LOC103042387 (LOC108410540)


Basic Information

Item Value
gene id LOC103042387
gene name LOC108410540
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 1760477 ~ 1766925 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680825.1
GTCTTGCCATTGATGCGGATCATATTGAAGCGGTGCAGCGCGTGACAGCAGCCCGCGCGCTGCGGTCCGAATGGAGGCGTGAAGCGGAGAAAATGCCTCGGTGTGGAGGATCCCTGCAGCCCGCGGAGCCGCTTACACACCAGCTTCAGAGAATCCAGTGGTAATGGGCACCTGAACGTTCAGGGGATGATCGGCTTTGAGTGCACTATGCCTTCAGTCGCCTTCCAGGATCTGTTTCTCAACATCTATATGGGAATCTTCGGAACTGGAATATTTGTCTTCATACTGAGTCTGAtattctgctgctgctttataAGTAAACTGCGACACCAGGCCCAGTGTGACAGTTTCGGGTATAAAGTGGTTGTATTCCGAGGTGAAACGAAGCAGTTAAATATTCatgggCAAACCTGCGCTGTATGTTTGGAGGACTTCAGGATAAGAGATGAGATTGGAATGTTGCCATGCCAACATGGATTTCACAAAAGGTGTCTGGTGAAGTGGCTGGAGGTGCGCTGCGTTTGCCCCATGTGCAACAAACCACTTAGCGCCCGAGCAGAGAGGGTCGCCAGCATACTGGATGAACTGGTGTAAAAGGCCGCTATGACCAGCTGCATCAAAGGGTCATACGATCCTATTAACTATTTATCATGGGAAGATGTTCAGAtcttcacattggtcattaatCAGTGGACATTCAGACCTGTAGCGGAGATCAATCTCTCAATAGACTGTATTTAAACAGTTTCTGAATAATCCACCTGCACCTGTGCCCCTGTGACACAGTCTCTCCAGgtgcactatatggacaaaagtattggacacctgtttatcctgcttttgttggagtaactgtctctactatccATGGAACATATACTGGAGAGCttctggagcattgctgtgaggttATGATTGCATTTAACAGTATACAGTATCAGTATCGGAttgagctccatcattccagagaacactgttCCACAACATTtatagcccacacctggcattagactTGATGCCAATAcagtaggttcatgtttatcctctacagagagtcctattctattggcagcacttctctacagggactagacaagctgagagtgtgtgtgtgtgcatttgcacatctgtgtcagcaatggatgtAACTTAAAAGAGCTGACTGCAGCATTCATTAGagggggtgtccacaaacatctggacatatagtgtagttTTGTGTAGTGTAGCTACAATAACATATAAAGACACATATAGACAGCTGTTACCAGAGTGCAATCAGTAATTAATGATTCCTTAATGGATCCAAATatgaaaaacaaagaattaaacattaaacaccaagtgctttttttttcctcaaaa
>XM_022680826.1
AGTCTTGCCATTGATGCGGATCATATTGAAGCGGTGCAGCGCGTGACAGCAGCCCGCGCGCTGCGGTCCGAATGGAGGCGTGAAGCGGAGAAAATGCCTCGGTGTGGAGGATCCCTGCAGCCCGCGGAGCCGCTTACACACCAGCTTCAGAGAATCCAGTGGGCACCTGAACGTTCAGGGGATGATCGGCTTTGAGTGCACTATGCCTTCAGTCGCCTTCCAGGATCTGTTTCTCAACATCTATATGGGAATCTTCGGAACTGGAATATTTGTCTTCATACTGAGTCTGAtattctgctgctgctttataAGTAAACTGCGACACCAGGCCCAGTGTGACAGTTTCGGGTATAAAGTGGTTGTATTCCGAGGTGAAACGAAGCAGTTAAATATTCatgggCAAACCTGCGCTGTATGTTTGGAGGACTTCAGGATAAGAGATGAGATTGGAATGTTGCCATGCCAACATGGATTTCACAAAAGGTGTCTGGTGAAGTGGCTGGAGGTGCGCTGCGTTTGCCCCATGTGCAACAAACCACTTAGCGCCCGAGCAGAGAGGGTCGCCAGCATACTGGATGAACTGGTGTAAAAGGCCGCTATGACCAGCTGCATCAAAGGGTCATACGATCCTATTAACTATTTATCATGGGAAGATGTTCAGAtcttcacattggtcattaatCAGTGGACATTCAGACCTGTAGCGGAGATCAATCTCTCAATAGACTGTATTTAAACAGTTTCTGAATAATCCACCTGCACCTGTGCCCCTGTGACACAGTCTCTCCAGgtgcactatatggacaaaagtattggacacctgtttatcctgcttttgttggagtaactgtctctactatccATGGAACATATACTGGAGAGCttctggagcattgctgtgaggttATGATTGCATTTAACAGTATACAGTATCAGTATCGGAttgagctccatcattccagagaacactgttCCACAACATTtatagcccacacctggcattagactTGATGCCAATAcagtaggttcatgtttatcctctacagagagtcctattctattggcagcacttctctacagggactagacaagctgagagtgtgtgtgtgtgcatttgcacatctgtgtcagcaatggatgtAACTTAAAAGAGCTGACTGCAGCATTCATTAGagggggtgtccacaaacatctggacatatagtgtagttTTGTGTAGTGTAGCTACAATAACATATAAAGACACATATAGACAGCTGTTACCAGAGTGCAATCAGTAATTAATGATTCCTTAATGGATCCAAATatgaaaaacaaagaattaaacattaaacaccaagtgctttttttttcctcaaaa

