ddx56 (ddx56)


Basic Information

Item Value
gene id ddx56
gene name ddx56
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 2009660 ~ 2018739 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680868.1
AGCCTCATTACTCCGCTCCTCGCGGACCCACGTGGGCAGGAGAGAAAGATGGCAGACGACAGGCTCTGTTTCCACGAGATGGGTTTGGATGATCGTCTTTTAAAGGCGATCGCAGACCTGGGCTGGGCTCAGCCGACCCTCATTCAGGAGAAAGCCGTTCCTCTGGCTCTGGAGGGAAAGGATCTTTTGGCCAGAGCTCGAACCGGTTCAGGAAAAACAGCGGCTTACGCCATTCCTGTTATCCAGCAGATCCTCACCTCTAAACAGACTGTGCAGGGGGAGCAGGCGGTCAGAGCTCTGATTCTGGTTCCTACTAAAGAACTGGGACATCAGGTGCAGACAATGATCCGGCAGCTCACTGCATACTGCGCTAAAGATGTTCGGGTGGCAGATATCTCAGGAAAAACTGAATTATCTGCACAGAAGCCCATTCTAATGGAAAAGCCTGATATTGTGGTGGGAACTCCATCGCGAGTGCAGGTCCACATTTCTGCTCAGAACCTGGTGCTGCACTCGTCTCTGGAGATGCTGGTCATTGATGAGGCTGATCTTCTGTTCTCTTTCGGTTTTGAGGCTGATCTTAAAAACCTCATCTGTCACTTACCCAAGATCTACCAAGCTTTCCTGATGTCTGCTACTCTCAGTGATGACGTTCAGGCCTTGAAAGAGTTGGTTCTGCACAATCCAGTGACCCTGAAGCTGGAAGGCTCGAACCTGCCGGGCAGCGCTCAGCTGCAGCAGTACACGGTGAAATGTGAGGAGGACGAAAAGTTCCTGCTGATTTACGCTCTCCTCAAACTGGGCCTGGTCCGCGGCAAGACCCTCATCTTCGTGGGCATGCTGGACCGCTGCTACAAACTCAAGCTCTTCCTGGAGCAGTTCGGCATTCCTGCCTGCGTGCTGAACTCTGAGCTGCCCGTTCACTCCAGGTGTCACATCATCTCCCAGTTTAACCAGGGATTTTATGATTACATCATCGCTACAGACGAGCAGGTGCTCAGTATCCCATCAGCCTCCTCTCAGAGCGCCGAGgacaaaggaaagaaaaagaagaagaagaagaacggGAAGAATAAAACGGGTAAAGATAAAGAATACGGCGTGTCCAGAGGGGTCGATTTCCAGAACGTGGCGAATGTGATCAACTTTGATTTTCCCACATCTGTTGAATCTTATATCCACAGAGTTGGCAGGACGGCTCGAGCAGACAACCGTGGCACCGCCCTGTCCTTCGTCGCTCATTCAGAGCTGTCTGTGCTGGAAGAGGTTGAAGCTTCTCTTACTGGAGACAATGCAGACTGCGCACTGAAGCCATATGCATTCAAAATGGAGGAAATCCAGGGATTTAAATACAGATGTCAGGATGCCATGCGTGCCGTCACCAGACAGGCGGTGAAAGAGGCCAGAATAAAGGAGATAAAGCAGGAGCTGCTGAActctcagaaactgaagATGTACTTCGAAGACAACCCCAGAGATCTGCAGCTTCTGCGCCACGACAAAGCGCTTCACCCTGCCGCCGTCAAACCCCACCTGCGCAACGTTCCCGAATACCTGATTCCTTCCACATTGCAAAACAGGGTTAATCCTCTTCTGCggagaaagaataaaaagaagttGAAGCTCATCGCAAAAGGGGTTATCAAAACTCCGTTTAAGAGGAAATTCAGGGGGAAGGACCCGCTGAAGAGTTTCCGCTTCACAGGAAAGAAGAGCAAACCCAAAACCGAGTGACTGAACTGACTGAAAGCCTTCATCAGTCTGCTGATCTGACCGCTAGGTGGCGCTGTACAGACTGGCGGAGATATTCGGCGGATAATCACTGCTTTCTGTTCTGCACCACGAGAATCTTTAtgctacattaaattaaatggaCACTAATGGACCTCGCTCTGTACTGAACCAACTATGGACTGAAGGGATGAGGAATTAAAACAGAAGTGCCAAGTGGAGATTCCAGTGTAGCTGAGAAGCAAACCCAGGTTGGGAAAAATGATcattgcaatatattaaatatatattagtttgGTTAACATACCacttatatggacaaaagtattgtggcatctgttcattcattgtgttttttttccaaaattaaactgtattaaacagagtttatcctgcttg

