTGATAACTACCAGGGGGTGATGGAGAGCTTCCTCGGTACGGCTCTGGCTGGAACGGTGTTCTGTCTGCTCGGTGGTCAGCCCCTCATCATCCTGAGCTCCACTGGACCCATACTGGTGTTTGAAAAGCTGCTGTATGAGTTCAGCAAGAACAACAACATCGACTACCTGGAGCTGCGTCTGTGGATCGGGCTGCACTCCTGCCTGCAGTGTCTGATCCTGGTGGTGTCGGACGCCAGCTTCATCATCAAGTACATGACCCGCTTCACCGAGGAGGGCTTCTCCAgcctcatctccttcatctTCATCTCCGACGCCATCAAGAAGATGGTGTCGTCCTTCCAGTACTACCCCATCAACATGAACTACAAGCCCGATTACATCACCACCTACAAGTGTGAATGCCTGGCTGCTGACCAAGtttctccAATGATTTTCAATTCTTCAGCTCAACTTCCCCAAGACAACCTCACTGATTACTCACTGTATAATTTCACAGGTCTGGACTGGTCTCAGCTCAGTAAGAAGGAGTGTCTGAAGCTCGGCGGGTCTCTGGTGGGAAAATCCTGTAAATACGTTCCTGATCTGGCTCTCCTGTCCTTCATCCTGTTCTTCGGCACGTACTCCATGACCATCTCGCTCAAGAAGTTCAAGTCCAGCCGCTACTTCCCCACCAAGTGCCGTACCCTGATCGCAGATTTTGCCATTATCATCTCCATCCTGGTCTTCTGTGGCCTGGATTATCTGATGTCCCTGGACACTCCTAAACTGCATGTCCCCACTGAGATCAAGCCGACCCGGCTGGACCGTGCCTGGGTGGTGATGCCGGTTGGGAAGAACCCGTGGTGGATGTACGTGGCCAGCTTTGTTCCTGCTCTCCTCGTCACCATCCTGATCTTTATGGATCAGCAGATCAGCGCCGTCATCGTCAACCGCAACGAGAACAAACTCAAGAAAGGCTGTGGGTATCATCTGGACCTGTTCTGGGTGGGCATCCTGATGGCGGTGTGTTCGTTTCTGGGTCTGCCCTGGTACGTCGCCGCCACCGTCATCTCCATCGCCCACATCGACTCTCTGAAGATGGAGAGCGAGTCCAGCGCCCCCGGAGAGCAGCCCCAGTTCCTCGGGGTCCGGGAGCAGAGGCTGACGGGTATTCTGGTGTTTGTTCTCACTGGACTCTCCATTTTTCTGGCTCCTGTACTGCAGTTCATCCCCATGCCTGTTCTCTACGGTGTGTTTCTGTACATGGGCGTCGCCTCTCTCAACGGCATTcagTTCTGGGAGAGGATTAAGCTGTTTCTGATGCCGGCTAAACACCAGCCGGACTTCGTATTCCTGCGGCACGTCCCGCTGCGCCGCGTCCACCTCTTCACCGTGGTGCAGATCACCTGCCTGGCCGTGCTCTGGATCCTCAAATCCACTGTAGCCGCCATCATCTTCCCCGTCATGATCCTGGGTCTGATGGTGGTGAGGAAGATGCTGGACCTGGTCTTCTCTCAGCATGACCTGGCCTGGCTGGACGACATCCTCCCCGACAAagacaagaagaagaaggaggacgagaagaagaagaaagagaagaagaaagccAAGAGTGGAGATCACGACAGCGATGAGGAGAATAATCACTGTTTTTCCATCCGAACCCCCATGGAGTCCGACTCAGACTACAGCATCCCTCACCACCTGAAGACCTCCTGTCCTCCCTCTTCAGTTCATCACCCCGCCCTCCGAGCGTACGACTTCGGCGTTCAGATGGAGCCTCGGTATGAAGAGCCTGGATTTTACCACCATCGCTTCTGTTCCACCGGCAGCGAGACCATGCTGTagagtaaaaaatacaaaatacatatttaaactgCAGTTCTGAGCTCTTCAAACCAGAACCTTTAATACAGAACACCTTTAACCAAAGATAAAAGAGGTTCATCCAGGTCCAGAAGCTTCTTCCCACGTTCTGAACCTGGATTAACCCTTTGCGTTTGGGTCAGGGTTAAAGATGTAGAGTacagacacacagcagagagagagacaggaggtAACACAGACACCAGAGCGTCCCtctccactccaccgtccaca

Function

NR:

description
PREDICTED: electrogenic sodium bicarbonate cotransporter 4-like isoform X2

GO: NA

KEGG:

id description
K13857 SLC4A5, NBC4; solute carrier family 4 (sodium bicarbonate cotransporter), member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680741.1 True 4453 mRNA 0.55 30 67586 108381

Neighbor

gene id symbol gene type direction distance location
LOC103028768 tpst2 coding upstream 41312 19230 ~ 26274 (+)
sez6l sez6l,LOC107741658,LOC107758626,LOC106568453 coding upstream 50892 2693 ~ 16694 (+)
LOC103026711 NA coding downstream 1314 109695 ~ 115637 (+)
LOC103027009 LOC108425225 coding downstream 13062 121443 ~ 127993 (+)
LOC103027926 cnnm4,LOC108277002 coding downstream 20652 129033 ~ 146195 (+)
LOC111194997 NA coding downstream 64624 173005 ~ 176594 (+)
LOC103026214 NA coding downstream 74762 183143 ~ 187140 (+)
G172118 tacr1b,LOC108425229,LOC107689601,LOC107741654,LOC107589026,LOC107579787 non-coding upstream 8353 57149 ~ 59233 (+)
G172099 NA non-coding upstream 49597 16902 ~ 17989 (+)
G172126 NA non-coding downstream 24072 132453 ~ 153485 (+)
G172136 NA non-coding downstream 36838 145219 ~ 203802 (+)
G172151 NA non-coding downstream 146925 255306 ~ 256401 (+)
G172161 NA non-coding downstream 190160 298541 ~ 450016 (+)
G172166 NA non-coding downstream 210914 319295 ~ 330527 (+)
G172120 LOC107706809,LOC108425229,LOC107577657,LOC107658568,LOC107721554,LOC107587419 other upstream 3017 63363 ~ 64569 (+)
LOC103028238 rps27a,ubb,scarb1,LOC107588960,LOC107658631,LOC107758624,LOC107567744 other upstream 16995 29536 ~ 50591 (+)
LOC103025596 purb,LOC108425219,LOC103372361,LOC107099159 other downstream 86745 195126 ~ 232335 (+)
LOC103039814 vdac2,LOC107704122 other downstream 327392 435773 ~ 482936 (+)
LOC103038248 NA other downstream 470942 579323 ~ 586198 (+)
LOC111194999 pitpnb,LOC108425199,LOC107602250,LOC107709228,LOC107706770,LOC107704163,LOC107653151 other downstream 735407 843788 ~ 866376 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other downstream 1275114 1383495 ~ 1544956 (+)

Expression


Co-expression Network