LOC103038565 (LOC108425201)


Basic Information

Item Value
gene id LOC103038565
gene name LOC108425201
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 543780 ~ 575333 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680771.1
TGGAGAGCGGTGAACTGGGCGGATTAGCGCGAGCTCATCTCCTCTCTGCTGCGCGAGACCGCGGTGCTGGAGGAGATAACGGGTCAGGGAGCATCTTCACAGAGCAGGCGGCTGTAGGACAGCAGGACGGACGGTGGGATGTACGCTGGACAGATGCAGTGTTCTGGAGCTGAGGATCTGACGGATGAGGAGAAGGAGATCATTAACAGTGTTCTGGCCCGAGCCGAGATGATGGAGGCCATGGAGCAGGAGCGGATTGGGCATCTGGTGAATCGGTTGGACAGAATGAAGCAGACGGCGTGTGGTGACGGACACTCGCGCTGTCTGCACTGCGGACAGCAGTTCAGCATGATGGGAGTCAGCGCCGTCACGTGTGAGGAGTGCAAGAAGAACATGTGCAGTAAGTGTGGGATTCGCAGTAACAGCCGCTCCTGTCCTGCATGGCTGTGCAAAATCTGCAGCGAACACAAGGAGATGCTGAAGCGATCCGGAGCCTGGTTCTTTAAGGGGTTACCCCAGCAGGTCCTGCCCTCACCCTTACCCATCACCAAGCACCTCACCCACACCCCTGCAGCTCCATATTCCAACTCACAGAATGGAGacaGCGGGCAGCTTCTCGACAGAGGGCAGCACAGGGCAGCAGAACTGAAGCTTCCTGAGCAGAACGAGCAAAAAATCACCGTCCAGAACCAGCAGGTGACGGGCGGAGCCAGACCCACCGAGACCAGGAGCTCCGGACAGACCCAGGAACCCGCAGACAGACGGACCGAGCAGAACTCTGAACCATCAACCACACCTTCTACTACCAGCCTCACTCacagagTTGAAACTCTTCACCTGGAGAAGGACGTCCCGCCGGCGGAGAACAGGGCGATACCCAACATGCAGAAGGAGACGAGGCCCTCGTTAGTGACCGGCGCCCCCGCGGTACGCCAGGCCCCGCCCCCCGCCACCACTGCTGCCACTACCGCTGCCACCGAGGAGGAGGAAGACGCCAACAGCTACGACTCTGATGATGCCACCACGCTGGGGATGCTGGAGTTCAGTCTGCTGTACGAGGAGGAGAACAGCGCTCTGCACTGCAACATCATCAGAGCCAAGGGCCTGAAACCGATGGACTCCAACGGACTGGCTGATCCATACGTTAAACTGCATTTACTTCCTGGAGCCAGCAAGtcCAACAAGCTCCGCACCAAGACTCTCTACAACACCCTGAATCCAGCCTGGAACGAGACCCTGGTCTACCATGGCATCACCAACGAGGACATGCAGAGGAAAACCCTCagACTGTCGGTGAGTGATGAGGACAAGTTCGGACATAATGAGTTCATCGGAGAGACGCGGGTGGTCCTGAAGAAGCTGAAGCTCAATCAGAAGAAGAACTACAGCGTGTGTTTGGAGCGAGTGGTGCCGGTGAAGCGAGTCGCTGCTGGAGGGTCGGTGCGCGGTATGGCTTTGTATGAAGAggagGTAAAGGAAGGTGAGGATGCGGAGGAGCGAGGTCGTATTCTGGTGTCGCTCACGTATAACAGCCAGTCCGGCCGGCTCATTGTTGGCATCATTCGCTGTGCCCATCTGGCTGCTATGGACTCCAATGGCTACTCCGACCCTTTCGTCAAAATATGCCTGAAGCCAGACATGGGGAAGAAAGCTAAGAATAAAACCCAGATCAAGAAGAAGACCCTGAACCCTGAGTATAATGAGGAGTTCAGCTATGAGATCAAGCATGGAGAACTGGCCAAGAAGACTCTGGATATCTCAGTGTGGGATTACGACATGGGGAAATCCAATGATTTCATAGGTGGATGCCAGCTTGGCATCACAGCTAAAGGAGAATGCCTGAAGCATTGGTACGAGTGCCTGAAGAACAAAGATAAGAAGATCGAGCgctggcatgttctcttccaccagaaCAACATGGAGGCTGAAGCTGACTGAGCCACGCCCACTTCCTGCCTGATCTCTGTGACTCCATACCATCCTGTCTTCCTCtctacccccctccccccctccaccGACACTGTGTTATTAATAAGACTCTGTTTTAAATTCTGTTCTGAGGGTCCAAGAGTCTGAGACCACTGAtagaaatctatattttacattattttatgtattcaaagtatttttcccttttttttttttacaaatgtgatTATTTCTCACAAAATATGGCTATATTTGTTTAAACATGACGTTTAAAGTATGTCAAATACTAGTCATGTCTTCGCTGATTGACTATATTTGGGTTCAGTTATaagttatgttcattttatgaTTATCGTCACTTGCTATCATTGTTAGAATTCGTAAAATTCtacatatttaatttcattgtgTTCTCAGACTTTTGTACCTCACTGTATGCAGTTGGTATTGCGTGGTGGGTAATCTCAATATATCGTCCATGTTGGTGACTTGGGGTTATATTCCTGTATGAGAAAGCAAACTGCGCTAAGGCTGCCcgatattggggaaaaaataacattgcgatacttttttctgcaatatatatatgtatatatacagtaccagtcaaaaaag
