epb41l4a (epb41l4a,LOC107653778,LOC107709672,LOC107692020)


Basic Information

Item Value
gene id epb41l4a
gene name epb41l4a,LOC107653778,LOC107709672,LOC107692020
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 2834241 ~ 2897371 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680884.1
GCTGCTTGGCAACGGAGCGCCGGAGTCCTGCATTCACCGCGTCTGCGCTTCTGAACAGTTCAGCAGCTTCTGCTCCAAAAACAGCGCGATTTATTACAAAACCAGAGAAGAAGAAGCGATTAAACTGTACTAACTGGAGTTACCTGTGCAGGTTTAGCGGGAAACACCTGCAGACCGGACTCTCACTCATGACCCCCCCTCTtatctccagcagcagcagcgcgcgGATGGAAGTGTGTCACTCGCTGATCCCCACAAAGGAGCAGGGCTAGCCGGGTTGCCAGATTGCACCGTTGTCAGACGGAGGAGCGCATAAACCACCCGAATTAAACTGGAGGAAAAAGGTGGAGGAAGCTGAAGTGCAGAAAGTGAAGGAGCGGGTGAGGTGGCCGGGCTGATCATGGTGCTGGTCATGGTGCTGGGGTAGAGCTGGACAGGCTGGCTGGAATCTGAGTGGCAGTTTTTTAGAGGAGGGATTTTGGTGGCACCATGAGCTGCTTCTGCTCGGTCCAGGAGGAGTTCTACTGCGAGGTTCTGCTGCTGGACGAGACCAAGCTCACCCTCACCTCTCAGCAGCAGGGCATTAAGaaatcCACTAAAGGCTCAGTGGTCTTGGATTACGTGTTTAGCCATGTGAACCTTGCAGAGATCGACTACTTCGGGCTGCGCTACTGCGACCGCAGCCATCAAACGTATTGGCTCGATCCTACGAAAACCCTCGCCGAACATAAAGATCTGATAACGACCGGCCCTCCGTACACCCTCTATTTCGGTGTTAAATTTTACACAGAGGATCCCTGTAAGCTAAAAGAGGAAATTAcaagGTACCAGTTCTTCCTGCAGGTGAAGCAGGATGTGCTGCAGGGAAGACTTCCATGTGCGTTCAATATCAGCACACAGATGGCAGCTCTGGctatacaatCTGAGCTGGGAGATTACGACCCGTACAGACATGTGTCGGGCTACGTCTCGGAGTATCGCTTTGTGCCAGATCAGAAGGAAGACCTGGAGGAGGCCATTGAGCAGATCCACAAAACTCTGATGGGTCAAACTCCTTCTGAAGCCGAGAACAATTATTTAAGCATTGCCAAAGGACTGGAGATGTACGGAGTGGACCTTCATCCAGTGTTTggaGAAAAGCAGTCTGAGTATTTCCTCGGCCTGACACCAGTCGGAGttgtagtttataaaaataaaacccaaGTGGGGAAGTATTTCTGGCCAAGAAtaacaaaagtgtttttcaaGGAAACCCAGTTTGAGCTGCGGGTTCTGGGGAAAGACtgcaatgAAACGTCGTTCTTCTTTGAAGCTCCCAGCAAGACGGCGTGCAAGAACCTCTGGAAGTGCTGCGTGGAGCACCACACCTTCTTCAGAATGCCGGAGAATGACTCCAGCACACTGACAAGAAAGCTGTCTAAACTCGGCTCCCTCGGCTCCAGACATCGATACAGtGGGAAAACAGCCATGCAGATGGGGAAGGACCAGTGTGTGGGTTTGCCCAGGCTGGACCTGGAGGTGGTGCGGACCCGCAGTAAGACCTACCCTAAGCGGAGCTCTCAGCCCACAGGGATGAACAATGGCAGCAGATTGGTGACAAAGGCAGGAAATTCCCTGACTGAAGGCCAGGTTAAAAACACCACACTCTCCCCAGCTAAAAGTCCTAAAGTGTCTAAAACAGAGGTCAGTTCAGAGGATCAGCCAGGCAAGCCCACTGCACCCTGGGACGAGAACGCGCCGCAGAGTGGGCTTTACAACTCGGCCAGCGAGAGGAATAAATCCCCTAAATTCCCCAAAGCACGCAGACGCACGCCCTCAGGAGGCAGCGAAAATGAGGTGTCTCAAACTGCCAGACAcagGAGAGACCCGAGCACAGAGGACCCGGCCAGTAAACAGCATCGGAGACGGTCACGTTCCCGGGGCAACACCAGCAGTGGCAGCGAGTCGGAGAATTCCAACAGGGAGCATCGTAAAAAACGCAACCGgtctcGTCAGGAGAATGAGATGGTGGACTCTGGACCTCAGTGGGAGGCTGTTCTCCGCAGGCAGAAGGAGAAAACCCCAAACGACCCAAACCACCGGCGCTCGCGCCATCGCTCCAGATCGAGAAGCCCTGATGTTCAGGCCAAGGAGCAGCTCTGGAAACATATTCAgaAGGAGCTGGTGGATCCCTCTGGCCTCACTGAGGAGCAGCTGAAGGAGATCCCATATAAGAAAGTGGAAACCCAAGGTGATCCAATCCGCATCCGGCACTCTCACTCCCCCCGCAGCTTCCGGCAGTACCGGCGCTCGCACTGCTCCGACGGGGAGAGGTCCGTCCTCTCAGAGGTCAACTCTCGGACAGATCTGGTGCCCCCGCTCCCTGTTACCCGCACTGCCGATGTGCCTGGCTCCAGCACCTCCACCGCACAGAAGAAGAACGCGTCCAAAGACAACCTGTCCGAGAGTTCCGAGCAGGACACGAAGAACAGCGCCAAGGTGGTGAAGACTGCACACGGGCATCGGACCAAAACCGAGACGTGACCGCTCTACCTCTACAGCGTGGGAGGTTAGGAGGTTAGCATGGACTGGACAGAGCAGGTCGGGTGCTGTTCGGCAGCTTGGTTTGTCGGTTTCACACAAGCGTTAAAGCTCCGGCCTGAAAATGAATTCAGTGAGACTTTCTTTGTATGAATGTCATGTCTATataaaaaactgtgtaaaaacatttatatcacgttataccacagttagctgcgaccctgcagtgtgattggctgagaggcgttcaatgagtgccattatcagccggtaatgcactatTAAcggaagctctccatgtattaatcCGCCACATACAGATAGCCTAGCAACGATGcggcgcttacaagccaaacagtgcagctacaaacagagcagcaatggaacaatTTTAACTGGCGGCTTGTTCATAaccaataaacagtgataatggaactgtggtataatcgcaacaatacactcgaggttaatgctataacatgtaatattggcattgCTGTGCTGATCAAtggcagtgccaatattacacattatagcactccctctcgtgtattattgcttaattataaagCTCTCATAAGGCTTATTACACACTGTTATAAATATAAGGCTGGGcgatattttaagaaaaaattctaaactcttcaaagaaatatattttttatttcttgcatAAGCACTGAAAATTACAGATCTATTGGgttttattcctatttttaattgtaatgcacatttaaagcttttaaatatgCTAACTATTATTTCTTGAACATTTATTATCCAAGGGAGTCAAATCAGTGCAAGCTTAAAAAACTCATttgaaacctaaaatctaaaacaaaagtttaattttgctattttaattcTATATCTTGATTACAACATTAATTTACAAATACATAACACATTATTGCAATGTTTGTTATGGATATTGATCATTGATATACAAAGAATTGGAGAGTCCCAGCATGCACAGAGCATTATAACTAATAATTTTGCCTACTTATAAACACACTCTATGATTACTTTGACAGGCTTTTAAAAGATTCACAGATGGAAACCACATGATCACTGGTTCAATTCCCGGTCATGCAGTTTGCCGTtatccttgctctctctgggtgggtacagtagatggtgctctttcccctcatgactcctagggtgatgttgatcagcacaaggcgtctgtgagctgatctaTAGGAACCCAGTTTATAGatatttatagctatatttataatgccttatgaatgcattataatgtgttatgaatgtgttcGTAGAGTCTTATAGACATGACATTTATAGAAAAGTCTGAGCATGAATTCTATGCCATAAGCCTGATTAAGGCCTGTGTTATCTATGTTAACAATCTATGTTACAAGAAAGGAACTGGGGTCCTGGTCAGTACAACGAATCGACAAATCTATAATATCTACAATcgaaaaacagttttttaaagGCGTATCCACATCAACTCTGACAATCAAATGAAGGATAATGGAGCATATGTACAGAACACGCCGCAGGTGTTTAAGGTGTTACACTGGCATCgttacactgattttggattttgaattttatacagtattaaatatTCTCAGACGCATTCTAGTACATGTGGAAATGATCGTGGAAGAGCTTGTAGTACCACACTCGTGTTCTCAGATGTTAGGACGACTTCTCTCTGCTGTAGGACATTTTTTTGCTGctgtatttctttgtattgtttttgcACATTCTTGTCTTTCtctgctgttaaataaataaatcacagaaCATGGTTCACTGGGCTGGAGACTCAATTCTTGTCAATAAAAAAGATCTGTGTTCACGGCAGTA

