LOC103040857 (LOC108433505)


Basic Information

Item Value
gene id LOC103040857
gene name LOC108433505
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 6594232 ~ 6621157 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680966.1
ATGAGTCCGGGGCGCGCGGGACTGCGGATATCTCCCCCGGGGACCGGCGCGTGCACCCTGAAGAGAGAGGAGCGGCGCGTGAATGGAACCGGCcagctgtgaaacatggtgaagTGTGCTCCAGCGGGGAGCAGCCTGCTGTGGAGCTCGCTCTCTCTGCTGGTTCTGATAGGAGCTCTGGTTCAGGGAGCTTCTTTTTACGGGGATGGTTTTGTCCAGCTGAAAACTGTGGAAACGTCCAGTAAAAACTCCCTACATGTGCGCTTTCGGACGTCCAGCCCTGACGGACTACTGTTCCTGGCTGCAGGGGACAATGACTTCCTCTGGGTGGCGCTACACTCTGGACACATTCAGGTACGGCTTGAACTCGGATCAGGGGAGCACACCCTCCGCTCAGAAAAAGCGACTCCTTTGAACGACCTGCTCTGGCACACTATAGAACTTCAGCACGATGAGCATCACGTCACTCTGGCTGTGGACAAAACCTGCCATGGCACTCTGCAGATTCCTGGACCTGACTTGGAGCTCAGTATCCAGGAAGGTCTCTACGTAGGCGGGCTCGGGAGCTTAGACAAGCTCTACCTCTTTAAAGAAATGTGCCCTGTAGGCTTCCGAGGCTGCATGGATGAGGTTTTCTTTAACGAGCACAACCTTCTCTCATCCCTGAGGCCTTACTCTGGCTATAAAATGGTCCATGAAGTATCGCTGGGCTGCAGCCCACAGTTCTCTGCGACTGTGAACGACTCCATCAGTTTCTTCAGTTCCAAGGCCTACATGTCTCTGCCTGTGTGGGAGGTTCCACAGGAAGGGGTGTTTGATTGCGAGCTTTACACCTCAGCTGAAGAAGGGCTGGTTTTGTACAGCTCTGCTGGGCAAGGGGACTACATAGCCCTTGAGATGCGAGACAGGCACCTTGTCGCTGTTGTCAGGATCGGTGGAAGTAAAACAGCCTTGCGCAGCACAGCTGCAGTGAATGATGGAAACTGGCACTCGGTACGGCTTTATCTAGCACCCAAGGCCCTCCACTTAACTGTAAGGGAGGAGACTCTCAACTCCAGCTTGGGGGCAAAGTCTCGGCCCCTCCAGCTAAGCGGACCCCTCTTCTTGGGAGGAGTGGACGTAAGCACTCGTTCAGAAGTTCGAAGGAATGGCTTGCTTTCTGTTGTAGGGAAGCACATAGGAGGAGGTTCCTTTAAAGGATGTCTAAGGAACATCAAAGTCAATGACCAAAACATGGGTCTGCCCAGTGCTGTGGTCACCAAAGACATATCTGTCGGTTGTGAACCATTAAAGAACATTGAACCATTGACCACTGTAAGTCCGGAAACACTTGCACCAGACACTTCAGCCACAGAACATCAGCCTGAATCTGACAAAAAGAAGTCTCAGACTTTCTTGTTGCTCGAAGACTTGCAGGTCTTGGAAGGTGGACGAGCACCACTCGAGTCAAAGCACATCAAGGTGAACCTAGAGTTCCGCAAGCTTGGAATCCGCCAATCGCAGATCATGTTCCGCATTGAGGAGCAGCCAGTCCATGGACAGTTGAGGCTTGATGTTGACTCTGATCAAGGGGACAATACCTTCAGTATGCTGGACCTTTGGCATGGTAGAGTCATGTATGTCCACGGAGGCTCTGAGGACCCCCTGGACTTCTTCATGTTTTCTGTCTTCACCAGCAGCAAGAAAGAGGTGCCTGGTTTTTTAAAGGGGAATCGATTGCACAGATTCAACATTACGGTCGAGCCAAGCAATGATGCCCCAGAACTGAGCCTCCCTGAAGGCAGCCTCTTTGTTCTTCTGGAGAACTCCAAGCGTCGTCTGACCACAGACTTCCTCAGGGCTACTGATCCTGACAACAACTCCACAGAACTAGTTTTCACTCTTTTAGGCAACCTTACTGCAGATGCTGGCTTTCTGGAGCTTGAGGATAACCCTGGGCAAGCTGTGACCTCTTTTTCCTACGCAGATCTGGAACAGGGAAAGGTCAGTTATGTCCATACAGGCGTCAGCAACTCTAGGATGGCTCTCAGGGCAAGCGATGGGGAAAAAATAAGCAATGCGGTGGTGATAAGGATCATGGCGGTCACCCTGGGGCACAAAATTGTGAACAACACAGGAGGGGAGGTCATCCAAGGTGGAGCTACACACATTGGTAACAAGCATCTAGCTGTCGAAGTCAACGTTGCTACGCAAGCAATGGATATCCGCTATGATGTCGTAGAGCCTCCGATTTATGGTGAGGTGCAACGGCTTCATTCTGGTGGTGAATGGAAGCAGACCAATACCTTCACGCAGAAGCTTCTAGAAAAAGAACGACTCCGCTACCTCAGCACCTATCGTGGAATCCAGTTGAGTAACGTGACCGACAGCTTCAAGTGCAAAGTCACTATTGGCTCTCTGTCGACTGACGAGGTTGTCTTTGTGATTAAGGTACGGTGGATTCATTACAAAGTCACGAGGAGTAAACTGGAGGTGGACAGCGATCATGAAGTCCTACTGACTCCTCAGGAATTCCGAATCGTCTCCAAAGGAGTGAAGTTGCCTGAGGAAGACATTCAAGTCCGCTTACTAACCTTACCAAAAAAAGGCAATTTGCTGTTCGACGGCGACGAGATCCTACAAGTCAATTCCAGTTTTAGCCAGAGGAACATCACCGATCACAAAGTACGATATAAGCTTTTTGAGAGAGCACATGAAGACATGAGGGACATGTTCAGCTTTGTGGTGTTCTCGGAATACTCCCACTCTGGAAAGCATGACTTCAGGATAAGTATTAAAGCGGATGTTAACAGCATAATCTTAAGGAATCTTGGACTTTCAGTCGTGGAAGGGCAAAGTAAGGTCATAACCAAGGATGTCCTTTTTTCTGAGACTCTCAGTTCTAGAGAGGTGTACTATACAATCACAAGTAGTCCTAAAAATGGGAAACTAATGAGAATAAACCATTGCAATTCCACGACCAATGGAGATAACGTAGTGGCGTTCACCAATAGGGACATCCTGGAGGACTGTATCTCGTACGTTCACGACGATAGTGAATCTACTCACGATGCCTTCACGTTCCGTGCTTCCATGTCCCCTGTTAAAGACAAAGCTCCAGCGACAGAGGACACTTTCAACATCTCCATTCAGATGATCAATGATGAGAAACCTGTCAGAGTTGTGGATAAAGTCTTTCATGTTGCCAGAGACAGCCAGAAGTTGCTAACCTTGGAGGACCTCTGTTACCACGACCCTGACGTAGACTTCGATGATGGGCAACTGCTTTACACCAGGCGAGGAATCCCGATGGGTGAGCTAGTCCTGGTCAACGACACTTCCCACAAGCTTTACCAGTTTCGTCAGAGGGATCTTGCAGAAAAACGAGTGCTCTTTGTCCACAGAGGCGTCAGCTTCGGTCGCTTCGTCCTCTTCATATCAGACGGAAAGCACTATACCTCAACACTGCTGGAGGTCAGTGCCCAGGACCCTTATTTGAGGGTAGTCAACAACACTGGCCTACTGGTCCAGAAAGGTAAGGAGGTTATTTTAAGGCCTGCCAACTTCAGCGTCACCACCAACACGGACATCAGAAGCGACGAAGATGTTCTTTTTGAGATATTTCACCCCCCAAGTTACGGCACTCTGCTTTGCGTTGGCATGGAGGGCGATGCGTTTACCCTGTACGATGTGAAGACTGGCTGTGTGGCGTATCATCACGACAACAGCGTGAACATGATGGACTCCTTTAGCTTCACCGCTACAGCGAATGGGCTGCGACTGGACGTGACGGTTGAAGTGAAGGTGTACCTCGAGAGTCACCAGCGAGCTCCTCAAGTGGCTCACAACAACTCTGTACTGGTGGAGGAAGGAAAACCAGtgaaaattcataaaaaagaaCTTGAGGTGGTTCACGAGGACAGCTCACCAGCTGAAATTTACTTTTCTGTGAAAACGTCTCCGTCGCACGGCTTCTTACGACGCTACGCAGAAGGAGAACCTCACTACCAAGGAACCCTGGAGAACCCCATTGTATCCTTCTCACAGGACGACATCAATACAGGACACATCCAGTACGTGCAGGTCAAACCAGGACACTCCAACGACTCGTTCTCATTGGACGTCACCAACGGGATTCTGACCGTCAGTGACCTTATTGTCTCCGTGGAGATCATACCTTCACATATACCATTAGAAGTATCAAATCTGACCTTGAAAGAGGGATCATCAAAGGCTTTAACTCAGGACGTCATCAGGGTCACCAGCAGACACTTCAAAGGACTTCATTTCCAGTATCATGTGATAGAAGGTCCTCATCACGGCCATATAGAGCATTCCAGAATCCCAGGAGTCCCGATCCCGTCTTTCACCAGGATGCAGGTGGAGCATGAGTTTATATACTACGTTCATGACGGCAGCGAGACCACAGCGGATAATTTCACACTGGTGGCGAATGATACGGATCTCCGTAAGCAGAGTCTTCCTCATATCATCCACGTGACGGTGATGCCCGTTAACGACGAGCCTCCGGTTATAACGGCCAACAGGATCCTGAGGGTGTGGGTGGACTCCATCACTGAAATCTCTACAGATGATCTGAGCGCTGAGGACCTGGACTCCTCCCCGGAGAGCCTGGAGTTCATCATCACCCCCCCAACCAACGGCCACCTGGCCCTGAAGAGCGCCCCCTCCAGGCCTGTCCTCAACTTCACCCAGGCTCACATCCTAAACAGCCGGCTGGTGTTCGTACACAGCGGTGCGCTGTCTGGAGGATTCCACTTTCAGGTGAATGATGGAGTAAACTTTGCCCCAAGGCAGATCTTCAGCATCACCGCCCGGGCTCTGGTCCTCACCCTGGAGAGGAACCGCGAGCTCAGAGTATTTCCAGGTTCCTCCAACTTGATTTCTGTAGAAGACCTTCTGATCGTCACCAACGACTACGATGATATTCACGGGAATCGCACCATCGTCTTCTCCGTCACCACACCACCCAAACTGGGCAGACTGGTCCGGATCCAGGAGGACAATTCCACTGAGACGAAGCAAATTTCCACATTCACCCAGAGCATGATCAAGGCGAACGTGGTTCTGTATGAACACACTGAACCGGTGGGATGGGCGGCGACAGATTCCTTTATCTTCACtgcattttctcctccagctTCTCTCAAACCACAGACCTTCAAAATCCACATTTCCTACGACAACACCAGCCCAGAGCACAGAACCGTCCTTCTGGCTAACAGCGgTGCTGTTGTGGCTGAAGGCAGTCGAGTTACGATAGATAAGTCAAGACTGGATGCCTCGAACCTTTTGGGAAAGCTTCCCGAAGAAGAACGCCACTCGTACGAGATCTGGTACGGTGTCACCACGCCACCGCGCTACGGCACAATCGTCGTAGGAGAGAGGAACCTAACTCGTGAGAAACCCAACTTCTCCCAGTTCATCCTCAACAAATTTGGCATCACATACGTCCACGATGACTCTGAGACAACCTGGGACAACTTCGGATTTGATGTGTGGTTGAATCCCAAAGGGAAACCTACTCAAAGACCAAAAGACGCAGATCTTTTGGTCTCTGAGACGTTCCACATCTCGGTGACTCCTGTAAACGACCAGCCTCCCTTTTTCAAGACCCAAGCTCCTGGTCTGAGGGTCATCAAAGGAGACACGGTAGCTTTGAGACCTGAGAACCTTCTAGTGGAGGACCTGGACACTCCACCCGAGGACATTCACTATACTGTAATCAACAAACCCAACAATGGCTTCTTGGCCTTGAAAGGAAGGCTAAACGAGTCTACGGTCACTTTTACCCAAGCGGATGTGAACGAAAGAAGAGTTTACTTTGTTCAAGATGGGCATCCAACCTCAGGAATATTCTACCTAAGTGTAACCGATGGTTTCCACCATCCACTCTACAAACTCTTCAACCTCGAAGTCGACAATGTCACCATCACTGTGGTGAACAACACTGGGCTATCTCTTCTGCAAGGGCAGACTACGACAACCCTGGCCCTTCAACACTTGGCGGCAGTAACCAACAAGAAAAACATCACCATAAAGTATCACCTTACTTCGCCACCGAGTCACGGTAGGCTCATGATCATGGAAGAGGCAGCTATATGCTTTGATCATGAAGACCTTCGGTTGGGAAGGGTGTCTTATCACATGACTGATTTGTCCTCATCTCAGGATAGCTTTGAGTTGGCTCTTCTTACCTCTGAAAGCAACCTGACCAACCAGGTAGTCAACATCACGGTCAGGCCGTTGATCCACCTCGGCGAACATGTCTGGATTGCAGAAGGTGTCCCTGTGAAGCTAAGGAAGGATGTTCTGGATGCCACAGAGCTTGCTTCCATCAGCGCCAGCGATCCAGTCTTCGAAATTCTCATCCCTCCAAAATATGGAAAGCTAGTCAAAGCAACCTATGGCTTGGGTGGTTCCTCAAAATCTGTGGAATCGTTCTCCTTTACGGACATCGAACAAGGCAGGGTTGCCATTGAGGAACACATCAACTTGACCGTATCTAGACATGACAATGCAACAGCAGTCAGAAGAAACATAACCGCTAGTGTACTTCATGACTCGTTTGTGTTCCTCTTAAAGGCAACGAATGTCCAACCTGCCAGAGGAGAGTTCTCTTTCCTCGTCTTACCGTACGATCCGAAGACAGGAAAACATGTCATCGTAGAACCTCCGATGCAACCGACCAGACATCCTTCAATCAACAGAACCACCAATCCAGTGTCCCCAATGAACCATCCATCGCACACACATCCAACCACACGACCACATCGAATCCCCGCAAAGACGAGGTCGAGACATCATCGCTTTGGGAATCACACTCGAGTACGGTCCCCGGTATCTACCGCACCCAAATCCTCTTTGGGAAAGCAAGACGAGTCCCTGAAGAACACTCCAGTCTGGGTGGAGTCCCTGCCAAGACCTGCCTCCGACCCCCTGCTCATCATCCTGCCCTTCCTGGCCTGCTTGCTTCTCATCGTCATCCTGGTTGTTCTTATTCTGGTCTTCAGGCACAGAAGAGAGAAGCGAGCCCAGCCTGCGATGATCCCAGATCTACCGGAAAGCTCTGGAGAGGACATTCTGCCACACAGCCCTTATATGGGTCCATCTGAAAGAAGCCTAACCGTCCCCTCAGTCGTGGTGACGCCACTAACTCCGAGATGCCCCATAAACCCAGTTCTAGAGGCAGTGCACAATGCTGCATTAGTGCCAGCTATTGCACCTACGGACTCTCCACTGCTTCTCTGCACCTGGACTCCCATGATGGGTCATGATGGGATTCACCGGGTCCCACCTGGCACGCCAACGCTCAGACACAATCAGTACTGGGTTTGACACAAGTATTCTGAGTGAGGGATGAACCTCCAATGATCTCAGATCTACCGGAAGACTCTGGAGAGCGTCCAACAgaagcttaaaggagaactccagtgtaaaatgaacttttgttgtagtgaaacatgataaaaagttct

