LOC103038879


Basic Information

Item Value
gene id LOC103038879
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 536293 ~ 541770 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680770.1
TTTTGTGTATGATGATTGTGTTGCAGTTGGCTCGGCGGTATGGGGATGTGTTCAGTCTGTATATCGGCAGGAAGCCGGCGGTGGTGCTGTACGGGCTCCGGGCGGTGAAGGAGGCGCTGGTGGTTCGGGGGGTGGATTTCGCCGGCAGACCTCAGGGGCTCATGCTGAACCACGTCACCGAGAACAAGGGTCTGATTATGGCTAATTATGGTTCAGTTTGGAAGGAGCACAGAAGGTTTGCTCTGATGAGTCTGAAGAACTTCGGTTTGGGGAGGCAGTTTATGGAGGAGAGAATTCTGCAGGAGACCAAACACATCTGCCAACATCTGCAGAACAGATCAGGAAATCTGGTAGATCCTCAGCCCGTGATCCACAGCGCTGCGTCCAACATCATCAGCTCCATATTGTTCGGGACTCGATATGAATATGATGATGAAGTTCTCGCTTTTATCATCAACAGCTTTAAAGAAAACGCCAGGAAAGCTAACAGCGCGTGGGCCGTGATTTATGATTCCTTTCCTTTCCTGAGGCACCTGCCGCTGCCGTTTCGGAAAGTGTTTGAGAACTATGAGGCTCTGAAATCTCACACCAGGAGGATCATCGCCGATCACAAGAAGAGCAGGACCTCCGGAGAACCGCGGGACATCATCGACTGCTACCTCGATGAAATGGAAAAGgCGGATGAGGACACCTCGCTGGACGAGGACAGATTAGTGATGTTCCTGCTGGATCTTCATTTTGCTGGAACAGACACCACGTCCAACACCGTCCTCACCGCTCTGCTGTACCTCGCCGTGTACAGAGATATACAGGCTCTCTGCCAGCAGGAGATCGACGCTGTACTGCAGGATAAAGAGCAGGTCTCGTTTGAGGACAGGCAGCAGATGCCGTTTGTGCAGGCCACCATCCACGAGCTCCAGCGCCTGGCCAACATCGCGCCGCTGGGCGTCTTCCATTCCACCACCAGGAACACGCAGCTAATGGGCTACGACGTCCCGGAGGGCACGCTGGTGATTACCAACCTTACATCTGTTCTGTTTGAGCGCAGTCAGTGGGCACAACCTAATCACTTCAACCCCTCACACTTCCTGAACCAGCGAGGGGAATTCATGAAGCCTGAGGCCTTCCTGGccttctctgcaggTCCTCGAGTGTGTCTGGGTGAAGCTCTGGCCCGGATGGAGCTGTTTCTGATTCTGGTCACGCTCCTCCGCCGCTTTCACTTGGCGTGGCCCGAGGCCTGCGGGGGTCCCGACCTCCGGCCCGTGTTCGGGGGGGATACAGGCTCCCAGGCCCTACAGCATCACTGTCACACCGCGGAGATACCACGGCAACCACGGGGCTTCTGCTGGACACGCCAGCTGAATTTAAATCATAGAGAACTCTGGGTTTTTCTATTCTGTGATGGTTAataagtgagtgtgagagagagcctacacttcagcataaataaaaactcTGTAAGGGTGATGCTGTATTATATCACTTAATAAAACTACTAATGcatcaccaggctctgtaaactTTGTCAAGTTATTAAT

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680770.1 True 1541 mRNA 0.53 8 536293 541770

Neighbor

gene id symbol gene type direction distance location
ptpn11 ptpn11,ptpn11a coding upstream 4468 514237 ~ 531825 (+)
brap brap,LOC107706763,LOC107712082 coding upstream 64872 460448 ~ 471421 (+)
hic2 hic2,LOC107665789,LOC107704150,LOC107548988,LOC107602240 coding upstream 164303 352600 ~ 371990 (+)
LOC103024445 LOC108425213,LOC107665780,LOC107602239,LOC107548990,LOC107731619,LOC107751766,LOC107704148 coding upstream 197211 332022 ~ 339082 (+)
LOC103041052 zfyve16,LOC107751709,LOC107665785,LOC107602218 coding upstream 262023 244108 ~ 274270 (+)
LOC103038565 LOC108425201 coding downstream 2010 543780 ~ 575333 (+)
LOC103037605 ttc28,LOC107602249,LOC107588927,LOC107704161 coding downstream 47117 588887 ~ 837920 (+)
LOC103021728 NA coding downstream 327761 869531 ~ 878891 (+)
LOC111195000 LOC108425194,LOC107653585,LOC107704125,LOC108277218,LOC107709189,LOC107602252 coding downstream 522962 1064732 ~ 1089090 (+)
LOC103035435 LOC108425189,LOC108276927,LOC107706776,LOC107554527 coding downstream 975592 1517362 ~ 1532769 (+)
G172215 ddx55 non-coding upstream 30201 504665 ~ 506092 (+)
G172198 NA non-coding upstream 47713 472033 ~ 488580 (+)
G172169 NA non-coding upstream 118698 356043 ~ 417595 (+)
G172266 NA non-coding downstream 222856 764626 ~ 822760 (+)
G172273 NA non-coding downstream 280697 822467 ~ 876253 (+)
G172276 NA non-coding downstream 312180 853950 ~ 858287 (+)
G172462 NA non-coding downstream 448864 990634 ~ 990838 (+)
G172464 NA non-coding downstream 458338 1000108 ~ 1000519 (+)
LOC103039814 vdac2,LOC107704122 other upstream 53357 435773 ~ 482936 (+)
LOC103025596 purb,LOC108425219,LOC103372361,LOC107099159 other upstream 303958 195126 ~ 232335 (+)
LOC103042277 cnnm3 other upstream 369839 70622 ~ 166454 (+)
G172120 LOC107706809,LOC108425229,LOC107577657,LOC107658568,LOC107721554,LOC107587419 other upstream 471724 63363 ~ 64569 (+)
LOC103028238 rps27a,ubb,scarb1,LOC107588960,LOC107658631,LOC107758624,LOC107567744 other upstream 485702 29536 ~ 50591 (+)
LOC103038248 NA other downstream 37553 579323 ~ 586198 (+)
LOC111194999 pitpnb,LOC108425199,LOC107602250,LOC107709228,LOC107706770,LOC107704163,LOC107653151 other downstream 302018 843788 ~ 866376 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other downstream 841725 1383495 ~ 1544956 (+)
G172517 NA other downstream 965550 1507320 ~ 1542151 (+)
G172552 NA other downstream 1085029 1626799 ~ 1628805 (+)

Expression


Co-expression Network