LOC103030033


Basic Information

Item Value
gene id LOC103030033
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 3125086 ~ 3131636 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680889.1
aAACCTTCTTTCTCAGAGCTCTGGAATTTTCCGTTTGAGagctacagttaaaaaaaatctaaagaagCTCAAACGGAAGggaaaacagcattttagcattttttaaacagtgaataatgttagttagcttagctggtgTATCTGAAACCTGTAGCTAGTTATAGTTAAGCTGCTGATTCATCCATTTCACTGTGAAAAGCAAAATGAGGGTGGAACAGCTTCCAGCTCCCAGTAACAACCTCACACCCACCATCCAGAGAAACCCAGGAACAGCTCTCTTATCAGGAGCTATGAATGGCAGCATaaatccagcagcagcagcgaagGAACCAAAAAATGATGACCTTCCTGTTAAGAAGGCATTTACGGCCGAAACACCCAAACTCCCAACCACTGCTCCTATTAAAAAGAAGACTCTACAGCCAAACTGTAGAGAGACTCAACCGAGACCAAGCAGCCTCCCCTCTGCAGGAAGAGACACTCAGAAGAAGATGACAAAAGCGAAATGGCTGTGGAAATTTTCTCGGTGGAGGCGTCTCCACAGAAGTCTGTGGGACCCCCAAAGTCTTAGGCCCCCAAAACTAACACCCGATGCTACTACAGTACAGTCCAGACAGCGTGAGAAAGCAGATGCCAGCGCCAATAAGAATTCATTAGCTCGATCAATCAGATCCATGCAGCTGTTAACTTCCACCTCAGAGTCTTCCCCCTCTCCTCCTTCCTCTAAAGGCAAAAGGTGTAAAGCCGTCCATGTGTACCGAACCCGCCGTTACCGGAACCAGTTACTGTGGTACCGGATCCTGCAGCATGAGAAGAGGCTCAGAGCTCAGAGATTAGCCCAGCAGAGCATCAAGACTCCGTCTTCTGCAGATTCCTCAGTGAGAAAAGGCACCTCAGAATACCTGGATAAACCAGGTTTGAAATATCAGcgagaggaaagaaagagaagccTGCCATCAGCCCGCAGCTTTCTGGTCAGAAAGATGTCAAGAAGGACCAAACGCAAGCTGTGGCGTCGCCAGCtggacagcagcagctctgatTCTCCTGTTTCAGGGAGCAGTGCCAGTGCCACCCCTGTATGTGCCCGCTGTATGTCCTCCAGAGGTCTTGGCACTAGGAGCTGCCCAACTTTAACTTCAGACTCTTTCACCTCCCTGAAGGACACTCCCTCAACCAACATGAAATCAGCTCTGGCAAGTCCAGGTCAACGATGTGCCGATAAAAAACGAGTTACGTTCTCAGATTTTCAAGAGGGACCATTATTTTCTCACATGCAGAAGACCACGAAATCTCCAAGACCTCTGAAAGAGGTCAAGTTCAAAGATTCACCATCTGCAATTCAAATCTCTGAGACACCTAGCACTCCACACGTCTGTAAGAAGAGATCAAAATCTTCAACAAGACGTTCTGCTACGCCCAAGCACAAAGTTCAGGCTAAATCCATATCCTCTATTGACCTTTCATTGAAGGGGAACTCGCAGTCAGACACGTCCAAATCACCCTCAAAAGTATCAAGCTCTCAATGCTTAGCTTCCCAGATGAATCACTCACAGAAGTTCATCCTCCAAGTAACCCCGAGCCCTAAAGACCCTCAtcagaggaaaaagaagaagaaacatgGCCAAAACAAGCCAACTTCAAATACCCCTGCAGAGACAACAGCGAGAATGCAGGCTCATCCACAAGCCCAGTTTAAGACTCCATCACCAAGAACATCAAACATCCAACCAGAGTACCCCCTTCCTTCCAAAGCAGCATCGTCCAGCACTTTCAAACGCCCAATATCTGCAAGACAGGGAAATTTAAAGATTGGGCATAATTGCACCCGCAGTACGCAGACGCCGTTCAGAAGGCCAGACACGCCGAGACCTAAAAGCTGCCCCGAATTTCTGAAATGGAAGAAGGTTCTTGAGCTCAGAGACAAAATGACAAGACCTACTTCCAGGAGCCTGTGCAGCTTCCAAGGACACTCGTCAGAAGAATACGCAGATATTCTTCCCTCACCCAGACAGATGTTCTCAGACAGTTCATCACTGTCCATCCAGTTCACACAGAAGCATGGTCACTCCAGCAGGCCTGCTCTCGACCGTGAGAATTCTTCTCAACGTCTGGAACAAAGTCATCATGGTAAAGCTGCTGTACTGAATAAGAGGATGGAGAGCCAGCATCTCAGCACATCGTCTCCATCCATAACCCTGCAAATCGCCCAAGAGCAGCGTTCCGGTTCCTCCAGCCCAGAGCTCAGCCAGGCCATACTCAGTGCCATGAGACTTTTTTTGAGTAAGCAGCCAGCGGAGGCGGAGTCTACCTCCTTTAACAGCCCGTGCCATCCGAGTCCTAGCCCTGACACTTCAGCCTCTGGCGGGGATGCCAGGCAGCGGCCTGTCAGCCAGAGGACAAGTCTTTCAGGATGCCAGTATTTTGCTGTTTCTATCAAACCTCTGGAGCTTTCTCCTCCTTTACCGTTCCTCAGCCAGGACACGTGCCGTCCTGTTGAGCATAGAGGACCCTTCTGGCTGGTGCAGGAAGGGGGAGATAACCATACCCAGTCATCACCTGAACAAACCCTGACCGAGCGAGAGATCAATGGACAAGCTGCAGAACCAGATGCAAAAAAGGCAGATAAGATTAAATCTGCATCAAAAAGTAAACGCCATACTATATAGTAACAAAATCCAGGGATCTGTGTGTAAATAGTTCATACCTAGGTATTTTGGGAAGCCTCTTTGTTGTATTTACCATAAATGAACATAGGATGGCAGCGTTGTGTAACACTGTTGAGCATCCCTGCTCTGTTCTTTGTCTGGGGATGTGCCAAAAAAAGGAAGATGTTGaagataaaaaatcaaataaatcatatttacaattttttttttctgaaattttaGTGCGATGAACTTTCTGTAGTAGATTAAACCATTTTATTTCACATGCATCatagttttttatttggttttaaagTGTATTATCATAGCATTCACAGCTCTCCTCCTTGCCCTCCTCATGTCACAGGGAGCATTGCAGTGATAAAGGGGAGTCCTATTAAGTGGGTGGTTTAATTTGCTTGGCTAAATTTGAGAA
>XM_022680891.1
tgtaaaAACCTTCTTTCTCAGAGCTCTGGAATTTTCCGTTTGAGagctacagttaaaaaaaatctaaagaagCTCAAACGGAAGggaaaacagcattttagcattttttaaacagtgaataatgttagttagcttagctggtgTATCTGAAACCTGTAGCTAGTTATAGTTAAGCTGCTGATTCATCCATTTCACTGTGAAAAGCAAAATGAGGGTGGAACAGCTTCCAGCTCCCAGTAACAACCTCACACCCACCATCCAGAGAAACCCAGGAACAGCTCTCTTATCAGGAGCTATGAATGGCAGCATaaatccagcagcagcagcgaagGAACCAAAAAATGATGACCTTCCTGTTAAGAAGGCATTTACGGCCGAAACACCCAAACTCCCAACCACTGCTCCTATTAAAAAGAAGACTCTACAGCCAAACTGTAGAGAGACTCAACCGAGACCAAGCAGCCTCCCCTCTGCAGGAAGAGACACTCAGAAGAAGATGACAAAAGCGAAATGGCTGTGGAAATTTTCTCGGTGGAGGCGTCTCCACAGAAGTCTGTGGGACCCCCAAAGTCTTAGGCCCCCAAAACTAACACCCGATGCTACTACAGTACAGTCCAGACAGCGTGAGAAAGCAGATGCCAGCGCCAATAAGAATTCATTAGCTCGATCAATCAGATCCATGCAGCTGTTAACTTCCACCTCAGAGTCTTCCCCCTCTCCTCCTTCCTCTAAAGGCAAAAGGTGTAAAGCCGTCCATGTGTACCGAACCCGCCGTTACCGGAACCAGTTACTGTGGTACCGGATCCTGCAGCATGAGAAGAGGCTCAGAGCTCAGAGATTAGCCCAGCAGAGCATCAAGACTCCGTCTTCTGCAGATTCCTCAGTGAGAAAAGGCACCTCAGAATACCTGGATAAACCAGGTTTGAAATATCAGcgagaggaaagaaagagaagccTGCCATCAGCCCGCAGCTTTCTGGTCAGAAAGATGTCAAGAAGGACCAAACGCAAGCTGTGGCGTCGCCAGCtggacagcagcagctctgatTCTCCTGTTTCAGGGAGCAGTGCCAGTGCCACCCCTGTATGTGCCCGCTGTATGTCCTCCAGAGGTCTTGGCACTAGGAGCTGCCCAACTTTAACTTCAGACTCTTTCACCTCCCTGAAGGACACTCCCTCAACCAACATGAAATCAGCTCTGGCAAGTCCAGGTCAACGATGTGCCGATAAAAAACGAGTTACGTTCTCAGATTTTCAAGAGGGACCATTATTTTCTCACATGCAGAAGACCACGAAATCTCCAAGACCTCTGAAAGAGGTCAAGTTCAAAGATTCACCATCTGCAATTCAAATCTCTGAGACACCTAGCACTCCACACGTCTGTAAGAAGAGATCAAAATCTTCAACAAGACGTTCTGCTACGCCCAAGCACAAAGTTCAGGCTAAATCCATATCCTCTATTGACCTTTCATTGAAGGGGAACTCGCAGTCAGACACGTCCAAATCACCCTCAAAAGTATCAAGCTCTCAATGCTTAGCTTCCCAGATGAATCACTCACAGAAGTTCATCCTCCAAGTAACCCCGAGCCCTAAAGACCCTCAtcagaggaaaaagaagaagaaacatgGCCAAAACAAGCCAACTTCAAATACCCCTGCAGAGACAACAGCGAGAATGCAGGCTCATCCACAAGCCCAGTTTAAGACTCCATCACCAAGAACATCAAACATCCAACCAGAGTACCCCCTTCCTTCCAAAGCAGCATCGTCCAGCACTTTCAAACGCCCAATATCTGCAAGACAGGGAAATTTAAAGATTGGGCATAATTGCACCCGCAGTACGCAGACGCCGTTCAGAAGGCCAGACACGCCGAGACCTAAAAGCTGCCCCGAATTTCTGAAATGGAAGAAGGTTCTTGAGCTCAGAGACAAAATGACAAGACCTACTTCCAGGAGCCTGTGCAGCTTCCAAGGACACTCGTCAGAAGAATACGCAGATATTCTTCCCTCACCCAGACAGATGTTCTCAGACAGTTCATCACTGTCCATCCAGTTCACACAGAAGCATGGTCACTCCAGCAGGCCTGCTCTCGACCGTGAGAATTCTTCTCAACGTCTGGAACAAAGTCATCATGCTGCTGTACTGAATAAGAGGATGGAGAGCCAGCATCTCAGCACATCGTCTCCATCCATAACCCTGCAAATCGCCCAAGAGCAGCGTTCCGGTTCCTCCAGCCCAGAGCTCAGCCAGGCCATACTCAGTGCCATGAGACTTTTTTTGAGTAAGCAGCCAGCGGAGGCGGAGTCTACCTCCTTTAACAGCCCGTGCCATCCGAGTCCTAGCCCTGACACTTCAGCCTCTGGCGGGGATGCCAGGCAGCGGCCTGTCAGCCAGAGGACAAGTCTTTCAGGATGCCAGTATTTTGCTGTTTCTATCAAACCTCTGGAGCTTTCTCCTCCTTTACCGTTCCTCAGCCAGGACACGTGCCGTCCTGTTGAGCATAGAGGACCCTTCTGGCTGGTGCAGGAAGGGGGAGATAACCATACCCAGTCATCACCTGAACAAACCCTGACCGAGCGAGAGATCAATGGACAAGCTGCAGAACCAGATGCAAAAAAGGCAGATAAGATTAAATCTGCATCAAAAAGTAAACGCCATACTATATAGTAACAAAATCCAGGGATCTGTGTGTAAATAGTTCATACCTAGGTATTTTGGGAAGCCTCTTTGTTGTATTTACCATAAATGAACATAGGATGGCAGCGTTGTGTAACACTGTTGAGCATCCCTGCTCTGTTCTTTGTCTGGGGATGTGCCAAAAAAAGGAAGATGTTGaagataaaaaatcaaataaatcatatttacaattttttttttctgaaattttaGTGCGATGAACTTTCTGTAGTAGATTAAACCATTTTATTTCACATGCATCatagttttttatttggttttaaagTGTATTATCATAGCATTCACAGCTCTCCTCCTTGCCCTCCTCATGTCACAGGGAGCATTGCAGTGATAAAGGGGAGTCCTATTAAGTGGGTGGTTTAATTTGCTTGGCTAAATTTGAGAA