>XM_022680772.1
TGGAGAGCGGTGAACTGGGCGGATTAGCGCGAGCTCATCTCCTCTCTGCTGCGCGAGACCGCGGTGCTGGAGGAGATAACGGGTCAGGGAGCATCTTCACAGAGCAGGCGGCTGTAGGACAGCAGGACGGACGGTGGGATGTACGCTGGACAGATGCAGTGTTCTGGAGCTGAGGATCTGACGGATGAGGAGAAGGAGATCATTAACAGTGTTCTGGCCCGAGCCGAGATGATGGAGGCCATGGAGCAGGAGCGGATTGGGCATCTGGTGAATCGGTTGGACAGAATGAAGCAGACGGCGTGTGGTGACGGACACTCGCGCTGTCTGCACTGCGGACAGCAGTTCAGCATGATGGGAGTCAGCGCCGTCACGTGTGAGGAGTGCAAGAAGAACATGTGCAGTAAGTGTGGGATTCGCAGTAACAGCCGCTCCTGTCCTGCATGGCTGTGCAAAATCTGCAGCGAACACAAGGAGATGCTGAAGCGATCCGGAGCCTGGTTCTTTAAGGGGTTACCCCAGCAGGTCCTGCCCTCACCCTTACCCATCACCAAGCACCTCACCCACACCCCTGCAGCTCCATATTCCAACTCACAGAATGGAGacaGCGGGCAGCTTCTCGACAGAGGGCAGCACAGGGCAGAACTGAAGCTTCCTGAGCAGAACGAGCAAAAAATCACCGTCCAGAACCAGCAGGTGACGGGCGGAGCCAGACCCACCGAGACCAGGAGCTCCGGACAGACCCAGGAACCCGCAGACAGACGGACCGAGCAGAACTCTGAACCATCAACCACACCTTCTACTACCAGCCTCACTCacagagTTGAAACTCTTCACCTGGAGAAGGACGTCCCGCCGGCGGAGAACAGGGCGATACCCAACATGCAGAAGGAGACGAGGCCCTCGTTAGTGACCGGCGCCCCCGCGGTACGCCAGGCCCCGCCCCCCGCCACCACTGCTGCCACTACCGCTGCCACCGAGGAGGAGGAAGACGCCAACAGCTACGACTCTGATGATGCCACCACGCTGGGGATGCTGGAGTTCAGTCTGCTGTACGAGGAGGAGAACAGCGCTCTGCACTGCAACATCATCAGAGCCAAGGGCCTGAAACCGATGGACTCCAACGGACTGGCTGATCCATACGTTAAACTGCATTTACTTCCTGGAGCCAGCAAGtcCAACAAGCTCCGCACCAAGACTCTCTACAACACCCTGAATCCAGCCTGGAACGAGACCCTGGTCTACCATGGCATCACCAACGAGGACATGCAGAGGAAAACCCTCagACTGTCGGTGAGTGATGAGGACAAGTTCGGACATAATGAGTTCATCGGAGAGACGCGGGTGGTCCTGAAGAAGCTGAAGCTCAATCAGAAGAAGAACTACAGCGTGTGTTTGGAGCGAGTGGTGCCGGTGAAGCGAGTCGCTGCTGGAGGGTCGGTGCGCGGTATGGCTTTGTATGAAGAggagGTAAAGGAAGGTGAGGATGCGGAGGAGCGAGGTCGTATTCTGGTGTCGCTCACGTATAACAGCCAGTCCGGCCGGCTCATTGTTGGCATCATTCGCTGTGCCCATCTGGCTGCTATGGACTCCAATGGCTACTCCGACCCTTTCGTCAAAATATGCCTGAAGCCAGACATGGGGAAGAAAGCTAAGAATAAAACCCAGATCAAGAAGAAGACCCTGAACCCTGAGTATAATGAGGAGTTCAGCTATGAGATCAAGCATGGAGAACTGGCCAAGAAGACTCTGGATATCTCAGTGTGGGATTACGACATGGGGAAATCCAATGATTTCATAGGTGGATGCCAGCTTGGCATCACAGCTAAAGGAGAATGCCTGAAGCATTGGTACGAGTGCCTGAAGAACAAAGATAAGAAGATCGAGCgctggcatgttctcttccaccagaaCAACATGGAGGCTGAAGCTGACTGAGCCACGCCCACTTCCTGCCTGATCTCTGTGACTCCATACCATCCTGTCTTCCTCtctacccccctccccccctccaccGACACTGTGTTATTAATAAGACTCTGTTTTAAATTCTGTTCTGAGGGTCCAAGAGTCTGAGACCACTGAtagaaatctatattttacattattttatgtattcaaagtatttttcccttttttttttttacaaatgtgatTATTTCTCACAAAATATGGCTATATTTGTTTAAACATGACGTTTAAAGTATGTCAAATACTAGTCATGTCTTCGCTGATTGACTATATTTGGGTTCAGTTATaagttatgttcattttatgaTTATCGTCACTTGCTATCATTGTTAGAATTCGTAAAATTCtacatatttaatttcattgtgTTCTCAGACTTTTGTACCTCACTGTATGCAGTTGGTATTGCGTGGTGGGTAATCTCAATATATCGTCCATGTTGGTGACTTGGGGTTATATTCCTGTATGAGAAAGCAAACTGCGCTAAGGCTGCCcgatattggggaaaaaataacattgcgatacttttttctgcaatatatatatgtatatatacagtaccagtcaaaaaag