Function

NR:

description
PREDICTED: chondroitin sulfate proteoglycan 4-like

GO: NA

KEGG:

id description
K08115 CSPG4; chondroitin sulfate proteoglycan 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680966.1 True 7478 mRNA 0.50 10 6594232 6621157

Neighbor

gene id symbol gene type direction distance location
LOC103038257 anxa3 coding upstream 103561 6478050 ~ 6490671 (+)
mrrf mrrf coding upstream 134921 6427802 ~ 6459311 (+)
morn5 NA coding upstream 255086 6319616 ~ 6339146 (+)
LOC111195010 LOC107702182 coding upstream 375514 6212016 ~ 6218718 (+)
LOC103039720 strbp,LOC107686417 coding upstream 654548 5775221 ~ 5939684 (+)
LOC103040555 arl15b,LOC108433533,LOC107713334,LOC107595536,LOC107744085,LOC107686429,LOC108276853 coding downstream 40355 6661512 ~ 6758449 (+)
LOC103021605 vezf1a,LOC108435808,LOC107741171,LOC107653704,LOC107578318,LOC107697453 coding downstream 447703 7068860 ~ 7094059 (+)
LOC103041127 LOC108435809,LOC108277236 coding downstream 480349 7101506 ~ 7140740 (+)
ksr1 LOC107741140,LOC107583358,LOC107653729 coding downstream 525239 7146396 ~ 7201824 (+)
LOC103047365 NA coding downstream 585924 7207081 ~ 7217675 (+)
G173890 rasgef1bb,LOC108433534,LOC108276874,LOC107713332,LOC107595538,LOC107685137 non-coding upstream 45455 6546275 ~ 6548777 (+)
G173875 NA non-coding upstream 82873 6510072 ~ 6511359 (+)
G173874 NA non-coding upstream 85511 6506747 ~ 6508721 (+)
G173868 NA non-coding upstream 102394 6491393 ~ 6491838 (+)
G173858 NA non-coding upstream 192888 6383174 ~ 6401344 (+)
G173953 LOC108433532 non-coding downstream 21260 6642417 ~ 6642936 (+)
G174000 NA non-coding downstream 299739 6920896 ~ 6965637 (+)
G174016 LOC108411648,LOC108276885 non-coding downstream 367567 6988724 ~ 6990776 (+)
G174031 NA non-coding downstream 456614 7077771 ~ 7078247 (+)
G174140 NA non-coding downstream 671725 7292882 ~ 7296362 (+)
LOC103041160 NA other upstream 52853 6536327 ~ 6541379 (+)
G173501 NA other upstream 1410455 5183491 ~ 5183777 (+)
nrarp nrarp,nrarpa other upstream 1441396 5103727 ~ 5152836 (+)
ptbp3 ptbp3,LOC106592370 other upstream 1690030 4800629 ~ 4904202 (+)
G173397 NA other upstream 1849983 4743569 ~ 4744249 (+)
G174259 usp25 other downstream 1283438 7904595 ~ 7925440 (+)
acer3 acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427 other downstream 1527962 8149119 ~ 8166662 (+)
LOC103038455 NA other downstream 1927727 8548884 ~ 8552610 (+)
rexo2 NA other downstream 2505551 9126708 ~ 9153133 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other downstream 3999871 10621028 ~ 10631765 (+)

Expression


Co-expression Network