LOC103026214


Basic Information

Item Value
gene id LOC103026214
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 183143 ~ 187140 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680751.1
CGTTGGTTTCTGACTTGCGCAATTTTAGCACTTCCGTCAAGAATTTCCCAGTCCTTCCCTTTATAAACACTCAACCACCACCAGAACCAGCAGAaccagcagaagcagcagcagcagcagcagcagcactactgCACCAGCTCCACACCAGTAACCCACTCACACAGaaaaagaaaatagaaatggCAGACTTTGAACTGCAGATGTTGGAATGCTTGTCTGAGAGCGACAGCGCCTTCGAGTCCGATTTTGATGAACTGGATTGTTCTGACCCGCTGGCCATgAGCGGCCGGTGTGATCTCCACCGAGGGCTCCGGATCGAGATTTCCcagcatcctcacagcatgAGGAAGGTGGCGAACATCGTGATTGGCCTGCAGAGGCTGCAGAAGTTCCGACACGCTGAGAAAGTGTCTCGATCCACGGAGTTCACCGAGCACGAGCTGCTCAACATCATCCTGGAGAGCGTGGTGGAAGAGACGGTGGTGATGCGGCTGAGCTGTGATTCGCCGGTGACGTACAGTAAGCAGGATAAGGAGCTGCAGTGCACCGTGTGTGATAACCTGCAGAAGAGGCTGGTGCACAGCGAGGGAGACCCCTACCTGCTGGCCGTCACCCTGAagggaggaaaccagagtcaGAGCGtTCGCATGAACCTGTCGACCTATGCCTCCCCGTCCTGCAACTCCACAAAGGGTCAGCCGGTGTGTTTGGGAATCGCTAAGAGTAACCTGTACCTGTCCTGTACCGAGTCTGATTCTGGATCCCCTCACCTGAGCCTGGAGgAGGTGAAGAATAAAGAGGAGCTGAAGATGATCCGGGGGGAAGACGGGCTGAAGCGCTTCCTCTTCCTCCGCAGCGTTAAGGGCGGCTCGGTCAACACCTTCGAGTCGGCCCGGTTCCCCGGCTGGTTCATCAGCACGGCTACGGAGGACTACCAGCCCGTGGAGATGTGCGCCGAGGCCGACACCAGCCGCCAGCGGGTCTTCACGCTGCTGCCCTGAGCGCTCGAGTGAGCGGCGGTACCGGTTCCAGAGAGTATGGTAGTATGTACCGAGTACAGTTCTTACTCTGGAGACCGGCGCCGCGGAGCTCCCGGATCAGTTAGAGATTCTCACCCGAGAAGTAACGTTACTTCAGTTATAAGTGTAGGCCGAAATTCtggtgttttaatatattttataaatgaattttagtgtaatagtgtatagTTAGATGAGTGAAAGATAAGCTGATTATCGAAAGGCATAAAATTAAAGGTTaagtattactttattatttcattcatttacattttttattaaagtaaaaagaaaagactTTTTTCCACTGGCTGCAGCACAACCCCAAATCATGAtccatccacccccatgcttaacagttggtattaataataatcacagaGTTATATTGCTTAAAGTATCAGCCTATTTTCTACTCTCTTAGCTATTCACTAAAACAAATTCTGACCAgcgaaatatattttatattatatatttatgtatgctgtattaatgaaatgttatttaagttttttttatatatatttatttatgtgtgtttcTGCAAAACGTGTATTGAACACCAGTGtatttattatgaatttatttaatgtatttattttgtgcagatgTAAAcgtcaaaataaaaatgaagcaaATACA

Function

GO:

id name namespace
GO:0042742 defense response to bacterium biological_process
GO:0006955 immune response biological_process
GO:0043330 response to exogenous dsRNA biological_process
GO:0046685 response to arsenic-containing substance biological_process
GO:0032496 response to lipopolysaccharide biological_process
GO:1901222 regulation of NIK/NF-kappaB signaling biological_process

KEGG:

id description
K04519 IL1B; interleukin 1 beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680751.1 True 1664 mRNA 0.47 7 183143 187140

Neighbor

gene id symbol gene type direction distance location
LOC111194997 NA coding upstream 6549 173005 ~ 176594 (+)
LOC103027926 cnnm4,LOC108277002 coding upstream 36948 129033 ~ 146195 (+)
LOC103027009 LOC108425225 coding upstream 55150 121443 ~ 127993 (+)
LOC103026711 NA coding upstream 67506 109695 ~ 115637 (+)
LOC103042590 LOC108425226,LOC107706806,LOC107588954 coding upstream 74762 67586 ~ 108381 (+)
LOC103025911 NA coding downstream 2677 189817 ~ 192815 (+)
LOC111194996 LOC108425217 coding downstream 17031 204171 ~ 216693 (+)
LOC103041052 zfyve16,LOC107751709,LOC107665785,LOC107602218 coding downstream 56968 244108 ~ 274270 (+)
LOC103024445 LOC108425213,LOC107665780,LOC107602239,LOC107548990,LOC107731619,LOC107751766,LOC107704148 coding downstream 144882 332022 ~ 339082 (+)
hic2 hic2,LOC107665789,LOC107704150,LOC107548988,LOC107602240 coding downstream 165460 352600 ~ 371990 (+)
G172126 NA non-coding upstream 29658 132453 ~ 153485 (+)
G172130 NA non-coding upstream 98295 84384 ~ 84848 (+)
G172118 tacr1b,LOC108425229,LOC107689601,LOC107741654,LOC107589026,LOC107579787 non-coding upstream 123910 57149 ~ 59233 (+)
G172099 NA non-coding upstream 165154 16902 ~ 17989 (+)
G172151 NA non-coding downstream 68166 255306 ~ 256401 (+)
G172161 NA non-coding downstream 111401 298541 ~ 450016 (+)
G172166 NA non-coding downstream 132155 319295 ~ 330527 (+)
G172168 ube2l3,ube2l3b,ube2l3a,ub2l3,LOC106562742,LOC105014760,LOC107599129 non-coding downstream 155245 342385 ~ 349221 (+)
G172169 NA non-coding downstream 168903 356043 ~ 417595 (+)
LOC103042277 cnnm3 other upstream 16689 70622 ~ 166454 (+)
G172120 LOC107706809,LOC108425229,LOC107577657,LOC107658568,LOC107721554,LOC107587419 other upstream 118574 63363 ~ 64569 (+)
LOC103028238 rps27a,ubb,scarb1,LOC107588960,LOC107658631,LOC107758624,LOC107567744 other upstream 132552 29536 ~ 50591 (+)
LOC103025596 purb,LOC108425219,LOC103372361,LOC107099159 other downstream 7986 195126 ~ 232335 (+)
LOC103039814 vdac2,LOC107704122 other downstream 248633 435773 ~ 482936 (+)
LOC103038248 NA other downstream 392183 579323 ~ 586198 (+)
LOC111194999 pitpnb,LOC108425199,LOC107602250,LOC107709228,LOC107706770,LOC107704163,LOC107653151 other downstream 656648 843788 ~ 866376 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other downstream 1196355 1383495 ~ 1544956 (+)

Expression


Co-expression Network