LOC103033609


Basic Information

Item Value
gene id LOC103033609
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 9752333 ~ 9758484 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681036.1
tactgAGCTCTGACTCGTCCGTAGACACCAGGGTGGAAAGGCGTcaccaaaaatatgttttatgcaactaaaaCATAAAGTAATTTCCGAAGGTTGAATGCAATTTGGATGCTGATTTAGGGACTACCTTACCAACTGGAGGAAAATACACTGCTGCACATATTTTGTTGACTATGGAAGACACAAAGGTTCAAGCCTCTACAAGCATCAATATGGTCACTGCTATCCTGCTGGGCAAGAGAGGCTATGAGAAGGCACTGGTTGGGAATACCATGCTTGGCCACGTATGTTTTAAACCACAAATATCCAAATGTCATCGGGTAGTGTATCAAGAGGAAGGTCAGATATGTGATGTCATAAACACTCCAGATCTCTACCATGGACCAAATCCTGACTCTAAAGAAGAAAATCTACCACAGATGAAGTTGTCTTACTCGGGGGTACGAGTTTTCCTCCTGATCGTGCAACATGATGACATCTCTTCAGAAGAAATGACCATGTTTAGAAAGCTGAAAGAAACCTACGGAAGAACAATAGTGGACAATGTGATTGTAGTTCTGGACATCAGCAAAAGCCAAACATCACAACTGGAGATAGACAAGAACATCCAAAAGATTATTGGCAAATGTGGTGGgagattttgttattttagacagGGAATGACGAAGGACAAACTGAACGAACAGCTGCTGTCAACGTTAAAAAGAATGTTGCTGAAGAATGCAAATGACAGGGTGGGCACTACCTCTGTTGTACCTTGTGACAAAACCTCACAACATGAATCAGCTGGTGGAGAAGCAGGTGTGGCTGTTCCTGAAGCGAAAATGAAAATGCTAGATGACAGGATAAATAAGATCACTGGTGACTCAAAAGTGAACCCAGATGCAGCTGTGGCAGCTGGAGGAAAACAGGTAGAAGACATGAATTACAAGGACTCCAGCAGATTTAATCCCAATATTTTGACAAAAAAGCCTGAAGATGAGAAGTTCCAGCCTAAACCAACCGGAGAAAATCATGCTGCTGTTCTGCCTGAAGAGCAAAAGACGCCACCTGTaactaaagagagaaagatacatcCTAGTGTCCAGGAGAGACTTGAAAGGTCTAACAAACTTTCTGAAAAAAGGATTCAAGACAAAAAGGCACAACCTAACCTACCTGGTGAAGAAGCAGGTGTGGCTGTGCCTGAAGTAAAACTACAGGAAAACAAGATTAGCAAGACCAGCAATGAATCTAAAGTAAAACCAAATGAAGCTGTGCATGGAGGAAAACAGGAAGCATACATGGAAAACAAGCACATGAGCAGATATAAGGGTAATACTTCGGCAAAAGTGGTCCAGTGTAAACCAACAGatgaaATTGCAGGTGCAGCTGCGCCTGACGTGGAGATGACAAGCAACAGTTTATATGAGAGCATAGATAATCCTAaaaacAGCAGTCAAGAGACCACGGGCGTTAGTCATTACACTGCGAAGACACCCCCGGCTGTACCAATTGccaACCCACCAACAATCAAAGTCCAGCCTCAATTTATGACAAACGTTCTGACCATTGTGCTGTTGGGACAGACAGGTAGTGGGAAAAGTGCAACTGGGAACACCATCCTAGCCAGGAGCCACTTTGAATCGCGTGCCAGTTCCGCACCCGTAACCCAGCGGTGTGAGGTAGGGGAGGGAGTAGTGTGCGGGATAAAGGTCAGGGTCATCGACACCCCAGATTTCTTTGACGAGGAGCTGAAGGATCCAGAGATTCATTTGCAGAAATGCAAAGATCTCTCTCAGGTTCAGCCTGTTGTGTATCTGCTGGTTATGCACATGGGTCGTTTCACAGAGGGCGAGAGGGAGGCCGTATCCAACATGCAGAAAACATTCGGCGAGAGAGTGGTCGCACAGACGGTCGTTCTGTTTACAGGCAAGGAGAAGCTGAGGGAGATGGATTTATACGATTACATCAAAAATGCCGACCCTCAGCTTCTTCAGATGGTTCAAACATTCGGCTTAAGGATTCACGCCTTTAACAACAacgaaaaaaaacatcaacaagTAAAAGAGCTGGTGAAGATTTGGATGAAAATGCCAATCGGAGACAGAGTCAAAGAGCAATACAACAGACACAAGGCTGAACCTAAAGAGTGCAGAGTTCTGTAAACTAATGGAGGatgtatgtattgtgtattgttaaTGGCATTGTTGTAATAGTACTTTTGTATTAATATACTTcctaaatgagtttttaaataatacttggAGAGTTATTTAAATGTCA