Function

NR:

description
PREDICTED: RING finger protein 122-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680825.1 True 1365 mRNA 0.45 6 1760478 1766925
XM_022680826.1 False 1360 mRNA 0.45 6 1760477 1766925

Neighbor

gene id symbol gene type direction distance location
dusp26 dusp26,LOC107720817 coding upstream 6720 1747521 ~ 1753757 (+)
LOC103043725 bcl7a,LOC108410533,LOC107704131,LOC107706784,LOC107722340,LOC107554537 coding upstream 41530 1713634 ~ 1718947 (+)
LOC103044833 LOC108410534,LOC108276727 coding upstream 47552 1709405 ~ 1712925 (+)
denr denr,LOC107722339,LOC107706783 coding upstream 51294 1704504 ~ 1709183 (+)
snrnp35 snrnp35,LOC107658469 coding upstream 94266 1663256 ~ 1666211 (+)
LOC111194965 mrps24 coding downstream 192160 1959085 ~ 1961614 (+)
polm polm coding downstream 207320 1974245 ~ 1981134 (+)
LOC103032544 NA coding downstream 223840 1990765 ~ 1993332 (+)
ddx56 ddx56 coding downstream 242735 2009660 ~ 2018739 (+)
ash2l ash2l,LOC107704134 coding downstream 289440 2056365 ~ 2073303 (+)
G172576 NA non-coding upstream 62967 1694865 ~ 1697510 (+)
G172548 rilpl1,LOC108410543 non-coding upstream 83051 1674159 ~ 1677426 (+)
G172522 NA non-coding upstream 290575 1436426 ~ 1469902 (+)
G172521 NA non-coding upstream 335037 1423606 ~ 1425440 (+)
G172520 NA non-coding upstream 357361 1401798 ~ 1403116 (+)
G172600 NA non-coding downstream 6300 1773225 ~ 1776601 (+)
G172733 NA non-coding downstream 98176 1865101 ~ 1882035 (+)
G172735 NA non-coding downstream 107876 1874801 ~ 1875147 (+)
G172736 NA non-coding downstream 118283 1885208 ~ 1888464 (+)
G172737 NA non-coding downstream 121617 1888542 ~ 1889596 (+)
G172552 NA other upstream 131672 1626799 ~ 1628805 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other upstream 215521 1383495 ~ 1544956 (+)
G172517 NA other upstream 218326 1507320 ~ 1542151 (+)
LOC111194999 pitpnb,LOC108425199,LOC107602250,LOC107709228,LOC107706770,LOC107704163,LOC107653151 other upstream 894101 843788 ~ 866376 (+)
LOC103038248 NA other upstream 1174279 579323 ~ 586198 (+)
LOC103041266 NA other downstream 72426 1839351 ~ 1850216 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other downstream 86357 1853282 ~ 1855754 (+)
G172770 h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302 other downstream 227783 1994708 ~ 1997362 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other downstream 951684 2718609 ~ 2726076 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other downstream 1698208 3465133 ~ 3739736 (+)

Expression


Co-expression Network