LOC103035292 (trpc7a,LOC108437819,LOC107552051,LOC107677994,LOC108277129,LOC107720592,LOC105905985,LOC106603261)


Basic Information

Item Value
gene id LOC103035292
gene name trpc7a,LOC108437819,LOC107552051,LOC107677994,LOC108277129,LOC107720592,LOC105905985,LOC106603261
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 10588031 ~ 10614469 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681040.1
AGCTCGTGAGGAGGACATTGGGGAAGGTAGGAGTCTATGGTCAGCGTGGCTCGTGCTTCGTGTGCAGGAGAGCGCGAGATGCTGGCGGCGAACGAGCGCTTCGTGGTGTCTCACGCGGCGCTGTGCGGGATCCCCCTCAGCGGGACGGAGCTGATGGCGCTGCACGCGCAGACAGAGGAGGATGGCGAGAGCGCGCACGATCACGCGCACCGGCACGCGCAGCACACGTTTGAAGCCATGCAGCGGAGACACACCACCCTGAGAGAGAAGGGCCGCAGAGGCCCAGCCTACATGTTCAGTGAGCGAGGGACCAGCCTCACCGCAGAGGAGGAGCGCTTCCTGGACGCTGCAGAATACGGCAACATCCCTGTGGTGCGCAAGATGCTGGAGGAGTCCAAGACCCTCAACGTGAACTGCATGGACTACATGGGCCAGAACGCCCTGCAGCTCGCAGTGGGCAACGAGCACCTGGAGGTGACGGAGCTGCTGCTGAAGACGGAGGGGCTGGCGCGGATAGGGGACGCCCTGCTCCTGGCCATCAGCAAGGGGTACGTCCGCATTGTGGAGGCCATCCTGGCGCATCCGGCCTTCGAAGGTGGTCTACGCTTTGCCCACAGCCCGCTGGAGCAGGAGCCACGGGAAGATGACTTCTATGCATACGATGAGGACGGAACTCGCTTCTCTCAGGATGTTACACCTGTCATTCTTGCTGCACACTGCCAGGAGTACGAGATTGTGCACATACTGCTGCTAAAGGGAGCCCGCATCGAGAAGCCACACGACCACTTCTGTAAGTGCAGTGAGTGTATGGAGAGTCAGAAGCAGGACTCCTTCAGCCACTCGCGCTCCAGGATGAACGCCTACAAAGGACTAGCCAGTGCTGCCTACCTCTCACTGTCCAGCGAAGACCCGGTGCTTACGGCCTTGGAGCTCAGCAACGAGCTCTCCCAGCTGGCCAACATCGAAACTGAGTTTAAGAATGACTACAGGAAGCTCTCTATGCAGTGTAAAGACTTTGTGGTTGGGGTGCTGGACCTGTGCCGGAACACAGAGGAGGTTGAGGCTATTCTGAATGGTGATGTGGACCATAACACGCCGAGGGAGCACAACAGGCCCTGCCTTAGCCGTGTAAAACTGGCTATCAAATACGAGGTGAAAAAGTTTGTGGCTCATCCGAACTGTCAGCAGCAGCTCCTGACCCTGTGGTATGAGAACTTGTCTGGCTTGAGGCAACAGCCTATTGGAGTGAAATGTTTAACGGTGCTGGGTGTGATGGTGGGCCTACCTTTCCTGGCAATTGCATACTGGATCATGCCCTACAGCAAAGTGGGTCAGGTTCTTCGCAGTCCATTCATGAAGTTTGTAGCCCACGCTGTCTCCTTCACTACTTTCCTGGGACTGCTAGTGCTCAATGCCTCCGATCGCTTTTTAGGAGTAAAAAATCTACCCAATGAGACCATCACCGACCACCCGCGCCAAGTGTTCCGCGTCAAGACCACACAGTTCTCCTGGACGGAGATGCTTATTATGAAATGGGTGCTTGGAATGATCTGGTCAGAATGTAAGGAGATCTGGGAGGATGGACCTCGGGAGTACATAATGCACCTGTGGAACATCCTGGACTTTGGCATGCTGTCCATCTTCATAGCATCGTACACGGCAAGACTTATGGCATTTCTGCGGGCTTCTAACGCACAGCTGTATGTCGACCTGTATGTGACGACCTCTGACCTGAGCAATGCCACTCTTCCTGAAGAGGTGGCCTACTTCACTTATGCAAGGAACCGATGGCTGCCCTCGGACCCCCAGCTCATCTCTGAGGGTCTGTACTCCATCGCTGTGGTCCTGAGCTTCTCTCGCATTGCCTACATCCTGCCTGCCAACGAAAGTTTCGGACCCTTGCAGATCTCCCTGGGCCGAACCGTGAAGGACATTTTCAAGTTCATGGTCATCTTCATCATGGTCTTTCTTGCTTTCATGATTGGCATGTTTAACCTCTACTCGTACTACCTGGGAGCGAAGTACAACCCTGCTTTTACCACGGTCGAGGAAAGCTTCAAGACGTTGTTCTGGTCCATCTTTGGTCTGAGTGAGGTtatctctgtggtgctgaaGTACGATCATAAGTTCATTGAGAACATCGGTTATGTTCTGTATGGAGTCTACAACGTCACCATGGTCATTGTTCTGCTCAACATGCTGATTGCAATGATAAACCACTCTTACCAGGAGATTGAGGAGGATGCCGATGTTGAGTGGAAGTTTGCCCGTGCCAAGCTGTGGCTGTCTTACTTCGATGAGGGCAGGACCCTCCCTCCTCCGTTCAATCTGGTGCCCAGCCCCAAGTCCTTCTATTACATGGCCTTAAGGACCAGAGCCTGTCTCGTCAGACAATGCAAGGCCAGGGGCCGTCGTCATGGCAGCCAGCGAGACATGGACATCCCCGGTTCCCGGACTAAGCTCCACAGGTTCCGTTCTTACCACGCTCAAGAGGAATACACAGTGAAAAATCCCATCAAACATCCGACGAGATACcagAAGCTTATGAAGCGCCTCATCAAGCGGTATGTCCTGAAGGCTCAAACTGACAGTGAAAATGATGAAATCAATGAAGGTGAGCTGAAGGAGATAAAGCAGGACATCTCCAGCCTCCGCTATGAGCTCCTAGAAGAGAAATCTCAGGCCACGGAGGAACTTGCTGACCTTATCCAGCAGTTGGGTGACAGACTCAGTAAATCCACCAAGAAGCCCTGAAGAACTCTCTGTTCTCTGCATCGCTGATACCAACCTTTCAGCCCAGATGCTGCAGGCTATGTTCTAGCTAGTGCCTCTAAAATTCTGAGACTGTCTTCGTCTCAAACTACAGCTGACCTTCGTCCATATGCCTGTTTCCTGCAACTCTCCTATGCAGCGTAGCCTTTTTAAACACTTGGGACCAGTTCCCCAGAACAGTTTAGGATTAACCCATGGTCAGAATACATGGTTAGAATTCGTAAAGACTATATTTCGGCATTGACTTGAGAAATAAGTTATTGGCTTAGTACACTGTATTTAGATTAACAATATACATTTGCAAAGAGTTTTTTGACACTAGTCAaacttacatatatatttattgcattgtagtttgtgtttaattttttgaaGCAGGAAAACAAGtcttag