>XM_022681037.1
tactgAGCTCTGACTCGTCCGTAGACACCAGGGTGGAAAGGCGTcaccaaaaatatgttttatgcaactaaaaCATAAAGTAATTTCCGAAGGTTGAATGCAATTTGGATGCTGATTTAGGGACTACCTTACCAACTGGAGGAAAATACACTGCTGCACATATTTTGTTGACTATGGAAGACACAAAGGTTCAAGCCTCTACAAGCATCAATATGGTCACTGCTATCCTGCTGGGCAAGAGAGGCTATGAGAAGGCACTGGTTGGGAATACCATGCTTGGCCACGTATGTTTTAAACCACAAATATCCAAATGTCATCGGGTAGTGTATCAAGAGGAAGGTCAGATATGTGATGTCATAAACACTCCAGATCTCTACCATGGACCAAATCCTGACTCTAAAGAAGAAAATCTACCACAGATGAAGTTGTCTTACTCGGGGGTACGAGTTTTCCTCCTGATCGTGCAACATGATGACATCTCTTCAGAAGAAATGACCATGTTTAGAAAGCTGAAAGAAACCTACGGAAGAACAATAGTGGACAATGTGATTGTAGTTCTGGACATCAGCAAAAGCCAAACATCACAACTGGAGATAGACAAGAACATCCAAAAGATTATTGGCAAATGTGGTGGgagattttgttattttagacagGGAATGACGAAGGACAAACTGAACGAACAGCTGCTGTCAACGTTAAAAAGAATGTTGCTGAAGAATGCAAATGACAGGGTGGGCACTACCTCTGTTGTACCTTGTGACAAAACCTCACAACATGAATCAGCTGGTGGAGAAGCAGGTGTGGCTGTTCCTGAAGCGAAAATGAAAATGCTAGATGACAGGATAAATAAGATCACTGGTGACTCAAAAGTGAACCCAGATGCAGCTGTGGCAGCTGGAGGAAAACAGGTAGAAGACATGAATTACAAGGACTCCAGCAGATTTAATCCCAATATTTTGACAAAAAAGCCTGAAGATGAGAAGTTCCAGCCTAAACCAACCGGAGAAAATCATGCTGCTGTTCTGCCTGAAGAGCAAAAGACGCCACCTGTaactaaagagagaaagatacatcCTAGTGTCCAGGAGAGACTTGAAAGGTCTAACAAACTTTCTGAAAAAAGGATTCAAGACAAAAAGGCACAACCTAACCTACCTGGTGAAGAAGCAGGTGTGGCTGTGCCTGAAGTAAAACTACAGGAAAACAAGATTAGCAAGACCAGCAATGAATCTATAAAACCAAATGAAGCTGTGCATGGAGGAAAACAGGAAGCATACATGGAAAACAAGCACATGAGCAGATATAAGGGTAATACTTCGGCAAAAGTGGTCCAGTGTAAACCAACAGatgaaATTGCAGGTGCAGCTGCGCCTGACGTGGAGATGACAAGCAACAGTTTATATGAGAGCATAGATAATCCTAaaaacAGCAGTCAAGAGACCACGGGCGTTAGTCATTACACTGCGAAGACACCCCCGGCTGTACCAATTGccaACCCACCAACAATCAAAGTCCAGCCTCAATTTATGACAAACGTTCTGACCATTGTGCTGTTGGGACAGACAGGTAGTGGGAAAAGTGCAACTGGGAACACCATCCTAGCCAGGAGCCACTTTGAATCGCGTGCCAGTTCCGCACCCGTAACCCAGCGGTGTGAGGTAGGGGAGGGAGTAGTGTGCGGGATAAAGGTCAGGGTCATCGACACCCCAGATTTCTTTGACGAGGAGCTGAAGGATCCAGAGATTCATTTGCAGAAATGCAAAGATCTCTCTCAGGTTCAGCCTGTTGTGTATCTGCTGGTTATGCACATGGGTCGTTTCACAGAGGGCGAGAGGGAGGCCGTATCCAACATGCAGAAAACATTCGGCGAGAGAGTGGTCGCACAGACGGTCGTTCTGTTTACAGGCAAGGAGAAGCTGAGGGAGATGGATTTATACGATTACATCAAAAATGCCGACCCTCAGCTTCTTCAGATGGTTCAAACATTCGGCTTAAGGATTCACGCCTTTAACAACAacgaaaaaaaacatcaacaagTAAAAGAGCTGGTGAAGATTTGGATGAAAATGCCAATCGGAGACAGAGTCAAAGAGCAATACAACAGACACAAGGCTGAACCTAAAGAGTGCAGAGTTCTGTAAACTAATGGAGGatgtatgtattgtgtattgttaaTGGCATTGTTGTAATAGTACTTTTGTATTAATATACTTcctaaatgagtttttaaataatacttggAGAGTTATTTAAATGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681036.1 True 2265 mRNA 0.43 11 9752333 9758484
XM_022681037.1 False 2262 mRNA 0.43 11 9752333 9758484