Function

GO: NA

KEGG:

id description
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680889.1 True 3084 mRNA 0.47 6 3125091 3131636
XM_022680891.1 False 3083 mRNA 0.47 6 3125086 3131636

Neighbor

gene id symbol gene type direction distance location
LOC103031401 LOC108435143,LOC108276558 coding upstream 834 3098197 ~ 3124252 (+)
LOC103030349 LOC108435127 coding upstream 40081 3063895 ~ 3085005 (+)
LOC103031719 NA coding upstream 62714 3052035 ~ 3062372 (+)
LOC111195006 LOC108435149,LOC108277169,LOC107679516,LOC107730971,LOC107672600 coding upstream 118077 3001233 ~ 3007009 (+)
LOC103030660 LOC108435150,LOC108277167 coding upstream 127423 2973757 ~ 2997663 (+)
LOC111195007 LOC108435126 coding downstream 11212 3142848 ~ 3156115 (+)
LOC103031084 NA coding downstream 38560 3170196 ~ 3173556 (+)
LOC103029394 smad4a,LOC108435141,LOC107559658,LOC107668639,LOC107741365,LOC104924734,LOC107373891 coding downstream 46742 3178378 ~ 3189700 (+)
LOC103042678 NA coding downstream 1110532 4242168 ~ 4244029 (+)
LOC111195096 NA coding downstream 1201237 4332873 ~ 4337695 (+)
LOC103032978 LOC103033194 non-coding upstream 195831 2914789 ~ 2929255 (+)
G172914 NA non-coding upstream 349068 2774888 ~ 2776018 (+)
G172913 NA non-coding upstream 350250 2774543 ~ 2774836 (+)
G172906 NA non-coding upstream 431955 2667370 ~ 2693131 (+)
G172903 NA non-coding upstream 511573 2613226 ~ 2613513 (+)
G173045 NA non-coding downstream 31736 3163372 ~ 3163578 (+)
G173048 NA non-coding downstream 67143 3198779 ~ 3199215 (+)
G173049 NA non-coding downstream 68927 3200563 ~ 3200788 (+)
G173050 NA non-coding downstream 69238 3200874 ~ 3201620 (+)
G173079 NA non-coding downstream 247243 3378879 ~ 3379158 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other upstream 399010 2718609 ~ 2726076 (+)
G172770 h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302 other upstream 1127724 1994708 ~ 1997362 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other upstream 1269332 1853282 ~ 1855754 (+)
LOC103041266 NA other upstream 1274870 1839351 ~ 1850216 (+)
G172552 NA other upstream 1496281 1626799 ~ 1628805 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other downstream 333497 3465133 ~ 3739736 (+)
G173094 NA other downstream 608666 3740302 ~ 3743205 (+)
G173111 LOC108435134,LOC108277016 other downstream 777306 3908942 ~ 3931991 (+)
gdnf gdnf,LOC107653769,LOC107752627,LOC107692037,LOC107569368,LOC107727951 other downstream 986398 4118034 ~ 4130482 (+)
G173397 NA other downstream 1611933 4743569 ~ 4744249 (+)

Expression


Co-expression Network