Function

symbol description
ddx56 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Predicted to be active in nucleolus. Orthologous to human DDX56 (DEAD-box helicase 56).

NR:

description
probable ATP-dependent RNA helicase DDX56 isoform X2

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K14810 DDX56, DBP9; ATP-dependent RNA helicase DDX56/DBP9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680868.1 True 2130 mRNA 0.49 14 2009660 2018739

Neighbor

gene id symbol gene type direction distance location
LOC103032544 NA coding upstream 16328 1990765 ~ 1993332 (+)
polm polm coding upstream 28526 1974245 ~ 1981134 (+)
LOC111194965 mrps24 coding upstream 48046 1959085 ~ 1961614 (+)
LOC103042387 LOC108410540 coding upstream 242735 1760477 ~ 1766925 (+)
dusp26 dusp26,LOC107720817 coding upstream 255903 1747521 ~ 1753757 (+)
ash2l ash2l,LOC107704134 coding downstream 37626 2056365 ~ 2073303 (+)
mier3 mier3,mier3a,LOC108441071,LOC108277354,LOC107568605,LOC107665797 coding downstream 75823 2094562 ~ 2103944 (+)
pdxp pdxp coding downstream 92249 2110988 ~ 2115322 (+)
LOC103035434 LOC103035434,LOC108441064,LOC108277206,LOC557306,LOC107687378,LOC107568610,LOC107665788 coding downstream 197279 2216018 ~ 2232907 (+)
epb41l4a epb41l4a,LOC107653778,LOC107709672,LOC107692020 coding downstream 815502 2834241 ~ 2897371 (+)
G172763 NA non-coding upstream 5235 1999389 ~ 2004425 (+)
G172756 NA non-coding upstream 45056 1962721 ~ 1964604 (+)
G172741 NA non-coding upstream 97935 1904782 ~ 1911725 (+)
G172737 NA non-coding upstream 120064 1888542 ~ 1889596 (+)
G172736 NA non-coding upstream 121196 1885208 ~ 1888464 (+)
G172782 NA non-coding downstream 23986 2042725 ~ 2043939 (+)
G172788 NA non-coding downstream 42359 2061098 ~ 2106334 (+)
G172789 LOC108441067 non-coding downstream 106815 2125554 ~ 2130319 (+)
G172800 NA non-coding downstream 119900 2138639 ~ 2227606 (+)
G172898 NA non-coding downstream 488742 2507481 ~ 2507692 (+)
G172770 h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302 other upstream 12298 1994708 ~ 1997362 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other upstream 153906 1853282 ~ 1855754 (+)
LOC103041266 NA other upstream 159444 1839351 ~ 1850216 (+)
G172552 NA other upstream 380855 1626799 ~ 1628805 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other upstream 464704 1383495 ~ 1544956 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other downstream 699870 2718609 ~ 2726076 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other downstream 1446394 3465133 ~ 3739736 (+)
G173094 NA other downstream 1721563 3740302 ~ 3743205 (+)
G173111 LOC108435134,LOC108277016 other downstream 1890203 3908942 ~ 3931991 (+)
gdnf gdnf,LOC107653769,LOC107752627,LOC107692037,LOC107569368,LOC107727951 other downstream 2099295 4118034 ~ 4130482 (+)

Expression


Co-expression Network