Neighbor

gene id symbol gene type direction distance location
LOC103030527 NA coding upstream 21342 9723554 ~ 9730991 (+)
LOC103034239 NA coding upstream 52507 9698383 ~ 9699826 (+)
LOC111194977 NA coding upstream 59574 9691302 ~ 9692759 (+)
LOC111195100 NA coding upstream 67198 9683904 ~ 9685135 (+)
LOC107197516 NA coding upstream 70878 9680385 ~ 9681455 (+)
LOC111194980 NA coding downstream 547432 10305916 ~ 10308693 (+)
LOC103035292 trpc7a,LOC108437819,LOC107552051,LOC107677994,LOC108277129,LOC107720592,LOC105905985,LOC106603261 coding downstream 829547 10588031 ~ 10614469 (+)
LOC103029337 fbxw11,LOC108277126,LOC105905987,LOC106603254,LOC107687420,LOC106568099,LOC107678030 coding downstream 875350 10633834 ~ 10654803 (+)
LOC103034638 LOC108437817 coding downstream 932358 10690842 ~ 10695462 (+)
LOC107197089 LOC107197089,LOC108437815 coding downstream 938075 10696559 ~ 10704898 (+)
G174609 NA non-coding upstream 378385 9371441 ~ 9373948 (+)
G174582 NA non-coding upstream 430990 9319390 ~ 9321343 (+)
G174583 NA non-coding upstream 438195 9313904 ~ 9314138 (+)
LOC111195017 NA non-coding upstream 611035 9140149 ~ 9141298 (+)
G174559 NA non-coding upstream 658237 9092441 ~ 9094096 (+)
LOC111195021 NA non-coding downstream 2068 9760552 ~ 9762446 (+)
G174719 NA non-coding downstream 61627 9820111 ~ 9820433 (+)
G174738 NA non-coding downstream 464226 10222710 ~ 10223083 (+)
G174783 NA non-coding downstream 552709 10311193 ~ 10311590 (+)
G174788 NA non-coding downstream 577422 10335906 ~ 10336194 (+)
rexo2 NA other upstream 599200 9126708 ~ 9153133 (+)
LOC103038455 NA other upstream 1199723 8548884 ~ 8552610 (+)
acer3 acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427 other upstream 1585671 8149119 ~ 8166662 (+)
G174259 usp25 other upstream 1826893 7904595 ~ 7925440 (+)
LOC103041160 NA other upstream 3210954 6536327 ~ 6541379 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other downstream 862544 10621028 ~ 10631765 (+)
G174874 LOC108437803 other downstream 1073684 10832168 ~ 11019418 (+)
G174994 NA other downstream 1671387 11429871 ~ 11436530 (+)
G175108 NA other downstream 2150388 11908872 ~ 11913456 (+)
LOC103027177 tmem261,LOC103027177 other downstream 2432872 12191356 ~ 12209449 (+)

Expression


Co-expression Network