Gene
RNA
| Item | Value |
|---|---|
| gene id | G69497 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000012 |
| NCBI id | null |
| chromosome length | 13770000 |
| location | 1204309 ~ 1204539 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU79270 | True | 231 | lncRNA | 0.35 | 1 | 1204309 | 1204539 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000012_01139864_01192154 | TTC7A | coding | downstream | 12155 | 1135676 ~ 1192154 (-) |
| CI01000012_01032204_01034843 | NA | coding | downstream | 169466 | 1031969 ~ 1034843 (-) |
| CI01000012_00955355_00975846 | THADA | coding | downstream | 228429 | 955355 ~ 975880 (-) |
| CI01000012_00904582_00908136 | NA | coding | downstream | 294791 | 904451 ~ 909518 (-) |
| CI01000012_00866804_00867133 | NA | coding | downstream | 337176 | 865985 ~ 867133 (-) |
| CI01000012_01240945_01242653 | SOCS5, SOCS5B | coding | upstream | 35978 | 1240517 ~ 1242653 (-) |
| CI01000012_01256938_01257273 | PRKCE | coding | upstream | 51178 | 1255717 ~ 1257273 (-) |
| CI01000012_01489297_01490202 | CDC42EP3 | coding | upstream | 284291 | 1488830 ~ 1490313 (-) |
| CI01000012_01601665_01604244 | CYP1B1 | coding | upstream | 397115 | 1601654 ~ 1604353 (-) |
| CI01000012_01677949_01691893 | POLR1B | coding | upstream | 473365 | 1677904 ~ 1692036 (-) |
| G69314 | NA | non-coding | downstream | 86199 | 1116902 ~ 1118110 (-) |
| G69444 | NA | non-coding | downstream | 131136 | 1072968 ~ 1073173 (-) |
| G69360 | NA | non-coding | downstream | 397522 | 806510 ~ 806787 (-) |
| G69357 | NA | non-coding | downstream | 401169 | 802919 ~ 803140 (-) |
| G69342 | NA | non-coding | downstream | 414909 | 789053 ~ 789400 (-) |
| G69498 | NA | non-coding | upstream | 636 | 1205175 ~ 1205413 (-) |
| G69508 | NA | non-coding | upstream | 11897 | 1216436 ~ 1216672 (-) |
| G69509 | NA | non-coding | upstream | 12912 | 1217451 ~ 1217756 (-) |
| G69545 | NA | non-coding | upstream | 98961 | 1303500 ~ 1361825 (-) |
| G69517 | NA | non-coding | upstream | 120377 | 1324916 ~ 1330508 (-) |
| G69332 | NA | other | downstream | 428430 | 775364 ~ 775879 (-) |
| G69277 | NA | other | downstream | 473844 | 729920 ~ 730465 (-) |
| G69161 | NA | other | downstream | 616294 | 587604 ~ 588015 (-) |
| G69150 | NA | other | downstream | 637353 | 565463 ~ 566956 (-) |
| G69562 | NA | other | upstream | 127536 | 1332075 ~ 1376298 (-) |
| G70774 | NA | other | upstream | 1661969 | 2866508 ~ 2866892 (-) |
| G71898 | NA | other | upstream | 3328991 | 4533530 ~ 4534672 (-) |
| G72068 | NA | other | upstream | 3571681 | 4776220 ~ 4780132 (-) |
| G72204 | NA | other | upstream | 4089234 | 5293773 ~ 5302206 (-) |
