LOC103037605 (ttc28,LOC107602249,LOC107588927,LOC107704161)


Basic Information

Item Value
gene id LOC103037605
gene name ttc28,LOC107602249,LOC107588927,LOC107704161
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 588887 ~ 837920 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680773.1
gagagagagagagagagaaagagagagagagagagttaggagGAAAAAACGCGAGAAAAGCGGATTTGACAACATGGCGAACTTTCCCCGGACTGACTCTGTTCTGAGGAGCTGCTGAGCGGTTCTGCTCGGTTCTGTTCGGTTCTGATCTGTGTTCCTCTGCTCGGTTCCAGCAGCGCGGCGGTCCGGAGGTCCGGAGGGTTCGGGAGCTCCGCCGCGGCCTGCTTTTCTCCTCGGTTCGGACGGAAAGTTTATGATGGGCTGAAAGTTTGGGTCGCTGCCGGAATCCCGAACAGGACAGGATGGAGAAACAGGGCGCGAGAAGAGAGAAGTTTTCGCTGTTTGGGCCCCGGGCGCTGGGCAGGGCGGTGCACGCGGCGGCCGAGGGTCCCGGTCTGAGCAAGGCCGAGTTCATGGAGAAAGTGCGGCGGAGTAACGAGGCGTGCCAGCGGGGAGACTTCCAGACGGCCGTGAAGCTTTACGGAGAGGCTCTGCGGGCCGACCCACAGAACTGCATCCTCTACAGCAACCGCTCGGCTGCCCACCTCAAACTGGGCCAGTATCAGACTGCCCTGGACGACGCAGTGAAGGCACGGCTCCTCAACCCCAAGTGGCCAAAGgCGTACTTCCGACAGGGTGTTGCCCTCCAGTACCTGGGTCGGCACGCAGATGCCCTGGCTGCGTTCGCCTCGGGTCTGGCCCAGGACCCCAAGAGCCTGCAGCTGCTGGTCGGCATGGTGGAGGCCGCCATGAAGTCGCCACTACGAGAATCTCTGGAGCCCACCTATCAGCAGCTGCAGAAGATGAAGCTGGACAAGAGCCCGTTTGTGGTGGTGTCGGTCATCGGCCAGGAGCTGCTGACCGCCTCCCACCACGGCGCTTCTGTGGTGGTTCTGGAGGCGGCGCTGAAGATCGGTACCTGCAGCCTGAAGCTCCGCGGCTCGGTGTTCTCCGCCCTCAGCAGCGCCTACTGGTCACTGGGCAACACGGAGAAGAGCACGGGGTACATGCAGCAAGACCTGGAGGTGGCCAAGACTTTAGGTGACCAGACGGGCGAGTGCAGGGCTCACGGGAACCTGGGGTCAGCCTTCTTCTCCAAGGGCAATTACCGCGAGGCCCTGACCAACCACAGACACCAGCTCGTCCTGGCCATGAAGCTGAAGGACAGAGAGGCGGCGTCGTCGGCGCTCAGCAGCCTGGGCCACGTCTACACGGCGATTGGCGACTACCCCAACGCCCTGGCCAGCCACAAGCAGTGCGTCCTGCTGGCCAAGCAGTCCAAGGACCAGCTGGCAGAAGCTCGCGAGTTGGGCAACATGGGCGCCGTCTACATCGCCATGGGGGACTTCGACAACGCCGTGCAGTGCCACGAGCAGCACCTGGGCATCGCCAAGGCTCTGGGCGATAAGCGCGAGGAGGCGCGCGCCTACAGCAACCTGGGCAGCGCCTACCACTACCGCCGCAACTTTGACAAGGCCATGTCCTACCACACCCACGTGCTGGAGCTGGCAcaggagctggaggagaagCCCATCGAGATGCGGGCGTACGCCGGCCTGGGCCACGCTGCCCGCTGCATGCAGGACCTGGAGCGCGCCAAACAGTACCACGAGCAGCAGCTCAGCATCGCCGAGGGCCTAAAGGACCGCGCCGCCGAGGGACGCGCCTCCTCAAACCTGGGAATAATCCACCAGATGAAAGGAGATTACGAGACGGCTTTGAAGCTGCACAAAGCTCACCTCTCCATTGCCCAGGAGCTGAACGACTACGCTGCCCAGGGCAGGGCCTACGGCAACATGGGCAACGCTTACAACGCTCTCGGCGCCTTCGACCAGGCTGTGCGCTACCACCGGCAGGAGCTGCAAATCTCCATGGAGGTCAACGATCGTGCCTCGCAGGCCTCCACCCACGGCAATCTGGCCGTGGCCTACCAAGCCCTGGGGGCTCATGATCGAGCCCTGCAGCACTACCAGAACCACTTGAACATTGCCCGCGAGCTACGCGACATCCAGAGCGAGGCCCGGGCCCTGGGGAACCTGGGGAACTTCCACTGCTCGCGGGGCGAGTTCCCTCAAGCCGTGCCCTACTACGAGCAGTACTTGCGGCTCTCGCCTGACCTCCAGGACATGGAAAGCGAGGGCAAGATCTGCCACAACCTGGGCTACGCCCATTATTGCCTGGGCAGTTTCCAGGAAGCAGTAAAGTACTACGAGCAGGACCTGGCACTGGCCAAAGATCTGCACGATAAGTTGAGTCAAGCCAAAGCCTACTGCAACCTGGGCCTGGCCTTCAAAGCCCTGGGTGACTACAACAAGGCCGAAGAGTGCCAGAAGTACCTTTTATCTTTGGCCCAGTCGCTAAACAACTCGCAGGCCAGGTTCCGCGCTCTGGGAAACCTTGGCGACATCTTCCTCTGCAAAAAGGACGTACCCGGTGCAATCAAGTTCTACGAGCAACAGCTGGCACTGGCGCATCAAGTCAAGGAACGTAAGATGGAGGCCAATGCTTACGCTGCTTTAGGGGCTGCATACCGGATGCTGCAGAAGTACGATAAGGCTCTTGGATACCACACGCAGGAACTGGAGGTATACCAGGAGCTTGGGGACAGCCAGGGAGAGTGCCAGGCTCACGGGCACCTCGCGGCTGTCTACATGTCCCTGGGGAAGTACAGCATGGCCTTCAAGTGCTATGAGGAGCAGCTGGAGCTCGGCCAGAGGCTGAAGGATCCTAGCGTGGAGGCCCAGGTCTACGGGAACATGGGCATCACCAAAATGAACATGGGGGTGATGGAGGACGCCATTGGCTACTTTGAGCagcagctggctatgctgcaACAGCTTAGTGGCAACGAGGCGGTGCTGGATCGTGGCCGGGCGTACGGAAACCTGGGAGACTGCTACGATTCACTAGGTGACTACGAGGAGGCCATCAAGTACTACGACCAGTACCTATCAGTGGCACAGAGCCTGAACCACATGCAGGATCAGGAGAAGGCCTATAGAGGACTGGGCAATGGACACAGAGCGATGGGGAACCTGCAGCAGtctctggtgtgttttgagaaGAGGCTGGTGGTGGCTCATGAGCTGGGCGAGTGCAGCGGGAAGGCGCAGGCGTACGGGGAGCTGGGCAGCCTCCACAGCCAGCTGGGAAACTACGAACAGGCCATCTCCTGCCTGGAGCGTCAGCTCGCCATCGCCCGAGACACCTCCGACCCCCTGCTGGAGGGCCAGGCCAGCTGCGGGCTGGGCGCCGTCTACCAGCTGATGGGCGAGTACGACACGGCGCTGCAGTTCCACCAGCGAGACCTGCAGATCGCCGAGGAGATGAGCAGCTCCGGCTGTCAGGGTCGGGCGTACGGGAACCTGGGCCTCACCTACGAGTCTCTGGGGAACTTCGAGCGGGCGGTGGTTTACCAGGAGCAGCACCTGAGCATCGCCGCCGAGACCAATGACCTGGCGGCCAAGACTCAGGCCTACAGCAGCCTGGGACGCACCCACCACGCCCTCCAGAACTACTCCCAGGCAGTGATGTACCTGCAGGAAGgtCTGCGTCTGGCGGAGCAGCTGGGCCGGCGTGAGGACGAGGCCAAAATCCGCCACCGTCTGGGGCTCTCACTGTGGGCCAGCGGCAACCTGGAGGAAGCCCAGCACcagTTGTATCGTGCCTCTGCTCTGTTTGAGACTATTCGACACGAGGCTCAGCACAGCACCGACTACAAGCTCTCCCTGTTCGACCTGCAGACCTCCTCATACCAGGCTCTCCAGAGGGTCCTCGTCAGCCTCGGTCATCATGATGAGGCGCTGGCGGTGGCCGAGCGGGGCAGGACCAGGGCCTTCGCCGACCTGCTGGTGGAGCGGCAGACGGGTCAGCAGGACTCAGACCCCTACACCCCCGTCACGGTGGAGCACATCCTGGACACGGTCAACAGCCAGCGGGCCCTGGTGCTCTACTTCTCGCTGGCGGCGGGATACCTGTACAGCTGGCTGCTCGCCCCCGGCTCAGGTATCCTGAAGTTCCATGAAGTGTACCTGGGCGAGGGAGCATCTGAGGGCGGGACTTCCGACTTCCAGGAGTCCGGGGGCGGGTCTCTGCAGGCGGTTGGAGGGGGCGGGTCTTCGCTGGAGCAGCACATCGCTAACGCCCGCGAGGCTCTGGGCGTGGACTCCTACTACAGCAGGGTGTGCTCCAGCAGTGAGACTGAGAGTGAGGCTGGTGATCTTCTGGATCAGCAGTTTGAGGAGCTGAACAACAAGCTGAACTCCGTCACCGACCCGACGGGCTTCCTCAGGATGGTCTCCAGAAACAACCTCTTCAACAGgAGCTGTCAGAGTATGACGAGTCTGTTCAGTAACACAGTGTCTCCAGTTAAAGAAGGAAGCTCCTCTCTGTCCCGTCGCTCCAGCGCTCTCAGTAAACCTCCTCTCAGAGCTCTGTACGACCTTCTCATTGCTCCTATGGAAGGGGGTCTGATGCACTCCAGTGGTCCGGTGGGTCGGCACAGGcagctggttctggttctggaagGTGAGCTGTATCTGATCCCCTTCGCCCTGCTGAAGGGAAGCTCCTCCAACGAGTATCTGTACGAGCGCTTCAGCCTCATCGCCGTGCCCTCCATCGGCAGCCTGGGGGCAACCGCCAAGGTTCATCCTCGGCGTGCGGGGCCGGCGCTCTGCAGTGGGGGCAGCTCCATGGCGGCGGTGGTGGGTAACCCTCGCCTCCCGTCCTCAGTGATGGACCGCTGGCTGTGGGGTCCGATGCCCACGGCTGAAGAGGAGGCCAGCATGGTGGCGGAGCTGCTGGGCTGCCAGCCTCTGGCCGGTCCGGCCGCCACCAAGGAGCGGGTGATGAGCGCGCTGAGCCAGGCCGAGTGCGCCCACTTTGCCACCCACATCTCCTGGAAGCTGGCTGCCCTGGTGCTGACACCCAGCCAGGACGTGGGCCCCGGGGCTGGGGCCGCCGCTCCCTGCGGGGCGTCCGGGAGCGCGGAGGGGGCTGGGAAGTCCAGCTACACCATTCCTGAGAGCCTGCGGATGCAGGACGACGCCAGCGACGCCGAGAGCATCTGCGACAGCCCGCCGCTGCAGGAGTTCCTGCTCACCGCCGCCGACATCCTGGACCTCAGACTGCCCGTCAAACTGGTGGTGCTGGGGTCGTATCAGGAGTCGGACAGTAAGGTGACGGCGGACGGGGTGGTGGGTCTGACCCGGGCGTTCCTGGCGGCGGGGGCTCAGTGTGTGCTGGTGTCTCTCTGGCCCGTACCCGTCGCCGCATCCAAGATGTTCGTCCACGCCTTCTACACCGCCCTGCTGAACGGCACCAAGGCCAGCGCCGCCCTCGCTGACGCCATGAAGACCGTCCAGAGCAGCAAGCAGTTCTCACACCCCTCCAACTGGGCCGGCTTCATGCTGATTGGCAGTGATGTGAAACTGAACAGCCCCTCGTCCCTGATTGGCCAGGCTCTGGCTGAGATCCTGCAGTATCCCGACAAAGCCAGAGACGCCCTGAGGGTCCTGCTGCACCTGGTGGAGAAATCTCTGCAGCGTATTCAGAACGGGCAGCGTAACTCCATGTACACGTCTCAGCAGAGTGTGGAGAATAAGGTGGGCGGGGTGCCGGGCTGGCAGGCTCTGCTCACCGCCGTGGGCTTCAGACTGGACTCGGCCGGTACCGGCCTTCCTAGCGCCGTCTTCTTCCCTACGGCCGACCCGGGAGACCGGCTCCAGCAGTGCAGCACCACCCTGCAGTCCCTGCTAGgtcttcctcctcctgccctGCAGGCCCTGTGTAAACTCATCACCGCCTCCGAGACCGGAGAGCAGCTCATCAGCCGGGCTGTTAAAAATGTAGTGGGAATGCTCCACCAGGTTCTGGTTCAGCTTCAGTCCGGAGAGAAGGAGCAGGATTTCTCACTGGCGCCGATTCAGGTCTCCATCAGCGTCCAGCTCTGGAGGCTCCCGGGCTGCCACGAGTTCCTCGCTGCTCTGGggTTTGATCTGTGTGAGGTCGGTCAGGAGGAAGTGGTGCTAAAGACGGGAAAGCAGGCGAACCGCCGCACCATGCACTTCGCTCTGCAGTCTCTGCTGGCGCTGTTCGACTCCACAGAGCTGCCGAAGCGCCTGAGTCTGGACAGCTCCTCCTCCCTGGAGTCTctggcttctgcccagtcagtGTCCCACCAGCTGCCCCTGGGGTACCCCAACCCCCCCTTCTCCCCGCCCTGTCCCGACAGCCTAGCGTCGGACGCCATCTCCGTCTACAGCCTGAGCTCCATCGCCTCCTCTATGAGCTTCCTCTCGCGTCCCGACGGCGCCTTGGACCTTACCGGTCAGCAGCTGGATCGCCACCGCGGCCTCTTAGCCCCCCAGCGTCACGCGGCCGTGCCCCGCAGCCGCTCCTCCCCGCACAGCGCCGCTGCCGGCACCGGCCACGACGACGAGGAGTACGAGGGCTACAGCATCATCAGCAGCGAGCCTCTGGGCACCCATTGCGACACGCTTCCACGCCCGGCGGGGGCCAGGCACCACCGCGGTGCGACCCGCGGGGGCGTGGGCAGGGGGTACGGGGCATCGGTGTCCTCCAGAGGGAGCGTCAGCACCCCAACATCACCGGTAAAAGCGAGCCTCATACCCAGTCCAAACTCCCCCTTTCAGAAGGTGGGCAAGGTGAGCAGCTCTGATACGGGCGAATCGGACCAGTCCAGCACCGAAACGGACAGCACTGTGAAATCGCAGGAGGAGCGACCTCCCGGAGCCCCTCTGGACCCGCAGGAACTGGCGCAGAAGATCCTGGAGGAGACCCAAAGCCACATGAGAGCAGTGGAGACCCTGCAGAGGAGCGCCAGGCACGCGGCCGCCAGCGACGGCACGAGAGCCGGCGAAGCCTCGACCCCAACCGGAGGATCCGCCTTCCGTTCATCAGAAACCAGCGCCTTCAGCCGACCCAACAGCAGAGCCAGCATCAAAGCCCAGTCCTCGCCGCTCCCCAGCCGCCCTAAACCGCCGTCTCGCACCTCATCACTCCAGAAGATCAGCTCCGGCTACAACAGTCCCGCCACCTCCGAGACGTCGCTAAAGGACGGCAGCCAGCCCTCGCCGACCTCCGACGGCCACAACCAGTTCAAGCTCAAATACCCCAGCTCGCCCTACAGCGGCCACATCTCGCGCTCGCCCAGCAACATCTCCCCCAGCTCCGGGCACCAGTCGCCCGCCGGCAGCGCCCCCTCGCCCGCCCTGTCCTACTCCTCCACCGGCTCCACCCGCTCCAGCCCTGCCGACGCCCCCACCGACCTCGACCGGCTCAGGCTGGCTGCCATCGACGAGAAAGTACAAGCCATCCACAATCTAAAAACCTTCTGGGCGAGCGCCACCCAGCAGCATCACTCCGGCCCAATGAGGGCCGTCCGGGGCGGAGCCAAAATGAGTCCCGCCCAAAGAGACGTCCTAGGCCTTCTCAACCTGTCCCCTCGCCACCACGGCGTTGGCACGGGTCAGGACATGACCGGTCACGAACTGCAGGACATGGGGCTTCAGTCCCTGGAGCGCAGGAACCCTCCAAACGGGCATCGAAAAATCGACCCGAAGCGAGTCGCCCCGTCGCCGACCGCGCCCACCGGGAGGAGCCCCGGCTCCCATCCAATCAGACTGCCTACAGGAAACGGGTACAAGTTCCTGTCTCCTGGGAGGTTCTTCCCCTCATCCAAATGCTGAAAACTTTGCCCCTATGTTCATAAGTACGTTTCTGGTGGAATTAAAATTCGGGTGCTCAGATATTCGGGTGCTCGCCCGTCTCCCGGAGACGGTGGCCAAGAGACGCCAGGTTCGGTTGTGCCATAGATACCGCAGCCTCGCTCCGCCCACCGTTTCAGACTGACCACAAGAGCATATAATCCTTATGCTTCCACcgacactgtaaaaaacattgATATATGCAGACTGACCCTCAGAACTGACCCAGAGAACTGAGTCCAGgggcaaaaaacaaacaaacaaaatgagaaaaaaaaaagattataccAAAATGGTATTCCTACAAAAGACGCTCGCTGTTTGTGTTAGTGAAGACCACATGGCTTTGTCTGGTTCGTTTgtttttcgttttgtttttttgattttttgtttttcttctttgtttttttaatataattattgttattattgttataattatGGATTGTAATTGTTATTACAgttatttgttttgtaaattAAATCAAGTGTTTTGCAATCAGTATTATacgttttttataatattaaagagGCAGActgtgcacagaaaaaaaaaaaaataacgttgaagaaacattttcatatttttattgaaatggTGAAAAACTGCATCTGACCCGACTTCTGTGTGAACTGAGTGTCAGTATTACAGCATGGGTTCTCTTGCTATCCAGTGATTCAATGTCTTTTTAACAGAGATTTTGCATATGTTCTCATCCAGAAATATCTCAGTCATTTCTCAGTAAAATGTCTCAATAAAAGGATTTAATTTA

