LOC111195007 (LOC108435126)


Basic Information

Item Value
gene id LOC111195007
gene name LOC108435126
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 3142848 ~ 3156115 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680892.1
GTTCATTAGTGCGGCTGAGAGGAGCTGAGCTGCTGTTAGACTCAGACTCTCCTCCAGCAGCGGGGAGGAGACCCAACCAGCAGCTCGCAGGAACCCAGTTACCCACCCAGACTGGACCCGAGTGAGGGACTGGAGCTGGCAGAAGATTAGGACCAGCAGCAGGAGCTCAGACACGCGGCGGCTCGGTCCGCTGAGGATCCACAGCTCTGCTCTGCACTGCTGAGGGTTCaggatttatttaaattgaagAGAAAAAGGTCTGCCACTTCTGCCCATGGAAGGACACTCTAAAGGAGGCGAATCTGGGCCGGATGGAGAATCGTGGGCATTGCCCACAGCGCTCTACATAATCCCAGTGTACACCATCAACGTCACCAACAGCACCAACTCCACTCCGGAGGAGCTGGTCCTGTTCTCGCCGTATTACCAGCACTCGCTGGGCATGGCGGCCGTCTTCATCCTGGCCTACCTGTTCATCTTCCTGCTCTGCATGATCGGGAACGGCGTGGTGTGCCTGATAGTCCTAAGGAATCGACACATGTGGACGGTCACCAATGCCTTCATTCTCAACCTGTCCATCAGCGATCTCCTCGTGGGCATCTTCTGCATTCCCACAACCTTAGTGGACAATCTCATTACAGGTTGGCCCTTCAGTGATGTGATGTGCAAACTGAGTGGCCTGGTGCAGGGGACGTCCGTCTGCGCCTCCGTCTTCACCCTCGTGGCCATCGCCGTGGACAGGTTCCGCTGCATTGTTTACCCATTTAAGCCCAAGCTCACGCTGCTGGTTGCGAAGGCAACCATCGGGCTGATCTGGCTGCTGGCTCTGGTCATCATGTTCCCGTCGGCCCTCATGCTGACGGTGGAGCAGGAGAGGGGCCACTTCACAGTTTATAACGGCGACTACAACCTCAGCTACCCGCTGTACTCCTGCTACGAGACCTGGCCGGACCCGCAGATGAGGAAGGTCTACACCACGGTGCTGTTCGCCCACATTTACCTGGTGCCCCTCGTCCTCATCATCCTCATGTACGGCCGCATTGGCGCTAAGCTCTACACCACCACGGTGCTGGTCAACGTGGAGCAGGCCGATGGCACCCCTCACGGAAAGTGCCCCGTCTCCCAGAGGAAGATTAAAGTCATCAAGATGCTGATCGTGGTGGCGCTGCTCTTCATGCTGTCTTGGCTGCCCCTGTGGACTCTCATGCTGCTGACGGATTACGCTCGACCTGAAGGGGAGCAGCTGGAGCTCCTGACGGGCTACGTTTTCCCCTTCTCGCACTGGCTGGCCTTCGCCAACTCCAGCGTCAATCCCATCATCTACGGCTACTTCAACGAGAACTTCAAGAGGGGCTTCCACGCCGTCTGTCAGCAGACGTCCTGCTGCAGCCGAGGGAGGCATTCCAGGCTGGGTATCAAGAGGCCTGAACGAGGTGCCGAAGTTTCCGCACACCTGGATAAAACCCTCAACTCTAACAACCTCAGCTTGGGGGTGAGGAACAGAGTCTACACAGACAGCGACTTAACGGGCTGCGTTCGTCTTGAGATGGAGCACAGGAGGGCTTCTGCGGAGCTGAGGAGCTCGGGGGCTGAAGGGGGGCTCGGAGGAACGTTGATCAAAAGAGAGCTTCTGGAAAACATGGAGTGGATCAGTCCAGCAGGTGCTACCGTCTACCAGGCCTGGGAACTTTAAATAAGAACCTTTATAGCAAGGCTGTACATAGCTGAAGACCAAGATTACCCTTACACTGGCGTAAGATGGCTTTAGATGGTAAAATGTTCAACACAGCAACATAACTTTCATACTGTTGGAAGCCTAAAAAATGAGCTGTGACTATGTACAACTTGTTTATGTACAGATATGTGTAgcatttctctcatttttgaATGATTTCAAGCTgtcactgactttttttttcttttttatattcatcTACATGCTTATACAGGGacagttggacaatgaaactaaaacacctgtcattttagtgtgggattttaggtttcatggctaaat

Function

NR:

description
PREDICTED: neuropeptide FF receptor 1-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K08375 NPFFR2; neuropeptide FF receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680892.1 True 2017 mRNA 0.54 4 3142848 3156115

Neighbor

gene id symbol gene type direction distance location
LOC103030033 NA coding upstream 11212 3125086 ~ 3131636 (+)
LOC103031401 LOC108435143,LOC108276558 coding upstream 18596 3098197 ~ 3124252 (+)
LOC103030349 LOC108435127 coding upstream 57843 3063895 ~ 3085005 (+)
LOC103031719 NA coding upstream 80476 3052035 ~ 3062372 (+)
LOC111195006 LOC108435149,LOC108277169,LOC107679516,LOC107730971,LOC107672600 coding upstream 135839 3001233 ~ 3007009 (+)
LOC103031084 NA coding downstream 14081 3170196 ~ 3173556 (+)
LOC103029394 smad4a,LOC108435141,LOC107559658,LOC107668639,LOC107741365,LOC104924734,LOC107373891 coding downstream 22263 3178378 ~ 3189700 (+)
LOC103042678 NA coding downstream 1086053 4242168 ~ 4244029 (+)
LOC111195096 NA coding downstream 1176758 4332873 ~ 4337695 (+)
ranbp3l NA coding downstream 1198819 4354934 ~ 4379352 (+)
LOC103032978 LOC103033194 non-coding upstream 213593 2914789 ~ 2929255 (+)
G172914 NA non-coding upstream 366830 2774888 ~ 2776018 (+)
G172913 NA non-coding upstream 368012 2774543 ~ 2774836 (+)
G172906 NA non-coding upstream 449717 2667370 ~ 2693131 (+)
G172903 NA non-coding upstream 529335 2613226 ~ 2613513 (+)
G173045 NA non-coding downstream 7257 3163372 ~ 3163578 (+)
G173048 NA non-coding downstream 42664 3198779 ~ 3199215 (+)
G173049 NA non-coding downstream 44448 3200563 ~ 3200788 (+)
G173050 NA non-coding downstream 44759 3200874 ~ 3201620 (+)
G173079 NA non-coding downstream 222764 3378879 ~ 3379158 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other upstream 416772 2718609 ~ 2726076 (+)
G172770 h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302 other upstream 1145486 1994708 ~ 1997362 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other upstream 1287094 1853282 ~ 1855754 (+)
LOC103041266 NA other upstream 1292632 1839351 ~ 1850216 (+)
G172552 NA other upstream 1514043 1626799 ~ 1628805 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other downstream 309018 3465133 ~ 3739736 (+)
G173094 NA other downstream 584187 3740302 ~ 3743205 (+)
G173111 LOC108435134,LOC108277016 other downstream 752827 3908942 ~ 3931991 (+)
gdnf gdnf,LOC107653769,LOC107752627,LOC107692037,LOC107569368,LOC107727951 other downstream 961919 4118034 ~ 4130482 (+)
G173397 NA other downstream 1587454 4743569 ~ 4744249 (+)

Expression


Co-expression Network