LOC111194997


Basic Information

Item Value
gene id LOC111194997
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 173005 ~ 176594 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680752.1
TACTGCAGCTCCTCCACAGCACAACATCAGCTCTACCAGCTCCTCCAGAGCACTACAACAGCTCTACCCCAGCTTCACCAGCTCCACCAGAACTACAACAACTCCAAcagctcctccagctcctccgcAGCACTTCACAAGCTTCACCAGCCTTACCAGCACTACAACAACTCCTCCAGCTCCATCAGCTTCAACAGCTCTACTGAACACTTCTCACCactttctttatttactttattcagtattaatatagaGATGGAAGACGCCCGCATGCTGCTGCTGGAATGctcctctgaGAGCGACAGCACATTCGAGTCTGATGAGATGGATTTTGATGAACTGGACTGTTCTGACCCGCTGGCCATGAGCGGCCGGTGTGATCTCCACCGAGGGCTCCGGATCGAGATTTCCcagcatcctcacagcatgAGGAAGGTGGCGAACATCGTGATTGGCCTGCAGAGGCTGCAGAAGTTCCGACACGCTGAGAAAGTGTCTCGATCCACGGAGTTCACCGAGCACGAGCTGCTCAACATCATCCTGGAGAGCGTGGTGGAAGAGACGGTGGTGATGCGGCTGAGCTGTGATTCGCCGGTGACGTACAGTAAGCAGGATAAGGAGCTGCAGTGCACCGTGTGTGATAACCTGCAGAAGAGGCTGGTGCACAGCGAGGGAGACCCCTACCTGCTGGCCGTCACCCTGAagggaggaaaccagagtcaGAGCGTTCGCATAAACCTGTCGACCTATGCCTCCCCGTCCTGCAACTCCACAAAGGGTCAGCCGGTGTGTTTGGGAATCGCTAAGAGTAACCTGTACCTGTCCTGTACCGAGTCTGATTCTGGATCCCCTCACCTGAGCCTGGAGgAGGTGAAGAATAAAGAGGAGCTGAAGATGATCCGGGGGGAAGACGGGCTGAAGCGCTTCCTCTTCCTCCGCAGCGTTAAGGGCGGCTCGGTCAACACCTTCGAGTCGGCCCGGTTCCCCGGCTGGTTCATCAGCACGGCTACGGAGGACGACCAGCCCGTGGAGATGTGCGGCGAGGCCGACACCAGCCGCCAGCGGGTCTTCACGCTGCTGCCCTGAGCGCTCGAGTGAGCGGCGGTACCGGTTCCAGAGAGTATGGTAGTATGTACCGAGTACAGTTCTTACTCTGGAGACCGGCGCCGCGGAGCTCCCGGATCAGTTAGAGATTCTCACCCGAGAAGTAACGTTACTTCAGTTATAAGTGTAG

Function

GO:

id name namespace
GO:0042742 defense response to bacterium biological_process
GO:0006955 immune response biological_process
GO:0043330 response to exogenous dsRNA biological_process
GO:0046685 response to arsenic-containing substance biological_process
GO:0032496 response to lipopolysaccharide biological_process
GO:1901222 regulation of NIK/NF-kappaB signaling biological_process

KEGG:

id description
K04519 IL1B; interleukin 1 beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680752.1 True 1234 mRNA 0.56 6 173005 176594

Neighbor

gene id symbol gene type direction distance location
LOC103027926 cnnm4,LOC108277002 coding upstream 26810 129033 ~ 146195 (+)
LOC103027009 LOC108425225 coding upstream 45012 121443 ~ 127993 (+)
LOC103026711 NA coding upstream 57368 109695 ~ 115637 (+)
LOC103042590 LOC108425226,LOC107706806,LOC107588954 coding upstream 64624 67586 ~ 108381 (+)
LOC103028768 tpst2 coding upstream 146731 19230 ~ 26274 (+)
LOC103026214 NA coding downstream 6549 183143 ~ 187140 (+)
LOC103025911 NA coding downstream 13223 189817 ~ 192815 (+)
LOC111194996 LOC108425217 coding downstream 27577 204171 ~ 216693 (+)
LOC103041052 zfyve16,LOC107751709,LOC107665785,LOC107602218 coding downstream 67514 244108 ~ 274270 (+)
LOC103024445 LOC108425213,LOC107665780,LOC107602239,LOC107548990,LOC107731619,LOC107751766,LOC107704148 coding downstream 155428 332022 ~ 339082 (+)
G172126 NA non-coding upstream 19520 132453 ~ 153485 (+)
G172130 NA non-coding upstream 88157 84384 ~ 84848 (+)
G172118 tacr1b,LOC108425229,LOC107689601,LOC107741654,LOC107589026,LOC107579787 non-coding upstream 113772 57149 ~ 59233 (+)
G172099 NA non-coding upstream 155016 16902 ~ 17989 (+)
G172151 NA non-coding downstream 78712 255306 ~ 256401 (+)
G172161 NA non-coding downstream 121947 298541 ~ 450016 (+)
G172166 NA non-coding downstream 142701 319295 ~ 330527 (+)
G172168 ube2l3,ube2l3b,ube2l3a,ub2l3,LOC106562742,LOC105014760,LOC107599129 non-coding downstream 165791 342385 ~ 349221 (+)
G172169 NA non-coding downstream 179449 356043 ~ 417595 (+)
LOC103042277 cnnm3 other upstream 6551 70622 ~ 166454 (+)
G172120 LOC107706809,LOC108425229,LOC107577657,LOC107658568,LOC107721554,LOC107587419 other upstream 108436 63363 ~ 64569 (+)
LOC103028238 rps27a,ubb,scarb1,LOC107588960,LOC107658631,LOC107758624,LOC107567744 other upstream 122414 29536 ~ 50591 (+)
LOC103025596 purb,LOC108425219,LOC103372361,LOC107099159 other downstream 18532 195126 ~ 232335 (+)
LOC103039814 vdac2,LOC107704122 other downstream 259179 435773 ~ 482936 (+)
LOC103038248 NA other downstream 402729 579323 ~ 586198 (+)
LOC111194999 pitpnb,LOC108425199,LOC107602250,LOC107709228,LOC107706770,LOC107704163,LOC107653151 other downstream 667194 843788 ~ 866376 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other downstream 1206901 1383495 ~ 1544956 (+)

Expression


Co-expression Network