Function

NR:

description
PREDICTED: rabphilin-3A-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680771.1 True 2544 mRNA 0.51 17 543780 575333
XM_022680772.1 False 2541 mRNA 0.51 17 543780 575333

Neighbor

gene id symbol gene type direction distance location
LOC103038879 NA coding upstream 2010 536293 ~ 541770 (+)
ptpn11 ptpn11,ptpn11a coding upstream 11955 514237 ~ 531825 (+)
brap brap,LOC107706763,LOC107712082 coding upstream 72359 460448 ~ 471421 (+)
hic2 hic2,LOC107665789,LOC107704150,LOC107548988,LOC107602240 coding upstream 171790 352600 ~ 371990 (+)
LOC103024445 LOC108425213,LOC107665780,LOC107602239,LOC107548990,LOC107731619,LOC107751766,LOC107704148 coding upstream 204698 332022 ~ 339082 (+)
LOC103037605 ttc28,LOC107602249,LOC107588927,LOC107704161 coding downstream 13554 588887 ~ 837920 (+)
LOC103021728 NA coding downstream 294198 869531 ~ 878891 (+)
LOC111195000 LOC108425194,LOC107653585,LOC107704125,LOC108277218,LOC107709189,LOC107602252 coding downstream 489399 1064732 ~ 1089090 (+)
LOC103035435 LOC108425189,LOC108276927,LOC107706776,LOC107554527 coding downstream 942029 1517362 ~ 1532769 (+)
LOC103046457 kmt5a,LOC108425183 coding downstream 1081773 1657106 ~ 1661821 (+)
G172215 ddx55 non-coding upstream 37688 504665 ~ 506092 (+)
G172198 NA non-coding upstream 55200 472033 ~ 488580 (+)
G172169 NA non-coding upstream 126185 356043 ~ 417595 (+)
G172266 NA non-coding downstream 189293 764626 ~ 822760 (+)
G172273 NA non-coding downstream 247134 822467 ~ 876253 (+)
G172276 NA non-coding downstream 278617 853950 ~ 858287 (+)
G172462 NA non-coding downstream 415301 990634 ~ 990838 (+)
G172464 NA non-coding downstream 424775 1000108 ~ 1000519 (+)
LOC103039814 vdac2,LOC107704122 other upstream 60844 435773 ~ 482936 (+)
LOC103025596 purb,LOC108425219,LOC103372361,LOC107099159 other upstream 311445 195126 ~ 232335 (+)
LOC103042277 cnnm3 other upstream 377326 70622 ~ 166454 (+)
G172120 LOC107706809,LOC108425229,LOC107577657,LOC107658568,LOC107721554,LOC107587419 other upstream 479211 63363 ~ 64569 (+)
LOC103028238 rps27a,ubb,scarb1,LOC107588960,LOC107658631,LOC107758624,LOC107567744 other upstream 493189 29536 ~ 50591 (+)
LOC103038248 NA other downstream 3990 579323 ~ 586198 (+)
LOC111194999 pitpnb,LOC108425199,LOC107602250,LOC107709228,LOC107706770,LOC107704163,LOC107653151 other downstream 268455 843788 ~ 866376 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other downstream 808162 1383495 ~ 1544956 (+)
G172517 NA other downstream 931987 1507320 ~ 1542151 (+)
G172552 NA other downstream 1051466 1626799 ~ 1628805 (+)

Expression


Co-expression Network