LOC111195000 (LOC108425194,LOC107653585,LOC107704125,LOC108277218,LOC107709189,LOC107602252)


Basic Information

Item Value
gene id LOC111195000
gene name LOC108425194,LOC107653585,LOC107704125,LOC108277218,LOC107709189,LOC107602252
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 1064732 ~ 1089090 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680778.1
TGGGAGAGGAGGACGGGGGTGCGGGGCTCAGAGCGCGCGGAGGAGCCGGAGCATCACAGGCTGATTAAAGAGACACCTGGATCTCAGCATGAGGCAGGACGGGTCCGTGCAGATGGCTGCGGCGCAGAAGGAGAGCTCGGACCAGAACTTTGATTACATGTTCAAACTGCTGATCATCGGGAACAGCAGCGTGGGGAAAACCTCCTTCCTCTTCCGATACGCTGACGACTCCTTCACCTCCGCCTTCGTCAGCACGGTGGGCATCGATTTCAAAGTCAAGACCGTGTACAAGAACGACAAGAGGATCAAGCTGCAGATATGGgataCAGCAGGTCAAGAGCGTTACAGGACCATCACGACCGCCTACTACCGCGGCGCCATGGGGTTCATCCTCATGTACGACATCACCAACGAGGAGTCGTTTGGAGCCGTACAGGACTGGTCGACCCAGATAAAGACGTACTCCTGGGATAACGCTCAGGTCATCCTGGCCGGGAATAAGTGTGATATGGAGGAGGAGAGGGTGGTGTCTGTGGACAGCGGCCGGCTGCTGGCCGAACAGCTGGgcttcGAGTTCTTCGAGACAAGCGCGAAGGACAACGTTAACGTTAAGCAGACGTTCGAGCGTCTGGTAGATATCATCTGCGACAAGATGTCCGAGAGTTTAGAGACTGACCCCACCGTTACCACGGGAACCCAGGGCAACGCCAGACTAACGGATAACCCCCCGCCGTCACAACAACCCAACTGCGCCTGTTAGTGTCCTGCCTAGCGCACCGTAGCCCAGCGcgcactagtgtgtgtgtgtgtatgtgtgtatatgtatgtgtgtgtgtgtgtgtggtgtgtgtgtgtgtgtggaacatTATCTCCTTCACATTGAGGCATTTAACCTTTAAACCTTGTGGACGACGACAGGTGGAACAAGCCACTTCTCATTGGTCACAGAGAGCATTATATATGCAGTATATGAGTCACGTGATCCTCTTAAGCTCCACCCCCTCCAGTACAAAACATAACcgctatagtatagtatagttacaGGTGTGTTTCAGGTGTGAATTGCCAAAAAATGTTCTGTAAGCtctgtatatattaaaatattaaaattaaagataaaaaagtaaatctCTAGATGCCATATTAGCGTATtaggtttattttattacattattacaattttattatttttagattagTACACATCAGTAGTACCCGGCTTCTGGCACCTCTGTTCTACGTCCAGATCCGTATCGGGTTTTCTGACGTGCAGTGCCTGTCTGGTtaaaattttttaaatcatttttgctttcttttttacgctcgttttttcatttttctctctgtaaGGTGGAACAAAGTTCCACAtgctttttagacttttttatgttattgcTTTCCTTAGCTTAcaaatattaattcatattatatatatatatatatatatatatatatacacaccgcCCAACCCTattcatacatatatttttctgcCTTCAACAAGCTAAACTAGAGCTAAACTCTAGCGGGAACATTGGGAACACATTCAAATCACTCACATATATCtagtaatatatacagtatcaataaatataaatctgtaTATACCTCAGTTGTTTGGATTTAGAAATGTTGTGAAGTGAATTagacaaacagaaacacaaatattatacagtatatttaaaatgtgtttctatTATCATAGTAATTTTCACGTAAAATCTTTCAAAAAATATGGGAATtatctaaaatgtataattttttttttttttatttaatctgttcatttatagttttagtGTAAAACTTTAGTGCTCTAGTGAGTCTGAAGAgcatcttaaatcttaaatcttaaagaTCAGATTGAGGACAGTCATGCTCGTGTCCACAGTGTCCCCTGtccattatctctctctctctgctcatcACTGTGgattcttttatttatctctGCCGGGGAAAAAGCTACTTTAGCTGTAAAAATAGTGAAAGCGCCTCgcagcgtctctctctctctcagatcctGGGTCTGGTGATCTAGATGTGTGAGTGAGGCTCTCGTGAGTCAGTTTGTTGATTTTTCACCATGAAAAATCagatattcattcatttatttaatacattttgcataaaaaataccaggtgtgtgtttgtttatgcttGTTATTGCTGTAAACCCATCTGAGACTAAAAACCCACAGATTTCTGTTTCCTGTCAGTCAAAGTGTTtctgtaattattaattacCCAACATGCTGTTTTGCTGAGTTGGACACAGTAAACAGAACTTCAGGAGAAAATCAGCAGATTGCTgctttgaatcccggtcatgcagcttgccatcagctgccaaagccccgagagagcatagttgaccttgctctctctgggtgggtacagtacagtagatggcgctctctctttcccctcatcactcctagggtgtgTGTGCTTGTCCAACTCAGCAACAGTAGTTTCTAACAgtaatttatttgcttttatttgccTGAATCAATCGGTCAATTATTTCTcccttatatatttataaatatatttaataattctaATAGCTAAATGATAAACTAGTAGCCCTTATCTGAAgcgtgtgttgagtgtgtgtgtgtgtgtttaatcacATGTTCATGGTGTTGTGAGTGTATCGTGTGAATAAAGAGCTCTAAACCGGTAGGTAGTGGAGTCGAcataagcaaaaataaataaatgcagttatataatatatatatatatatatatttattgtgtcAGAACCGAGTAGGCCAGTCCGTGTAATGCCAAATGGAGCCGGCGCATCCGAGCGATGTGCGAGCCGCTGCACAGCGCAGcgtttagcatttagcattacaCCTGCATGAAATCGTGAGACATCTATATTTAGAGAGCTGTATCTATATAGTGGTTTTATTTCTGCTCCCGCGCTTCGCCGGGGGGCAATGGGCCAATAAGTGCAATATTTTGAAACCCTGTCTcttgtatatactgtagatgtACTATAATACGGATGTGtgaactgagtgtgtgtgtgtgtgtgtgtgtgaatataaatGCTTGAATGCGTAAAATGTGCTAATTGAATGAGatattgatgtgtgtgtgtgtgtgtgtgagagagatattagtgtgtgtgtgtgtgtgtgtgtgtgtattagtaaaGGTCATGACCTGTGTGTTGTAAATGGGCAAAATGCTGTTTTTGCACATTCAGCTCTGATTATgtttagccccgccccctttagcccctcctcctcctgttATATTGATACGTTAATGATGTATTGattatttgtgcaaaaaaaaaaaaaaagaaataagaaataagactAAAGTACTGTGTGGAGAGTATGAGTAtgaataagtgtgtgtatgtgaggcagtgtgtgtgagtgtatgagtgactgtgtgtatgtgtgtgtgtgtgtatttaaatgaGATTAAAACTAGCTTCATGCCT