Function

symbol description
trpc7a Predicted to enable inositol 1,4,5 trisphosphate binding activity and store-operated calcium channel activity. Predicted to be involved in metal ion transport; regulation of cytosolic calcium ion concentration; and single fertilization. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of cation channel complex. Predicted to be integral component of plasma membrane. Is expressed in midbrain and olfactory receptor cell. Orthologous to human TRPC7 (transient receptor potential cation channel subfamily C member 7).

NR:

description
PREDICTED: short transient receptor potential channel 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681040.1 True 3165 mRNA 0.52 13 10588031 10614469

Neighbor

gene id symbol gene type direction distance location
LOC111194980 NA coding upstream 279338 10305916 ~ 10308693 (+)
LOC103033609 NA coding upstream 829547 9752333 ~ 9758484 (+)
LOC103030527 NA coding upstream 857040 9723554 ~ 9730991 (+)
LOC103034239 NA coding upstream 888205 9698383 ~ 9699826 (+)
LOC111194977 NA coding upstream 895272 9691302 ~ 9692759 (+)
LOC103029337 fbxw11,LOC108277126,LOC105905987,LOC106603254,LOC107687420,LOC106568099,LOC107678030 coding downstream 19365 10633834 ~ 10654803 (+)
LOC103034638 LOC108437817 coding downstream 76373 10690842 ~ 10695462 (+)
LOC107197089 LOC107197089,LOC108437815 coding downstream 82090 10696559 ~ 10704898 (+)
LOC111195028 LOC108437795 coding downstream 92855 10707324 ~ 10709830 (+)
LOC111195025 NA coding downstream 96038 10710507 ~ 10713283 (+)
G174801 LOC103045071 non-coding upstream 15132 10572480 ~ 10572899 (+)
G174798 NA non-coding upstream 17869 10537086 ~ 10570162 (+)
G174792 NA non-coding upstream 103901 10483584 ~ 10484130 (+)
G174790 NA non-coding upstream 108460 10478291 ~ 10479571 (+)
G174788 NA non-coding upstream 251837 10335906 ~ 10336194 (+)
G174807 NA non-coding downstream 40574 10655043 ~ 10655689 (+)
G174809 LOC103034963,LOC108437818,LOC108276546 non-coding downstream 46821 10661290 ~ 10663494 (+)
G174810 NA non-coding downstream 50608 10665077 ~ 10665428 (+)
G174811 NA non-coding downstream 52481 10666950 ~ 10667180 (+)
G174812 NA non-coding downstream 56429 10670898 ~ 10671171 (+)
rexo2 NA other upstream 1434898 9126708 ~ 9153133 (+)
LOC103038455 NA other upstream 2035421 8548884 ~ 8552610 (+)
acer3 acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427 other upstream 2421369 8149119 ~ 8166662 (+)
G174259 usp25 other upstream 2662591 7904595 ~ 7925440 (+)
LOC103041160 NA other upstream 4046652 6536327 ~ 6541379 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other downstream 6559 10621028 ~ 10631765 (+)
G174874 LOC108437803 other downstream 217699 10832168 ~ 11019418 (+)
G174994 NA other downstream 815402 11429871 ~ 11436530 (+)
G175108 NA other downstream 1294403 11908872 ~ 11913456 (+)
LOC103027177 tmem261,LOC103027177 other downstream 1576887 12191356 ~ 12209449 (+)

Expression


Co-expression Network