Function

symbol description
epb41l4a Predicted to enable calmodulin binding activity. Predicted to be involved in actomyosin structure organization. Predicted to be located in cytoplasm. Predicted to be active in cytoskeleton. Orthologous to human EPB41L4A (erythrocyte membrane protein band 4.1 like 4A).

NR:

description
PREDICTED: band 4.1-like protein 4 isoform X1

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005516 calmodulin binding molecular_function

KEGG:

id description
K23962 EPB41L4A, NBL4; band 4.1-like protein 4A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680884.1 True 4365 mRNA 0.47 23 2834241 2897371

Neighbor

gene id symbol gene type direction distance location
LOC103035434 LOC103035434,LOC108441064,LOC108277206,LOC557306,LOC107687378,LOC107568610,LOC107665788 coding upstream 601334 2216018 ~ 2232907 (+)
pdxp pdxp coding upstream 718919 2110988 ~ 2115322 (+)
mier3 mier3,mier3a,LOC108441071,LOC108277354,LOC107568605,LOC107665797 coding upstream 730297 2094562 ~ 2103944 (+)
ash2l ash2l,LOC107704134 coding upstream 760938 2056365 ~ 2073303 (+)
ddx56 ddx56 coding upstream 815502 2009660 ~ 2018739 (+)
LOC103033517 srsf9,LOC107560829 coding downstream 33684 2931055 ~ 2936876 (+)
LOC103030660 LOC108435150,LOC108277167 coding downstream 76386 2973757 ~ 2997663 (+)
LOC111195006 LOC108435149,LOC108277169,LOC107679516,LOC107730971,LOC107672600 coding downstream 103862 3001233 ~ 3007009 (+)
LOC103031719 NA coding downstream 154664 3052035 ~ 3062372 (+)
LOC103030349 LOC108435127 coding downstream 166524 3063895 ~ 3085005 (+)
G172914 NA non-coding upstream 58223 2774888 ~ 2776018 (+)
G172913 NA non-coding upstream 59405 2774543 ~ 2774836 (+)
G172906 NA non-coding upstream 141110 2667370 ~ 2693131 (+)
G172903 NA non-coding upstream 220728 2613226 ~ 2613513 (+)
G172899 NA non-coding upstream 252403 2581410 ~ 2581838 (+)
LOC103032978 LOC103033194 non-coding downstream 17418 2914789 ~ 2929255 (+)
G173045 NA non-coding downstream 266001 3163372 ~ 3163578 (+)
G173048 NA non-coding downstream 301408 3198779 ~ 3199215 (+)
G173049 NA non-coding downstream 303192 3200563 ~ 3200788 (+)
G173050 NA non-coding downstream 303503 3200874 ~ 3201620 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other upstream 108165 2718609 ~ 2726076 (+)
G172770 h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302 other upstream 836879 1994708 ~ 1997362 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other upstream 978487 1853282 ~ 1855754 (+)
LOC103041266 NA other upstream 984025 1839351 ~ 1850216 (+)
G172552 NA other upstream 1205436 1626799 ~ 1628805 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other downstream 567762 3465133 ~ 3739736 (+)
G173094 NA other downstream 842931 3740302 ~ 3743205 (+)
G173111 LOC108435134,LOC108277016 other downstream 1011571 3908942 ~ 3931991 (+)
gdnf gdnf,LOC107653769,LOC107752627,LOC107692037,LOC107569368,LOC107727951 other downstream 1220663 4118034 ~ 4130482 (+)
G173397 NA other downstream 1846198 4743569 ~ 4744249 (+)

Expression


Co-expression Network