Function

NR:

description
PREDICTED: ras-related protein Rab-3C-like

GO: NA

KEGG:

id description
K07883 RAB3C; Ras-related protein Rab-3C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680778.1 True 3469 mRNA 0.41 5 1064732 1089090

Neighbor

gene id symbol gene type direction distance location
LOC103021728 NA coding upstream 185841 869531 ~ 878891 (+)
LOC103037605 ttc28,LOC107602249,LOC107588927,LOC107704161 coding upstream 226812 588887 ~ 837920 (+)
LOC103038565 LOC108425201 coding upstream 489399 543780 ~ 575333 (+)
LOC103038879 NA coding upstream 522962 536293 ~ 541770 (+)
ptpn11 ptpn11,ptpn11a coding upstream 532907 514237 ~ 531825 (+)
LOC103035435 LOC108425189,LOC108276927,LOC107706776,LOC107554527 coding downstream 428272 1517362 ~ 1532769 (+)
LOC103046457 kmt5a,LOC108425183 coding downstream 568016 1657106 ~ 1661821 (+)
snrnp35 snrnp35,LOC107658469 coding downstream 574166 1663256 ~ 1666211 (+)
denr denr,LOC107722339,LOC107706783 coding downstream 615414 1704504 ~ 1709183 (+)
LOC103044833 LOC108410534,LOC108276727 coding downstream 620315 1709405 ~ 1712925 (+)
G172464 NA non-coding upstream 64213 1000108 ~ 1000519 (+)
G172462 NA non-coding upstream 73894 990634 ~ 990838 (+)
G172273 NA non-coding upstream 188479 822467 ~ 876253 (+)
G172276 NA non-coding upstream 206445 853950 ~ 858287 (+)
G172266 NA non-coding upstream 241972 764626 ~ 822760 (+)
G172469 NA non-coding downstream 2262 1091352 ~ 1094665 (+)
G172503 NA non-coding downstream 237263 1326353 ~ 1326577 (+)
G172513 NA non-coding downstream 267705 1356795 ~ 1431883 (+)
G172519 NA non-coding downstream 297930 1387020 ~ 1389097 (+)
G172520 NA non-coding downstream 312708 1401798 ~ 1403116 (+)
LOC111194999 pitpnb,LOC108425199,LOC107602250,LOC107709228,LOC107706770,LOC107704163,LOC107653151 other upstream 198356 843788 ~ 866376 (+)
LOC103038248 NA other upstream 478534 579323 ~ 586198 (+)
LOC103039814 vdac2,LOC107704122 other upstream 581796 435773 ~ 482936 (+)
LOC103025596 purb,LOC108425219,LOC103372361,LOC107099159 other upstream 832397 195126 ~ 232335 (+)
LOC103042277 cnnm3 other upstream 898278 70622 ~ 166454 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other downstream 294405 1383495 ~ 1544956 (+)
G172517 NA other downstream 418230 1507320 ~ 1542151 (+)
G172552 NA other downstream 537709 1626799 ~ 1628805 (+)
LOC103041266 NA other downstream 750261 1839351 ~ 1850216 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other downstream 764192 1853282 ~ 1855754 (+)

Expression


Co-expression Network