LOC111195015 (LOC108433251)


Basic Information

Item Value
gene id LOC111195015
gene name LOC108433251
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 8233811 ~ 8241060 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681004.1
CCGTCTGGAGTTCAGCACCATCAGCAGcatcaccagcagcagcagcagtaccaGGCAACATGAAGCCCTACTACCGGCTCTGCATTCTCCTCGGCTTGTTTGTGGTGGCCGTCCACTCAGGTCCGATTTCACGCCAGGCTGATAACGATGATGCTCTCATCCAGagttACCTGAAGAAGTTCTACAACTTGACAGAGCAGACAGGACCTCACTCCAAAGGCAGGACCAATCATATGAGTGAGAAAATCGCTGAGatgcagaagtttttcggactcACAGTGACAGGAACCGTGGACCAGGAGACCCTGCAGGTGATGAAGAAGCCCCGATGTGGAGTTCCAGAAGTTGCTCAGTACACCACCTTCGGAGCAGGTCTCAAATggcagaagaaccagctgacaTACAGGATTGTGAACTACACTCCAGACCTGTCTCAGGCTGAGGTGGACAGTGTTTTAGAGAAAGCTCTGCAGGTCTGGGCTCGTGTCACTCCTCTCAAATTCACCCGCATCTCCAGCGGTGACGCCGACATCATGATCTCCTTTGGAGCAGGATCTCATGGTGATTACTACCCATTCGATGGACCAGGTGGAACTCTGGCTCATGCTTTCGCTCCCTCTGCTGGTATTGGTGGAGACGCACATTTTGATGAGGATGAACTTTTCACCTCCAGCTCCACTAAAGgGTATCTTCTGTTCCTGGTTGCTGCTCATGAATTCGGACACTCGCTGGGTCTCTCTCACTCCAGCGACCCCGGAGCTCTGATGTACCCAACATACAGCTACAGAGACCCAAACACGTTCGTCCTGCCCAGAGACGACGTCAACGGAATCCAGTCTCTCTATGGCCCAAACACTGACGTGAACCCCGACAAACCCGCCCCACCTCCTCCAGTCACCCCTGACGCCTGTGACCCCAGCCTGGTTCTGGACGCCGTCTCAACACTGAGAGGAGAGAAGATCTTCTTCAAGAACAGCTTCTTCTGGCGAGTTTCAGGGAGCGGCCAGGCCGAGCAACACCTGATCAAGAGCTTCTGGACTGATGCTCCAGACAACATCGACGCTGCTTATGAGAACACAGCACAGGACAAACTCTACCTCATCAAGGATCAGAAGGTCTGGGCTCTCTTCGGATATGACCTTGTGCAGGGTTATCCCAAGAGCCTCAGCAGCCTGGGTCTGCCCACGAAGGTGAAGAAGATCAGTGCTGCTCTTTATGATAAGAACACTCGCAAGACCCTGTTCTTCACTGACAACTATTATTACAGTTATGATGCAAGCAGGAAGGTGATGGACAAGGGATACCCCAAACTGGTGGAGCAGGGATTCCCAAGGGTCACTGGAAAAATTACTGCAGCATTCCAGTACAACGGTTTGACCTACCTCTACAGTGGAAATCGTGTGTTCGAGTACAGCCCAACCAGCAAGAAAGTCACACGTGTGCTCAGTAACAGCTACCTCCTGCCCTGCTAGTAGTTTATATCTGTGGGGCACACTGAGTGCATCAatctttttgcaaaaaaaaaggctaatttatgtttttagaatagattaaaatattacagaGCTTTTTACTGCCAacattctttaattttttatttaatttatttataatcttaTTCATATCTGCATACCTGTATTTCTACTGATTTCAATGCAATATCTTTTGTGTAAAATTTGATTATGTTCAACAGACTTGTTTACAaagtaaatcaataaaaatatatcattttaaa

Function

NR:

description
PREDICTED: collagenase 3-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005581 collagen trimer cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681004.1 True 1735 mRNA 0.48 10 8233811 8241060

Neighbor

gene id symbol gene type direction distance location
LOC103038343 NA coding upstream 10478 8216792 ~ 8223333 (+)
LOC103041846 LOC108433277 coding upstream 24526 8188729 ~ 8209285 (+)
LOC103041345 LOC108433277 coding upstream 35650 8195096 ~ 8198161 (+)
LOC103038651 NA coding upstream 42072 8189220 ~ 8191739 (+)
LOC103038957 NA coding upstream 47315 8173875 ~ 8186496 (+)
LOC107197515 NA coding downstream 4826 8245886 ~ 8249321 (+)
LOC103038016 NA coding downstream 11842 8252902 ~ 8260391 (+)
acat1 acat1,LOC107653722,LOC107583377,LOC107758700,LOC107565255,LOC107679529 coding downstream 19886 8260946 ~ 8269363 (+)
tmprss2 NA coding downstream 33142 8274202 ~ 8287408 (+)
dscam dscama,LOC108433273,LOC108277288,LOC107653721,LOC107758699,LOC107679528 coding downstream 76172 8317232 ~ 8449156 (+)
G174366 NA non-coding upstream 3194 8230308 ~ 8230617 (+)
G174263 NA non-coding upstream 169010 8006273 ~ 8064801 (+)
G174255 usp25 non-coding upstream 329969 7902800 ~ 7903842 (+)
G174256 usp25,LOC107680319 non-coding upstream 341248 7883716 ~ 7892563 (+)
G174176 LOC108435816 non-coding upstream 561951 7667401 ~ 7671860 (+)
G174408 NA non-coding downstream 257395 8498455 ~ 8498951 (+)
G174424 NA non-coding downstream 321450 8562510 ~ 8562865 (+)
G174438 NA non-coding downstream 414464 8655524 ~ 8658542 (+)
G174559 NA non-coding downstream 851381 9092441 ~ 9094096 (+)
LOC111195017 NA non-coding downstream 899089 9140149 ~ 9141298 (+)
acer3 acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427 other upstream 67149 8149119 ~ 8166662 (+)
G174259 usp25 other upstream 308371 7904595 ~ 7925440 (+)
LOC103041160 NA other upstream 1692432 6536327 ~ 6541379 (+)
G173501 NA other upstream 3050034 5183491 ~ 5183777 (+)
nrarp nrarp,nrarpa other upstream 3080975 5103727 ~ 5152836 (+)
LOC103038455 NA other downstream 307824 8548884 ~ 8552610 (+)
rexo2 NA other downstream 885648 9126708 ~ 9153133 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other downstream 2379968 10621028 ~ 10631765 (+)
G174874 LOC108437803 other downstream 2591108 10832168 ~ 11019418 (+)
G174994 NA other downstream 3188811 11429871 ~ 11436530 (+)

Expression


Co-expression Network