Function

symbol description
ttc28 Acts upstream of or within microtubule polymerization or depolymerization. Is expressed in blastomere and nervous system. Orthologous to human TTC28 (tetratricopeptide repeat domain 28).

NR:

description
PREDICTED: tetratricopeptide repeat protein 28 isoform X1

GO: NA

KEGG:

id description
K24936 TTC28; tetratricopeptide repeat protein 28

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680773.1 True 8503 mRNA 0.61 25 588887 837920

Neighbor

gene id symbol gene type direction distance location
LOC103038565 LOC108425201 coding upstream 13554 543780 ~ 575333 (+)
LOC103038879 NA coding upstream 47117 536293 ~ 541770 (+)
ptpn11 ptpn11,ptpn11a coding upstream 57062 514237 ~ 531825 (+)
brap brap,LOC107706763,LOC107712082 coding upstream 117466 460448 ~ 471421 (+)
hic2 hic2,LOC107665789,LOC107704150,LOC107548988,LOC107602240 coding upstream 216897 352600 ~ 371990 (+)
LOC103021728 NA coding downstream 31611 869531 ~ 878891 (+)
LOC111195000 LOC108425194,LOC107653585,LOC107704125,LOC108277218,LOC107709189,LOC107602252 coding downstream 226812 1064732 ~ 1089090 (+)
LOC103035435 LOC108425189,LOC108276927,LOC107706776,LOC107554527 coding downstream 679442 1517362 ~ 1532769 (+)
LOC103046457 kmt5a,LOC108425183 coding downstream 819186 1657106 ~ 1661821 (+)
snrnp35 snrnp35,LOC107658469 coding downstream 825336 1663256 ~ 1666211 (+)
G172215 ddx55 non-coding upstream 82795 504665 ~ 506092 (+)
G172198 NA non-coding upstream 100307 472033 ~ 488580 (+)
G172169 NA non-coding upstream 171292 356043 ~ 417595 (+)
G172276 NA non-coding downstream 16030 853950 ~ 858287 (+)
G172462 NA non-coding downstream 152714 990634 ~ 990838 (+)
G172464 NA non-coding downstream 162188 1000108 ~ 1000519 (+)
G172480 NA non-coding downstream 206224 1044144 ~ 1104975 (+)
G172469 NA non-coding downstream 253432 1091352 ~ 1094665 (+)
LOC103038248 NA other upstream 2689 579323 ~ 586198 (+)
LOC103039814 vdac2,LOC107704122 other upstream 105951 435773 ~ 482936 (+)
LOC103025596 purb,LOC108425219,LOC103372361,LOC107099159 other upstream 356552 195126 ~ 232335 (+)
LOC103042277 cnnm3 other upstream 422433 70622 ~ 166454 (+)
G172120 LOC107706809,LOC108425229,LOC107577657,LOC107658568,LOC107721554,LOC107587419 other upstream 524318 63363 ~ 64569 (+)
LOC111194999 pitpnb,LOC108425199,LOC107602250,LOC107709228,LOC107706770,LOC107704163,LOC107653151 other downstream 5868 843788 ~ 866376 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other downstream 545575 1383495 ~ 1544956 (+)
G172517 NA other downstream 669400 1507320 ~ 1542151 (+)
G172552 NA other downstream 788879 1626799 ~ 1628805 (+)
LOC103041266 NA other downstream 1001431 1839351 ~ 1850216 (+)

Expression


Co-expression Network